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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037347 ID=TCONS_00037347|Name=TCONS_00037347|organism=Clytia hemisphaerica|type=transcript|length=503bp
gagaaaatggcggaaaatggagctgatttttttaaatcaactaAAGTTCT
TCATCCACCATAATCAAGTGAATATTTGATGGATTTAGTGGAAGTCTCCA
ATCACTGTTACGATGGAGATGTTTTGCAACTACTGGAAGTTTTATTTTGG
TGAATAATTGTTTCAAAGACATTCATTTCCTGTCTTCTGTGGAGATGTCA
GTTCCATTCTTGCCAAAGGAGTAATTGGTGTTGTTGCTGAAGTAACTGGA
ATTCATGTGacTTGGGAGTTGAAGTTGTGCAGTCTGTTGTTAATCTAGCT
ACATCCTGATCTTGTTCACCGCATGCTGTCTCTTGTTCGACCATCACTGC
TTGGTCTAAATATAATAAATTCAAATCAATTCGTTGTAAGCAAAAGGTTA
GTATTTCTAGCAGCTGTCTACTTGGTTGAAACTGCTTTTAAAATAAATCT
AGCATTACCTTCGTCTCCCAGACTAAGGTTCTCTTCATCTCCAAATACCT
GAA Run BLAST on NCBI transcript from alignment at sc0001616:15927..21274+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037347 ID=TCONS_00037347|Name=TCONS_00037347|organism=Clytia hemisphaerica|type=transcript|length=5348bp|location=Sequence derived from alignment at sc0001616:15927..21274+ (Clytia hemisphaerica)
gagaaaatggcggaaaatggagctgatttttttaaatcaactaAAGTTCT
TCATCCACCATAATCAAGTGAATATTTGATGGATTTAGTGGAAGTCTCCA
ATCACTGTTACGATGGAGATGTTTTGCAACTACTGGAAGTTTTATTTTGG
TGAATAATTGTTTCAAAGACATTCATTTCCTGTCTTCTGTGGAGGTATGT
TTTTCTTTCAGAGTGTTACCGATAATCACAttacattttgtttttaattg
atACTAGGAAAGAAATGTAACTAAAGCTTTGAAGATAGTTTAAAAGTAGT
GCCTAGGAATGATAAACTTTATTTACAAAGCTCATTTGTAACTTGAGTAC
TTGTATTGAACCAACTGTAAACTTAAAGTCTCCCATCTGATGGAGCCATA
TCCAAACTCAAAATTGCCAGGGAAAATGCCAATTGGATATTATTGGGGGA
TGGTAGGTGTAGCTTGTGGACATTACTTTTgacaaagaaattttcacaag
aAATATCAGTTTTAAAGTTAAGTTATTTTGTTTGGGTTCTCTTTGTTTGA
CGGCCTGCACGCTCACAAATATTtgacgaccctggacaccgcctTACATT
TTGCTGTGTTGTCCGGTGGGCGTTTTTAAATGTATGGTGGGATTTTAGGT
TAGAATTCCAAAACACCGTACATTTTCCCACCGGAAGATGCATACGTACA
GTTGCTTTTTTTCTATTAGATCGCTCGTAAAAACGGTCAAGGGCGGCTAT
ATTGGACAAGTACTCCCATCGTTCATTGTACAGTGTAGCCGCCGTACCTT
GCACAGTGGTCAAAATAGGTTGACTTGTTCCCAGCGTACGCCCATCGGAC
AACACTGTacaatgtacggcagtgtcCAGGGTCATAATCTTTGCAGGTAG
TTACCGGTTGCCGGTTTTGTTCTGTTGCTTTATACCAGACAGTCTTCATC
GTTAAAATTGATCATGGATTTAAATCGATACAATAGATTTAAATCGATAc
aatcgatattaatcgataGCTAACTGAGgttaaaaaatggaatatcAATT
AGCCAGCATTTGATACAAATATCGATGAGCAATCAATTAAAATTTAAATG
AGATATCAATTAATATTGATTACCTCAAAGTAGTGTCTATAATCAATCTT
TCATCGATTATCTATCAATAAGCTACCTATTGTTATCGACAAACGATCAA
TATCGATTACCTTATAGTATCGATGGTGTCGATTACTAATTGATACAAAA
CATCTATCAATTAATGAATGTTATTGCTGACCcaaaaaatataagcactt
TGATTGGTTTAGAACACAaaatatttgcgatatttcatatttctccaCAT
TAAAAAACATCTCTGGAAACAATTGCAAGAACTTCTCATcttgttttgat
aatttctcCCCTCTGAGAgttagttttttcaaaactcattttgaatattt
tttttctcgaaaagttcATTTGAATGTTCAACAttcgaaaaaacaaaaaa
atgcagaACACAATAATAGacagaatcaaaacaaacaaaaaattgacata
aaagatttttttgggtgacaataaattagttatcgcaTAACTTCTTGTGC
