TCONS_00037341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037341
Unique NameTCONS_00037341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037341 ID=TCONS_00037341|Name=TCONS_00037341|organism=Clytia hemisphaerica|type=transcript|length=1790bp
taacagAAGTACTAAATAGAAAAAGTATTTAAAATGTCAGCAGCAGAGCC
AGAACCCATGGAAACAGCACCAGTTGAAGAGACTACCAAACCAGCTGAAG
ACAAACCCGCAGAACAACCTGCTGCTGAAGCAGCTCCAACTGAAACACCT
GCTGTTGTTCCTGCTGCAGAAACAGAAACTCCTGCCGCCCCTGCTGATCC
CACCCCAGCTGCTCCAGAGAAACCCGCAGAAACAGAAACACCTGCCGAAA
CACCTGCTGCAGCTCCTGCCCCAGAAAAGACAGAAAGCCCAGCACCTGCT
GCTGTAGAATTACCGAAAGTAACACCTCAGCCAAGCACTCCNNNNNNNNN
NNNNTTAACAGAAGTACTAAATAGAAAAAGTATTTAAAATGTCAGCAGCA
GAGCCAGAACCCATGGAAACAGCACCAGTTGAAGAGACTACCAAACCAGC
TGAAGACAAACCCGCAGAACAACCTGCTGCTGAAGCAGCTCCAACTGAAA
CACCTGCTGTTGTTCCTGCTGCAGAAACAGAAACTCCTGCCGCCCCTGCT
GATCCCACCCCAGCTGCTCCAGAGAAACCCGCAGAAACAGAAACACCTGC
CGAAACACCTGCTGCAGCTCCTGCCCCAGAAAAGACAGAAAGCCCAGCAC
CTGCTGCTGTAGAATTACCGAAAGTAACACCACAGCCAAGCACTCCGGTT
GTCCTTACTGAAAATGTTCAGaaaattgtaaGTGAAGAAAAAGAGGCTGC
CACAACCCCAAAGAACAGGACTGACATTCAATCACTACCAACGCGCCAAT
ATTTGGACCAATCTGTTGTCCCGATTTTACTACAAGGACTTACAGCTTTA
TCAAAAGAGAGACCAAGCGAACCAATCGACTTTTTGGCAGCATATCTCAT
GAAAAACAAACACATGTTCCAAAAGTGAATCGGACTAACTGGTATGATTA
TTTAAATACTGCAGTCCTATGAAAAATCACTCACAATGACTTAAAAAATT
GCTTGGTAATGATCGAAAGTTGCGGTGGCAAAATATGACTATTGAATTTT
CTTCGTTCGAAAAAGCACACACTCTTTGTGTATAGATTGCAAACATTGTA
TATATTTAGATGGCTGATTTGCGTGTGTGTGATATGGATaaccaataaaa
acaaaagtaggCGGGAGAGAAGTATGGTTTGGACATTATATTCGATACAA
CTTGCGTGTGTGTTTTCAACAATTATGATTCTGATGGATAAAAATATAAC
TTTACTTTCGCTTTGAAGAAGTGATGCACAGTTGATTGATGCTTTGATTC
TTTTGGTTCAATTTGGTTGGAGATAATGATATGCAAAACTTTTTAGTTGA
TAtttattgcttttttttattttttgttacagTTTTGCTAGATGAAAAAA
CCCTAAGAGACCTTATTtagttgtaatttttttaactgtTCTGCTACACA
TTGTTTTTAGAGatatataaaaagaagcaaaagcAAACTTCAGATGTATC
ATTTAAATTCCTCTTCAGAACGTTTAAAATTCTTGACCTTTATTTCGGAT
ATTCAAACTAGGACGAGTCATAAATTGTAACATTATCTTGGtcaaatgac
aaaaaaatatcGTCCGTTCCAGTATCAAAACCCTTAGCAAGTCGTTAAAT
TGAAATCAGTTGAAAtcgctttttgatattgaatcaTTTGTAAAATTTAA
GATAGTATATTCCTTTCGAAACCATAAAACTTTGAGTGTCCTATTGAACT
AAATCTGGTCTTTATGTTACCTTTAAGATTATATTTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00037341-protein

>TCONS_00037341-protein ID=TCONS_00037341-protein|Name=TCONS_00037341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MSAAEPEPMETAPVEETTKPAEDKPAEQPAAEAAPTETPAVVPAAETETP
