TCONS_00037362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037362
Unique NameTCONS_00037362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037362 ID=TCONS_00037362|Name=TCONS_00037362|organism=Clytia hemisphaerica|type=transcript|length=830bp
TTGTAGATTTGGACCAATATGTTTGTGAGCTAAATCAACAAGTTAATAAT
TATCAAGATGAGGCAAATCACAAACAAAAGGATTTGTCATTATTGCCAAA
CAATTCTATTTTTTTACCCTTTTGAGCAACTCAAAGACTCAGAATTTTTT
TACTGTCCACATTGCAAAGAAGATACTGGGAAAAATGTACCATTAGACCC
ATCACTAGGAACAGAATGGGAATATGCTGAATCATCAGGCAAAGAACCTA
GATTGATTTGGGACATATTTTGGTATTGTGCTCTAGTTGGTAAGATAACC
AAGTGTTGTAATGGGCATTCAATTACATCGTATCACCCTGGAATTTTGCA
ACAAATTTCAAACTACCTATTCTTACTTTCTCACAAGCGTGGAATGACTA
AGTCAACATATGACCTGATAATCCGTTTAGTTGAACAAGTCAACAATTTT
AGTAGCATTGAAAGTATATTTCTTAGCAGTTTCGTCGATATCGTCCATCG
AAAACTAGCTCTAATCAACAACACCAACATGCAGACATCTATTGAATTCA
TTGAACAACTGAAGCTGTTTACTCCATCACATGATTTTATCActtcttgt
tttgttttcaattttgataactACAAAGATGTTTATCTTTCTGAAATGGA
TAAACTCACCTTCATTTGGCTTTCAGGAGACCACACGTTTCGTGTGGCTG
CGAATATAGGCATGTACAAAGACAGAAGGTGGATCAAACTGTTTGACTCT
TTATTTTGTGTTCTCAATGAAAAAGGTCAGGGTGAACCAAGAACGTTGCC
GGGAAGTGCATCCACGTTGGTCATCAATAA
Run BLAST on NCBI

protein sequence of TCONS_00037362-protein

>TCONS_00037362-protein ID=TCONS_00037362-protein|Name=TCONS_00037362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MRQITNKRICHYCQTILFFYPFEQLKDSEFFYCPHCKEDTGKNVPLDPSL
GTEWEYAESSGKEPRLIWDIFWYCALVGKITKCCNGHSITSYHPGILQQI
SNYLFLLSHKRGMTKSTYDLIIRLVEQVNNFSSIESIFLSSFVDIVHRKL
ALINNTNMQTSIEFIEQLKLFTPSHDFITSCFVFNFDNYKDVYLSEMDKL
TFIWLSGDHTFRVAANIGMYKDRRWIKLFDSLFCVLNEKGQGEPRTLPGS
ASTLVIN
Run BLAST on NCBI

transcript from alignment at sc0001617:51666..55479-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037362 ID=TCONS_00037362|Name=TCONS_00037362|organism=Clytia hemisphaerica|type=transcript|length=3814bp|location=Sequence derived from alignment at sc0001617:51666..55479- (Clytia hemisphaerica)
TTGTAGATTTGGACCAATATGTTTGTGAGCTAAATCAACAAGTTAATAAT
TATCAAGATGAGGCAAATCACAAACAAAAGGATTTGTCATTATTGCCAAA
CAATTCTATTTTTTTACCCTTTTGAGCAACTCAAAGACTCAGAATTTTTT
TACTGTCCACATTGCAAAGAAGATACTGGGAAAAATGTACCATTAGACCC
ATCACTAGGAACAGAATGGGAATATGCTGAATCATCAGGCAAAGAACCTA
GATTGATTTGGGACATATTTTGGTATTGTGCTCTAGTTGGTAAGATAACC
AAGTGTTGTAATGGGCATTCAATTACATCGTATCACCCTGGAATTTTGCA
ACAAATTTCAAACTACCTATTCTTACTTTCTCACAAGCGTGGAATGACTA
AGTCAACATATGACCTGATAATCCGTTTAGTTGAACAAGTCAACAATTTT
AGTAGCATTGAAAGTATATTTCTTAGCAGTTTCGTCGATATCGTCCATCG
AAAACTAGCTCTAATCAACAACACCAACATGCAGACATCTATTGAATTCA
TTGAACAACTGAAGCTGTTTACTCCATCACATGATTTTATCACTTCTTGT
TTTGTTTTCAATTTTGATAACTACAAAGATGTTTATCTTTCTGAAATGGA