AATACTCAATGTTTTACTTGTTCTGATATTTTACCGATATTATGGAAAAA
TCTcagaactttcaaaatatttcttgtattgcACTCAAAGTCATGTGATA
AGGCTGGGCtttaaaaattgttggtttgccgtcacccaaccctagatttt
ggaggtgggtccatcggaattattttttttttggcgatttatgaactttt
tgtccatggaagggttaacagtctgtttacatttaggtaattttgaataa
aaaacagaagtacTAGCAGGGAATtcacgattcttatgcttgagacaaac
aagatacgagttttgattttttattgttcgaagtttttgaaggaaaaaaa
atcttcttttaaaTGGCAATAAAATCCAGCCTAACCAGTACATcaattta
tcattgattgttttttaaaacttaaaaatgataatcaaaCGACTGATTTA
ATCAATCAAAAACAATAATGGATAAATAATCGACGTccaaaaaattgtga
gtattccaATAATATTGATTTTATTATCCGACGTGCGTAAATAGCGNTAA
ATTGTGAGTAttccaataaaattgattttattatcCGACGTGCGTAAATA
GCGatatttgattggcttcttggctatccaatatttttgaatatatagct
tccatggaggctacattttcaaaaattgacgtcacacaacaAGTTCAATG
ACAATTGTGCATCTTTGTGATAAAgataagacttttgaataaaaaactgc
caagaaaccagatttacAAGCTTACAGTATTATGAATTAtatttgaaaac
gagaaattctcatacaatatgaaaaatattggattcgactttgtccaata
actgcttaatatTGTTTGATATTATTGATTAGAAATTGATAGGGCCAAAG
GGATAGAAAATTAAAAGGCAAAGTTTTTGTGTACTAGAAAGAGATAAGAC
TTctaaataaatatatttatGTACAAAATTGCTAGGAACTGCCTATAAAA
AAGTCAATTGTCACTACTTCACAAAATCATGTATAAAAATCTCAGGAACT
ATTTATATAGAAAGATAAATACTAATATTTATGTACAAAATTGCTAGGAA
CTGCCTATAAAAAAGTCAATTGTCACTACTTCACAAAATCATGTATAAAA
ATCTCAGGAACTATTTATAAAGAAAGATAAATACTAATATTTATGTACAA
AATTGCTAGGAACTGCCTATAAAAAAAGTCAATTGTCACTACTTCACAAA
ATCATTTATAACAATCTCAGGAACTATTTATATAGAAAGATAAATACTAG
AAAAAATGATATTACATATGTACCTATTTTCTACGGTAAATTTATATTTA
AACTTTAGGACAAGATGATAGTGGATGATACAAACTTGTCGTTATAGTCA
AAATACTGTAATCACAAAAATGGattaagtaaataaataaaaaatacata
aataaatataaaaaaacaggaACATTCCATGGacaaatagaaaaaacaag
GAGACCCCAATTTTACAATGACACATTTCTCTTACATCGGGATTGAACTT
TGGGCTTCCCTAAAATTATAAACAACTTACTTGGatctgaaatttttgaa
aaatatgttttgttttataatgatagaaagaaaaagaattcaCTAAAATT
ATCTAAATAATTGTCACTTTAAttatagaaattttagcgagactaatttt
agcgttttagcgagttttccctattttcgctaaaataaatctcgctaaaa
cacaccgaatcgacagatcgctaaaaNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGCgctaaatttctggttatattgccttgatac
atttttatcaataggaagggtttcagtgcatagaaatgctagaaaacgaa
ctcagtcaataatgtaagtTCGCGAGTgttcgctaaaatttatacacgcg
aaattttttgaaatcatgactcgctaaaataaatccaaaaaagacCAAGA
TTTTCCTGCTGCTTCGCtgtacgctaaaattagtctcactaagatttcta
cgattaaagtatttaaAGACATCTTTTAAGTGATTTGATCACTTTTAGTT
TATTCATTAGGCTATTGTATTTCAGTTTTTGTTCTTCATCTTTTGGCACA
GTTGAAATACCAGTGTTTTTCTTAAATGAGCAAATTTCCAAACTCTGAAG
CTGAGATGCCAACTCTTCTTCCCTCTTCTTTAACAAAACCTCAAGTTGGG
CACAAACGTCTTTAAAATTGTTTTGCATCTCTTCTGAAAACTTTGCCTTC
AGGATACTCTTGAACTTGGCATACTGAGTGATCAAATCATTTTTTCCAAG
AATATCCTGGAAATGCTTTGCTGTTTTTGAATTTGCAATGGGGTCTGTGA
TTTCTAAAACAATACCTGTGGACAAGGgaaaaaattacaataatttaaat
ttgTTGGGAATTcaataatttgtaaaatttagtTTAATGGAAACTTAATT
TGGTGGTTGATTCAAATTTACCCTTTAAAttacttactttttttctttcc
ttttgattggtttgatcTAGATGTGCGAGGGCATTGTTTTGCTTCAGCTA
