TCONS_00037335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037335
Unique NameTCONS_00037335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1127

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037335 ID=TCONS_00037335|Name=TCONS_00037335|organism=Clytia hemisphaerica|type=transcript|length=1127bp
GCGTCATCGAACCGTCACCAAAGCCTTCAAACAAACTAAGAGCTTGAATC
GAGAAAGTGGTCAAGGCAGGGCTACTTGCAAATTCCAAGAAGAACTAAAC
GACCTTGAAGGTCACAAACCTGACGTAGTACCAGATTACACCATTGCCTC
TACAGGTGAGGTTACACGTAGAAATTCAAAGAAGGATGACCAAGAGGTCC
CATCTACATCAGCTAGCACTGCACAACAATCAACCCCACCACCAAAAGTA
AAGTCAAAGCCCAAACCGAAAGAAGGAAGAAGGAGAAATGAAatggtaat
tttcatggaagGATATCAGGATGGTTATCCCGTCAAAGATTCTGCAAATA
CAAGAGgtCTTGCTGCATGGGATAATAAGGTAAAGTATCGGGCGGTCAAT
ATGGAATCTCACAAGTTATACCGAAAAGCCTCGTACAACTTGATAAAGTT
CGATTATAATGAATTTTCTGACTCCTCAGATGAAGACACTGTAACCGGGA
AAGCAGAGAACAAAAAGAAAGTGGATGCTGCCGTTGGAGGCTGCTGTTGG
GTCGAAAGTGGATACAAGCGCTCTTTTAAACTTTGtcaactccaaatttg
aggagTTCATTAAGTCGAATACAGCCGAACGCTCATTGAAAGACAAGATT
AGACGTGTATTTGAATGTACAATATGCTATGTTCCCCGTCCAAACTGTTT
CTATTGTTGCCCTAATTGTGGACGTTATCTCGGTTGTTTCCATTGCATGA
AAATATTATCTTAATGTCCATTTTGTCGAAGGCCGTTTGTTAATCAGGTA
AAAGCATTTTTTATACCTGGAATCGAGGAGGTGGTAGATATACCACCTTA
CATCCCAGACGCTCCGGAACTTCCCACGGTGGTAAAAAGTAGCTATATTT
TGCCCACATAGACTAAGCCTGTGACGTCACACAGCGAATTATGTTTAGGT
TTACAGAGCCTTGTAGAATCATCAAAATGCCTTCAAACTTGGTACGtaac
ttcaaaataataaaagaaaaatttgtgtctcgaaaatttttagatttccc
gatttcccgattttcaaaaacggAAAACCCTcatttttacccccgtcttt
ggtaAAAAATCAGACCTAGCAGAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00037335-protein

>TCONS_00037335-protein ID=TCONS_00037335-protein|Name=TCONS_00037335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
RHRTVTKAFKQTKSLNRESGQGRATCKFQEELNDLEGHKPDVVPDYTIAS
TGEVTRRNSKKDDQEVPSTSASTAQQSTPPPKVKSKPKPKEGRRRNEMVI
FMEGYQDGYPVKDSANTRGLAAWDNKVKYRAVNMESHKLYRKASYNLIKF
DYNEFSDSSDEDTVTGKAENKKKVDAAVGGCCWVESGYKRSFKLCQLQI
Run BLAST on NCBI