AAPADPTPAAPEKPAETETPAETPAAAPAPEKTESPAPAAVELPKVTPQP
STPVVLTENVQKIVSEEKEAATTPKNRTDIQSLPTRQYLDQSVVPILLQG
LTALSKERPSEPIDFLAAYLMKNKHMFQK
Run BLAST on NCBI

transcript from alignment at sc0001615:5692..8499-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037341 ID=TCONS_00037341|Name=TCONS_00037341|organism=Clytia hemisphaerica|type=transcript|length=2808bp|location=Sequence derived from alignment at sc0001615:5692..8499- (Clytia hemisphaerica)
TAACAGAAGTACTAAATAGAAAAAGTATTTAAAATGTCAGCAGCAGAGCC
AGAACCCATGGAAACAGCACCAGTTGAAGAGACTACCAAACCAGGTACTT
TTTAAATATTTTAAAGCTATATTATTGCAGTAGGTAGGTGCTAATTTTTC
TTTAATATGCTCTGTATTCTTTATTTCAGTTAAATTTATTGATAAGGAAA
TGCATAGGACCATAGGTGAAATTAGGTAGAAATCCTTTGTTTGAAAAGGT
TGCTAGTGGATAGGTTAAAGGAGTAGCAATAATTTGATATTTTATATCTT
TAGCTGAAGACAAACCCGCAGAACAACCTGCTGCTGAAGCAGCTCCAACT
GAAACACCTGCTGTTGTTCCTGCTGCAGAAACAGAAACTCCTGCCGCCCC
TGCTGATCCCACCCCAGCTGCTCCAGAGAAACCCGCAGAAACAGAAACAC
CTGCCGAAACACCTGCTGCAGCTCCTGCCCCAGAAAAGACAGAAAGCCCA
GCACCTGCTGCTGTAGAATTACCGAAAGTAACACCTCAGCCAAGCACTCC
NNNNNNNNNNNNNTTAACAGAAGTACTAAATAGAAAAAGTATTTAAAATG
TCAGCAGCAGAGCCAGAACCCATGGAAACAGCACCAGTTGAAGAGACTAC
CAAACCAGGTACTTTTTAAATATTTTAAAGCTATATGATTGCAGTAGGTA
GGTGCCAATTTTTCTTTAATATGCTCTGTATTCTTTATTTCAGTTAAATT
TATTGATAAGGAAATACATAGGTCCATAGGTGAAATTAGGTAGAAATCCT
TTGTTTGAAAAGGTTAAAGGAGTAGCAATAATTTGATATTTTATATCTTT
AGCTGAAGACAAACCCGCAGAACAACCTGCTGCTGAAGCAGCTCCAACTG
AAACACCTGCTGTTGTTCCTGCTGCAGAAACAGAAACTCCTGCCGCCCCT
GCTGATCCCACCCCAGCTGCTCCAGAGAAACCCGCAGAAACAGAAACACC
TGCCGAAACACCTGCTGCAGCTCCTGCCCCAGAAAAGACAGAAAGCCCAG
CACCTGCTGCTGTAGAATTACCGAAAGTAACACCACAGCCAAGCACTCCG
GTTGTCCTTACTGAAAATGTTCAGGTAGCAAACGTATTTTTCATTTTTCT
CGTTTATTTTTACTTTCACTTGAAGTGGACTTTCGTGAAAGAATACCAAT
TTTAAAACCAAATTTGGTCTGAATTCTTTATGCTACTAAAACAACTTAGA
TATAGGCCAGACAACAAAATGAAAACCATACATACACTGACTGACATCAT
CCTTGTTAATGTTTTTTAGAAAATTGTAAGTGAAGAAAAAGAGGCTGCCA
CAACCCCAAAGAACAGGACTGACATTCAATCACTACCAACGCGCCAATAT
TTGGACCAATCTGTTGTCCCGATTTTACTACAAGGACTTACAGCTTTATC
AAAAGAGAGGTAGATATTCCGAATTATTCAGTTAAAAAAACTGAATCACA
TTTTGCCATAATTGTTTTCAGAGTATTTCAATGACAACACTGCATATTGC
CCTTCAATTTGAAGAAACAATTCGTTTCAGAAAGGATGAATTTTGCAAAT
GATGGCTAGAATTACCCTCTGAGTCTAATAATTTCACTTATTTTTAAGCT
TAAAAAGTCTTTTAGGAAGTTTCTCTTGCAAATAAGACACTTTTCCTCTA
TGCCTTCCCCTTAGCAGTTGTTCAAATTTTTATTTTAGCTAGTTTCAAAG