TAAACTCACCTTCATTTGGCTTTCAGGAGACCACACGTTTCGTGTGGCTG
CGAATATAGGTAAGTAGCAAAAGTTACAAAGAAAGGGGTAGCATTTTCAC
ATTGGGGGATGCCAAGAAGGGGGGGGTACGGAAAAGTGGTTTGTCGGTTT
CAGCCTTATTTTTGTCGGTTATCGGTGAACGGAAAACATTACGGTGTCGA
TGATTGAGCTTTTTTGTTCGGTTAATCGGTGAGTGGATCGATATTCAAGC
GGTTTTCGGTGACAAGTTAAGTATAATGGTTTTGGAGAAATAAATTATCC
CAAGAATCAAAAAGTAAATTAACTACTACATGTAATTTTTCTTTGCTCGC
TTCGCTTGCATAAAATACTGTATCAGTGACCAATTGAGTCTTTCAGATTT
CAAGAGTGCATAAATGACCTTTGTTACAGGAAAACTTGGAATAATTCTGC
TAGATTTAGTAGCAGTATTGGGGAACTGCCAGCGGCGGCCGATTTTTCTA
TGGAGGGGGACAAGGGGCACCAAAAGGCGCCTCTGACATAGGGTCCACCC
CCCCAGAGATTTGGGGGTACCTAAAAAGAAAATTCTAAACTTTAAGGGGT
ACCTTGAAGTATTCCCAAATTTAGAAGGTATCTGATATATTTGGGGGTAT
CTGTAATCTCGTAAGTGGGGGCGGGGGCTGTTCTTTCTGTACGAAGTATT
TTCCTTGGCTCAACCAATTTTCCAATTTTCAATCAAACCTTTTCATTGAG
AAGACTTTATAACTTATGTCTTTCCCTTTTCATCCAGTTTTCTTCTCTTA
CATTGACGAATGAGCATAAAATCCTTTATATTGCATTTAACAATAAAAAA
GGGGGTAACTCAAAGTTGGGGGGCTAAGTTTAGAATTCTAAAAATTTTGG
GGGTACCAAAATGATTGGAGGTACCTGAACCCTGGAGGACCCTATGTCTG
ATTGCTAATTTTGGCGCCTCTTTGCTGTTATAAACCCTAAAATTAGCAGT
TTTCAGCCAAAAAGAGGAAAAATATCCAAAGATTTCGCTGATTTTCGCTG
ATTTCGCTTGCGTAAGCTTTCCAAATATCTTTTTCTTAATAAGGGGGCGC
CAAAATACTAACTCTTGAAAATTACTTCCTTACTTTGCCCAAATATTGGT
TGATCAACCACGCTACTGTTTAGCAGCCCCAAAAAGATGCTCTTTCTAGG
CACCAAATCTTAGAGATCTCAATCAATCAATATTAGGCTATGCTCATCCT
CTAAGGAAAAGGTTTCTTATATGATCCCTATATGATGCAGAATAGACGTC
TGCGAAAAAGAATAATACAATCAAAATAAGTCTGTTAATGTTTTTTCAAC
ATTCTCGACTGGACCCAACTTTTCTTTACCTTTGAATTGTAGAGTCAATT
TAGTGAATGCTTTGGGCAGAAAACCGTTGACTCGTTAATTGTTAATCAGG
GACTGCGCCTTGCGAAGAAAACAGGAATTTTTTAAATTAAAGACCAAGGG
CATCATTTTGGGGCAAATTGAGTCTGAAACAGGGCTATTTTGAGCACATT
AGGGAGTCAAAATCCAAAATTTCCTCCTCCTTAGTTTGGCCACTTTACTA
TCAAAATCAAGGGAAGGGCCCTGTTGATCTGATTCATTAGATGATAGATC
TTTTTAAGCCACGGTCTTAAGGAATTTTTAAAACTGAAAAGTTTCATGTC
AGCGCAAACTCTGTTTGCGCCTTTCCTTACCAATACTAGATATTTGACAA
CTATTTGCCATCATACGCATCATATATCATAACTTAATTATTAGCNCTTT
GGTCTTAAGGAATTTTTGAAACTGAAAAGTTTCATGTCAGCGCAAACTCT
GTTTGCGCCTTTCCTTACCAATACTAGATATTTGACAACTATTTGCCATC
ATACGCATCATATATCATAACTTAATTATTAGCAGCTCAAGACTTCATAG
CCATGTATACAATGATGCTAGTATTTGAAGGGAAGCTGAACGGCTGAACG
GCCCGCTGAAAACCACGGATGCCAAACTTATGGTTTTCAACTCAAAAAAT
TATTTTAGGCAAAGTGGCTTTGGATGGGGTCCATATCATCTACAATATCA
ATGATTAAAAAAGGCTTCTGGAGCAAGAAGGAAAAATCGGTGTCGGTGAA
AAGGATAAATTCTGTCGGTTTATCGGTGAGAGTAGAGCAATTTTTGAGCG
GTTTATCGGTTTTCGAAAGTCCTGTACGCCCCCCTCACAAGAAGAGGGTC
CTGAGGGGGGGGGGTTTCCGGACCCCCAGGAAACTATGTTTTCCTAAGAA
ATCTCACCACAGCAAATGTGCTGCCAAAATTTTGTATATAATCCAAGATG
GCGGACAAAAAGCGAAAAGGTCCATGTAATATGATATTTTTATATATCTT
TTTCTAAATTCCCTTTACAGGCATGTACAAAGACAGAAGGTGGATCAAAC