TAATATAAAAATGTTAGGattagaaaataaatgaaaCTTTGTACATGCTT
TCAAACAGTTTTCCTTGAAAGAAAAGCTATATTCACCTTCTTGTTCATTT
GTTGGTGCTTTTATTGTTGATTGTTGATCTGTCTGGGGATCAGCTTCATC
TATACAAAGAAttttatgttaaagttgtttcTGATCCTTTTGAGATATAG
AAAGGAAAATTTAATCTCAGctattaaataaaaaatgtgAAATAGTTGTG
TACATTAATTTAAGTTGTTTTGGGAAGGTAAAGATAGAAAGAGGCAAGTG
AAGTGCTCCTAGACAGTGGAGGGGAAAATTAACCAAGTTAATGTATAATC
AAGTGATTCCCTACCTTCGCTCGAGTCTTCATTGGCATTGACAGGGAGTG
ATTTCGAACAACATGGCATATCTTGATTTTCTAGGGAGTTTAAAATATTT
AGCTTTTAGATATGATTCTTTGAACTTTCTAACTAGCATTGCCACTGTTA
CACTTTTAAACAAttataaattgtttttgaaaaaaaaagattagcaATAA
ACTCACCTGTATCATATTCATTATATTTAGATGTCAGTTCCATTCTTGCC
AAAGGAGTAATTGGTGTTGTTGCTGAAGTAACTGGAATTCATGTGGTAAG
AAATTAATTTCTAAATTACTTTTCTTTTCATATTACTATTTTTATACATG
ACTATGGAAAGAGATTAAATGGGTTTGGGCAAAATCCTCAAAAAGCTTTG
GAACTCTTCTTCCTCGTTATTTATATAGTTATTATCGTCAATCTGTAAGT
TAGCTATTTCAGTTTGAAGCTGTGATCACTTACCttccaattttttgttt
atagacTTGGGAGTTGAAGTTGTGCAGTCTGTTGTTAATCTAGCTACATC
CTGATCTTGTTCACCGCATGCTGTCTCTTGTTCGACCATCACTGCTTGGT
CTAAATATAATAAATTCAAATCAATTCGTTGTAAGCAAAAGGTTAGTATT
TCTAGCAGCTGTCTACTTGGTTGAAACTGCTTTTAAAATAAATCTAGCAT
TACCTTCGTCTCCCAGACTAAGGTTCTCTTCATCTCCAAATACCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037347-exon-sc0001616-1491911889:15927..16120 | TCONS_00037347-exon-sc0001616-1491911889:15927..16120 | Clytia hemisphaerica | exon |
| TCONS_00037347-exon-sc0001616-1510915933:15927..16120 | TCONS_00037347-exon-sc0001616-1510915933:15927..16120 | Clytia hemisphaerica | exon |
| TCONS_00037347-exon-sc0001616-1575043694:15927..16120 | TCONS_00037347-exon-sc0001616-1575043694:15927..16120 | Clytia hemisphaerica | exon |
| TCONS_00037347-exon-sc0001616-1491911889:20757..20821 | TCONS_00037347-exon-sc0001616-1491911889:20757..20821 | Clytia hemisphaerica | exon |
| TCONS_00037347-exon-sc0001616-1510915933:20757..20821 | TCONS_00037347-exon-sc0001616-1510915933:20757..20821 | Clytia hemisphaerica | exon |
| TCONS_00037347-exon-sc0001616-1575043694:20757..20821 | TCONS_00037347-exon-sc0001616-1575043694:20757..20821 | Clytia hemisphaerica | exon |
| TCONS_00037347-exon-sc0001616-1491911889:21031..21274 | TCONS_00037347-exon-sc0001616-1491911889:21031..21274 | Clytia hemisphaerica | exon |
| TCONS_00037347-exon-sc0001616-1510915933:21031..21274 | TCONS_00037347-exon-sc0001616-1510915933:21031..21274 | Clytia hemisphaerica | exon |
| TCONS_00037347-exon-sc0001616-1575043694:21031..21274 | TCONS_00037347-exon-sc0001616-1575043694:21031..21274 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001616 | supercontig | sc0001616:15927..21274 + |
Blast
The following BLAST results are available for this feature:
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