CATAGCTTTCTTCCCATCCGAAAATACCAAGACTCTGGTGTGTAAAATTA
GTTTTTCGTTTGCAATAAAACTGATAGACTGATAAAAAAAATCAACTTGG
AAAATTTTATAAAATGTATTTTTTTGCAGACCAAGCGAACCAATCGACTT
TTTGGCAGCATATCTCATGAAAAACAAACACATGTTCCAAAAGTGAATCG
GACTAACTGGTATGATTATTTAAATACTGCAGTCCTATGAAAAATCACTC
ACAATGACTTAAAAAATTGCTTGGTAATGATCGAAAGTTGCGGTGGCAAA
ATATGACTATTGAATTTTCTTCGTTCGAAAAAGCACACACTCTTTGTGTA
TAGATTGCAAACATTGTATATATTTAGATGGCTGATTTGCGTGTGTGTGA
TATGGATAACCAATAAAAACAAAAGTAGGCGGGAGAGAAGTATGGTTTGG
ACATTATATTCGATACAACTTGCGTGTGTGTTTTCAACAATTATGATTCT
GATGGATAAAAATATAACTTTACTTTCGCTTTGAAGAAGTGATGCACAGT
TGATTGATGCTTTGATTCTTTTGGTTCAATTTGGTTGGAGATAATGATAT
GCAAAACTTTTTAGTTGATATTTATTGCTTTTTTTTATTTTTTGTTACAG
TTTTGCTAGATGAAAAAACCCTAAGAGACCTTATTTAGTTGTAATTTTTT
TAACTGTTCTGCTACACATTGTTTTTAGAGATATATAAAAAGAAGCAAAA
GCAAACTTCAGATGTATCATTTAAATTCCTCTTCAGAACGTTTAAAATTC
TTGACCTTTATTTCGGATATTCAAACTAGGACGAGTCATAAATTGTAACA
TTATCTTGGTCAAATGACAAAAAAATATCGTCCGTTCCAGTATCAAAACC
CTTAGCAAGTCGTTAAATTGAAATCAGTTGAAATCGCTTTTTGATATTGA
ATCATTTGTAAAATTTAAGATAGTATATTCCTTTCGAAACCATAAAACTT
TGAGTGTCCTATTGAACTAAATCTGGTCTTTATGTTACCTTTAAGATTAT
ATTTTCAG

Coding sequence (CDS) from alignment at sc0001615:5692..8499-

>TCONS_00037341 ID=TCONS_00037341|Name=TCONS_00037341|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at sc0001615:5692..8499- (Clytia hemisphaerica)
ACCAAGCGAACCAATCGACTTTTTGGCAGCATATCTCATGAAAAACAAAC
ACATGTTCCAAAAGTGAAAAATTGTAAGTGAAGAAAAAGAGGCTGCCACA
ACCCCAAAGAACAGGACTGACATTCAATCACTACCAACGCGCCAATATTT
GGACCAATCTGTTGTCCCGATTTTACTACAAGGACTTACAGCTTTATCAA
AAGAGAGCTGAAGACAAACCCGCAGAACAACCTGCTGCTGAAGCAGCTCC
AACTGAAACACCTGCTGTTGTTCCTGCTGCAGAAACAGAAACTCCTGCCG
CCCCTGCTGATCCCACCCCAGCTGCTCCAGAGAAACCCGCAGAAACAGAA
ACACCTGCCGAAACACCTGCTGCAGCTCCTGCCCCAGAAAAGACAGAAAG
CCCAGCACCTGCTGCTGTAGAATTACCGAAAGTAACACCACAGCCAAGCA
CTCCGGTTGTCCTTACTGAAAATGTTCAGATGTCAGCAGCAGAGCCAGAA
CCCATGGAAACAGCACCAGTTGAAGAGACTACCAAACCAGACCAAGCGAA
CCAATCGACTTTTTGGCAGCATATCTCATGAAAAACAAACACATGTTCCA
AAAGTGAAAAATTGTAAGTGAAGAAAAAGAGGCTGCCACAACCCCAAAGA
ACAGGACTGACATTCAATCACTACCAACGCGCCAATATTTGGACCAATCT
GTTGTCCCGATTTTACTACAAGGACTTACAGCTTTATCAAAAGAGAGCTG
AAGACAAACCCGCAGAACAACCTGCTGCTGAAGCAGCTCCAACTGAAACA
CCTGCTGTTGTTCCTGCTGCAGAAACAGAAACTCCTGCCGCCCCTGCTGA
TCCCACCCCAGCTGCTCCAGAGAAACCCGCAGAAACAGAAACACCTGCCG
AAACACCTGCTGCAGCTCCTGCCCCAGAAAAGACAGAAAGCCCAGCACCT