TGTTTGACTCTTTATTTTGTGTTCTCAATGAAAAAGGTCAGGTAATGGGT
TTCAGACTGGTTAAAGGAACTAAATTTGACCTTGTTTATGACATTTTCAA
AAAACTGGCTGAGAACGAACCACGCCACACTTTATTATCATTGACAACTG
TTGTTTATGGGTAAACAAATTAAATGAATTATTCCCTGGTGTTGCTGTTA
AACTAGATCTGTTTCATGCCATAGCGAGATTAACCGGACAGGTTTAAAAA
AAACACCCATTGTTTTTTGACTTTGTAAAAGAACTGGGACTAATATTCCG
AGAAATTTCAGATTTTGGAGAGGTAAGGAAATTGCCTACTCCAAAGCCAA
ATGTGATTTTAGAAAATCTTGAAAGGTTCATCTTGAAATGGTCAGATGTC
AGTTTCAAAGGTTGGTTTATTCTGACTCCATCCTTTAGTATGGAAATTGA
AAAGCTTAAGAAACATATTAACTTAGGGTGTTGCTCTGATATTCCACCTG
GTGGTGGCACAAACAAAAATGAAAATCTACATAAACAGCTGAAAAGCTTA
GTTTGTAGAGGAAAAATGAAAACTGAGACGGCAACTGCAATTTTCTCTCA
TTTGTTTTACATCCACAATTCTAAGAAGAATGGGGAAAAGTATGTACACC
CTATATTCTCTAAGGGTGAACCAAGAACGTTGCCGGGAAGTGCATCCACG
TTGGTCATCAATAA

Coding sequence (CDS) from alignment at sc0001617:51666..55479-

>TCONS_00037362 ID=TCONS_00037362|Name=TCONS_00037362|organism=Clytia hemisphaerica|type=CDS|length=2313bp|location=Sequence derived from alignment at sc0001617:51666..55479- (Clytia hemisphaerica)
GGTGAACCAAGAACGTTGCCGGGAAGTGCATCCACGTTGGTCATCAATGC
ATGTACAAAGACAGAAGGTGGATCAAACTGTTTGACTCTTTATTTTGTGT
TCTCAATGAAAAAGGTCAGATGAGGCAAATCACAAACAAAAGGATTTGTC
ATTATTGCCAAACAATTCTATTTTTTTACCCTTTTGAGCAACTCAAAGAC
TCAGAATTTTTTTACTGTCCACATTGCAAAGAAGATACTGGGAAAAATGT
ACCATTAGACCCATCACTAGGAACAGAATGGGAATATGCTGAATCATCAG
GCAAAGAACCTAGATTGATTTGGGACATATTTTGGTATTGTGCTCTAGTT
GGTAAGATAACCAAGTGTTGTAATGGGCATTCAATTACATCGTATCACCC
TGGAATTTTGCAACAAATTTCAAACTACCTATTCTTACTTTCTCACAAGC
GTGGAATGACTAAGTCAACATATGACCTGATAATCCGTTTAGTTGAACAA
GTCAACAATTTTAGTAGCATTGAAAGTATATTTCTTAGCAGTTTCGTCGA
TATCGTCCATCGAAAACTAGCTCTAATCAACAACACCAACATGCAGACAT
CTATTGAATTCATTGAACAACTGAAGCTGTTTACTCCATCACATGATTTT
ATCACTTCTTGTTTTGTTTTCAATTTTGATAACTACAAAGATGTTTATCT
TTCTGAAATGGATAAACTCACCTTCATTTGGCTTTCAGGAGACCACACGT
TTCGTGTGGCTGCGAATATAGGGTGAACCAAGAACGTTGCCGGGAAGTGC
ATCCACGTTGGTCATCAATGCATGTACAAAGACAGAAGGTGGATCAAACT
GTTTGACTCTTTATTTTGTGTTCTCAATGAAAAAGGTCAGATGAGGCAAA
TCACAAACAAAAGGATTTGTCATTATTGCCAAACAATTCTATTTTTTTAC
CCTTTTGAGCAACTCAAAGACTCAGAATTTTTTTACTGTCCACATTGCAA
AGAAGATACTGGGAAAAATGTACCATTAGACCCATCACTAGGAACAGAAT
GGGAATATGCTGAATCATCAGGCAAAGAACCTAGATTGATTTGGGACATA
TTTTGGTATTGTGCTCTAGTTGGTAAGATAACCAAGTGTTGTAATGGGCA
TTCAATTACATCGTATCACCCTGGAATTTTGCAACAAATTTCAAACTACC
TATTCTTACTTTCTCACAAGCGTGGAATGACTAAGTCAACATATGACCTG
ATAATCCGTTTAGTTGAACAAGTCAACAATTTTAGTAGCATTGAAAGTAT
ATTTCTTAGCAGTTTCGTCGATATCGTCCATCGAAAACTAGCTCTAATCA
ACAACACCAACATGCAGACATCTATTGAATTCATTGAACAACTGAAGCTG
TTTACTCCATCACATGATTTTATCACTTCTTGTTTTGTTTTCAATTTTGA
TAACTACAAAGATGTTTATCTTTCTGAAATGGATAAACTCACCTTCATTT