GCTGCTGTAGAATTACCGAAAGTAACACCACAGCCAAGCACTCCGGTTGT
CCTTACTGAAAATGTTCAGATGTCAGCAGCAGAGCCAGAACCCATGGAAA
CAGCACCAGTTGAAGAGACTACCAAACCAGACCAAGCGAACCAATCGACT
TTTTGGCAGCATATCTCATGAAAAACAAACACATGTTCCAAAAGTGAAAA
ATTGTAAGTGAAGAAAAAGAGGCTGCCACAACCCCAAAGAACAGGACTGA
CATTCAATCACTACCAACGCGCCAATATTTGGACCAATCTGTTGTCCCGA
TTTTACTACAAGGACTTACAGCTTTATCAAAAGAGAGCTGAAGACAAACC
CGCAGAACAACCTGCTGCTGAAGCAGCTCCAACTGAAACACCTGCTGTTG
TTCCTGCTGCAGAAACAGAAACTCCTGCCGCCCCTGCTGATCCCACCCCA
GCTGCTCCAGAGAAACCCGCAGAAACAGAAACACCTGCCGAAACACCTGC
TGCAGCTCCTGCCCCAGAAAAGACAGAAAGCCCAGCACCTGCTGCTGTAG
AATTACCGAAAGTAACACCACAGCCAAGCACTCCGGTTGTCCTTACTGAA
AATGTTCAGATGTCAGCAGCAGAGCCAGAACCCATGGAAACAGCACCAGT
TGAAGAGACTACCAAACCAGACCAAGCGAACCAATCGACTTTTTGGCAGC
ATATCTCATGAAAAACAAACACATGTTCCAAAAGTGAAAAATTGTAAGTG
AAGAAAAAGAGGCTGCCACAACCCCAAAGAACAGGACTGACATTCAATCA
CTACCAACGCGCCAATATTTGGACCAATCTGTTGTCCCGATTTTACTACA
AGGACTTACAGCTTTATCAAAAGAGAGCTGAAGACAAACCCGCAGAACAA
CCTGCTGCTGAAGCAGCTCCAACTGAAACACCTGCTGTTGTTCCTGCTGC
AGAAACAGAAACTCCTGCCGCCCCTGCTGATCCCACCCCAGCTGCTCCAG
AGAAACCCGCAGAAACAGAAACACCTGCCGAAACACCTGCTGCAGCTCCT
GCCCCAGAAAAGACAGAAAGCCCAGCACCTGCTGCTGTAGAATTACCGAA
AGTAACACCACAGCCAAGCACTCCGGTTGTCCTTACTGAAAATGTTCAGA
TGTCAGCAGCAGAGCCAGAACCCATGGAAACAGCACCAGTTGAAGAGACT
ACCAAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022125XLOC_022125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037341-exon-sc0001615-1575043694:8406..8499TCONS_00037341-exon-sc0001615-1575043694:8406..8499Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1575043694:7842..8196TCONS_00037341-exon-sc0001615-1575043694:7842..8196Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1575043694:7376..7647TCONS_00037341-exon-sc0001615-1575043694:7376..7647Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1575043694:7041..7180TCONS_00037341-exon-sc0001615-1575043694:7041..7180Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1575043694:5692..6620TCONS_00037341-exon-sc0001615-1575043694:5692..6620Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1510915933:8406..8499TCONS_00037341-exon-sc0001615-1510915933:8406..8499Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1510915933:7842..8196TCONS_00037341-exon-sc0001615-1510915933:7842..8196Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1510915933:7376..7647TCONS_00037341-exon-sc0001