GGCTTTCAGGAGACCACACGTTTCGTGTGGCTGCGAATATAGGGTGAACC
AAGAACGTTGCCGGGAAGTGCATCCACGTTGGTCATCAATGCATGTACAA
AGACAGAAGGTGGATCAAACTGTTTGACTCTTTATTTTGTGTTCTCAATG
AAAAAGGTCAGATGAGGCAAATCACAAACAAAAGGATTTGTCATTATTGC
CAAACAATTCTATTTTTTTACCCTTTTGAGCAACTCAAAGACTCAGAATT
TTTTTACTGTCCACATTGCAAAGAAGATACTGGGAAAAATGTACCATTAG
ACCCATCACTAGGAACAGAATGGGAATATGCTGAATCATCAGGCAAAGAA
CCTAGATTGATTTGGGACATATTTTGGTATTGTGCTCTAGTTGGTAAGAT
AACCAAGTGTTGTAATGGGCATTCAATTACATCGTATCACCCTGGAATTT
TGCAACAAATTTCAAACTACCTATTCTTACTTTCTCACAAGCGTGGAATG
ACTAAGTCAACATATGACCTGATAATCCGTTTAGTTGAACAAGTCAACAA
TTTTAGTAGCATTGAAAGTATATTTCTTAGCAGTTTCGTCGATATCGTCC
ATCGAAAACTAGCTCTAATCAACAACACCAACATGCAGACATCTATTGAA
TTCATTGAACAACTGAAGCTGTTTACTCCATCACATGATTTTATCACTTC
TTGTTTTGTTTTCAATTTTGATAACTACAAAGATGTTTATCTTTCTGAAA
TGGATAAACTCACCTTCATTTGGCTTTCAGGAGACCACACGTTTCGTGTG
GCTGCGAATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022140XLOC_022140Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037362-proteinTCONS_00037362-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037362-exon-sc0001617-1575043694:54771..55479TCONS_00037362-exon-sc0001617-1575043694:54771..55479Clytia hemisphaericaexon
TCONS_00037362-exon-sc0001617-1575043694:52339..52409TCONS_00037362-exon-sc0001617-1575043694:52339..52409Clytia hemisphaericaexon
TCONS_00037362-exon-sc0001617-1575043694:51666..51715TCONS_00037362-exon-sc0001617-1575043694:51666..51715Clytia hemisphaericaexon
TCONS_00037362-exon-sc0001617-1510915933:54771..55479TCONS_00037362-exon-sc0001617-1510915933:54771..55479Clytia hemisphaericaexon
TCONS_00037362-exon-sc0001617-1510915933:52339..52409TCONS_00037362-exon-sc0001617-1510915933:52339..52409Clytia hemisphaericaexon
TCONS_00037362-exon-sc0001617-1510915933:51666..51715TCONS_00037362-exon-sc0001617-1510915933:51666..51715Clytia hemisphaericaexon
TCONS_00037362-exon-sc0001617-1491911889:54771..55479TCONS_00037362-exon-sc0001617-1491911889:54771..55479Clytia hemisphaericaexon
TCONS_00037362-exon-sc0001617-1491911889:52339..52409TCONS_00037362-exon-sc0001617-1491911889:52339..52409Clytia hemisphaericaexon
TCONS_00037362-exon-sc0001617-1491911889:51666..51715TCONS_00037362-exon-sc0001617-1491911889:51666..51715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001617supercontigsc0001617:51666..55479 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.168946	0.0984217	0	0	0	0.217901	0	0	0	0	0	0	0	0	0	0	0	0	0	0.276524	0	0	0	0.0865249	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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