615-1510915933:7376..7647Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1510915933:7041..7180TCONS_00037341-exon-sc0001615-1510915933:7041..7180Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1510915933:5692..6620TCONS_00037341-exon-sc0001615-1510915933:5692..6620Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1491911889:8406..8499TCONS_00037341-exon-sc0001615-1491911889:8406..8499Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1491911889:7842..8196TCONS_00037341-exon-sc0001615-1491911889:7842..8196Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1491911889:7376..7647TCONS_00037341-exon-sc0001615-1491911889:7376..7647Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1491911889:7041..7180TCONS_00037341-exon-sc0001615-1491911889:7041..7180Clytia hemisphaericaexon
TCONS_00037341-exon-sc0001615-1491911889:5692..6620TCONS_00037341-exon-sc0001615-1491911889:5692..6620Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037341-proteinTCONS_00037341-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001615supercontigsc0001615:5692..8499 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
117.556	112.687	201.465	227.188	32.6406	21.9863	35.0958	36.4459	27.5427	25.723	37.8307	22.4345	29.4954	22.8182	24.9588	27.088	84.8114	91.7042	24.3523	28.2935	83.262	93.8973	106.931	97.2075	35.7233	57.2143	31.5357	27.2141	46.3848	48.2044
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007858Dpy-30_motif
Blast
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BLAST of TCONS_00037341 vs. Swiss-Prot (Human)
Match: DPY30 (Protein dpy-30 homolog OS=Homo sapiens GN=DPY30 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.124e-23
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 2 
Query:  671 KVTPQPSTPVVLTENVQKIVSEEK-EAATTPKNRTDIQSLPTRQYLDQSVVPILLQGLTALSKERPSEPIDFLAAYLMKNKHMFQ 922
            +V   P +   LT+NV++IV  EK  A  + K + D+QSLPTR YLDQ+VVPILLQGL  L+KERP  PI+FLA+YL+KNK  F+
Sbjct:   12 QVAENPHSEYGLTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQFE 96
The following BLAST results are available for this feature:
BLAST of TCONS_00037341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPY301.124e-2356.47Protein dpy-30 homolog OS=Homo sapiens GN=DPY30 PE... [more]
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