transcript from alignment at sc0001614:17996..19320-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037335 ID=TCONS_00037335|Name=TCONS_00037335|organism=Clytia hemisphaerica|type=transcript|length=1325bp|location=Sequence derived from alignment at sc0001614:17996..19320- (Clytia hemisphaerica)
GCGTCATCGAACCGTCACCAAAGCCTTCAAACAAACTAAGAGCTTGAATC
GAGAAAGTGGTCAAGGCAGGGCTACTTGCAAATTCCAAGAAGAACTAAAC
GACCTTGAAGGTCACAAACCTGACGTAGTACCAGATTACACCATTGCCTC
TACAGGTGAGGTTACACGTAGAAATTCAAAGAAGGATGACCAAGAGGTCC
CATCTACATCAGCTAGCACTGCACAACAATCAACCCCACCACCAAAAGTA
AAGTCAAAGCCCAAACCGAAAGAAGGAAGAAGGAGAAATGAAATGGTAAT
TTTCATGGAAGGATATCAGGATGGTTATCCCGTCAAAGATTCTGCAAATA
CAAGAGGTAAGATTATTTAAAAATGATATCTTGCTTTAGAAAAATCCAAA
GCTTGTCTGTAAAATACCAATGAAGCAGGTGGCCGACCTAAAATTCTGAA
AATCACAATAAATTTTCGGGTGATTTTTTTATCTTCTGTGATTATTCCAT
AGCACAAACATAAAAATAATGATTGTTTGCTATAGCTTTACTTTTATTTT
ATAGGTCTTGCTGCATGGGATAATAAGGTAAAGTATCGGGCGGTCAATAT
GGAATCTCACAAGTTATACCGAAAAGCCTCGTACAACTTGATAAAGTTCG
ATTATAATGAATTTTCTGACTCCTCAGATGAAGACACTGTAACCGGGAAA
GCAGAGAACAAAAAGAAAGTGGATGCTGCCGTTGGAGGCTGCTGTTGGGT
CGAAAGTGGATACAAGCGCTCTTTTAAACTTTGTCAACTCCAAATTTGAG
GAGTTCATTAAGTCGAATACAGCCGAACGCTCATTGAAAGACAAGATTAG
ACGTGTATTTGAATGTACAATATGCTATGTTCCCCGTCCAAACTGTTTCT
ATTGTTGCCCTAATTGTGGACGTTATCTCGGTTGTTTCCATTGCATGAAA
ATATTATCTTAATGTCCATTTTGTCGAAGGCCGTTTGTTAATCAGGTAAA
AGCATTTTTTATACCTGGAATCGAGGAGGTGGTAGATATACCACCTTACA
TCCCAGACGCTCCGGAACTTCCCACGGTGGTAAAAAGTAGCTATATTTTG
CCCACATAGACTAAGCCTGTGACGTCACACAGCGAATTATGTTTAGGTTT
ACAGAGCCTTGTAGAATCATCAAAATGCCTTCAAACTTGGTACGTAACTT
CAAAATAATAAAAGAAAAATTTGTGTCTCGAAAATTTTTAGATTTCCCGA
TTTCCCGATTTTCAAAAACGGAAAACCCTCATTTTTACCCCCGTCTTTGG
TAAAAAATCAGACCTAGCAGAAAAT

Coding sequence (CDS) from alignment at sc0001614:17996..19320-

>TCONS_00037335 ID=TCONS_00037335|Name=TCONS_00037335|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0001614:17996..19320- (Clytia hemisphaerica)
GTCTTGCTGCATGGGATAATAAGGTAAAGTATCGGGCGGTCAATATGGAA
TCTCACAAGTTATACCGAAAAGCCTCGTACAACTTGATAAAGTTCGATTA
TAATGAATTTTCTGACTCCTCAGATGAAGACACTGTAACCGGGAAAGCAG
AGAACAAAAAGAAAGTGGATGCTGCCGTTGGAGGCTGCTGTTGGGTCGAA
AGTGGATACAAGCGCTCTTTTAAACTTTGTCAACTCCAAATTTGACGTCA
TCGAACCGTCACCAAAGCCTTCAAACAAACTAAGAGCTTGAATCGAGAAA
GTGGTCAAGGCAGGGCTACTTGCAAATTCCAAGAAGAACTAAACGACCTT
GAAGGTCACAAACCTGACGTAGTACCAGATTACACCATTGCCTCTACAGG
TGAGGTTACACGTAGAAATTCAAAGAAGGATGACCAAGAGGTCCCATCTA
CATCAGCTAGCACTGCACAACAATCAACCCCACCACCAAAAGTAAAGTCA
AAGCCCAAACCGAAAGAAGGAAGAAGGAGAAATGAAATGGTAATTTTCAT
GGAAGGATATCAGGATGGTTATCCCGTCAAAGATTCTGCAAATACAAGAG
GTCTTGCTGCATGGGATAATAAGGTAAAGTATCGGGCGGTCAATATGGAA
TCTCACAAGTTATACCGAAAAGCCTCGTACAACTTGATAAAGTTCGATTA
TAATGAATTTTCTGACTCCTCAGATGAAGACACTGTAACCGGGAAAGCAG
AGAACAAAAAGAAAGTGGATGCTGCCGTTGGAGGCTGCTGTTGGGTCGAA
AGTGGATACAAGCGCTCTTTTAAACTTTGTCAACTCCAAATTTGACGTCA
TCGAACCGTCACCAAAGCCTTCAAACAAACTAAGAGCTTGAATCGAGAAA
GTGGTCAAGGCAGGGCTACTTGCAAATTCCAAGAAGAACTAAACGACCTT
GAAGGTCACAAACCTGACGTAGTACCAGATTACACCATTGCCTCTACAGG
TGAGGTTACACGTAGAAATTCAAAGAAGGATGACCAAGAGGTCCCATCTA
CATCAGCTAGCACTGCACAACAATCAACCCCACCACCAAAAGTAAAGTCA
AAGCCCAAACCGAAAGAAGGAAGAAGGAGAAATGAAATGGTAATTTTCAT
GGAAGGATATCAGGATGGTTATCCCGTCAAAGATTCTGCAAATACAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022119XLOC_022119Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037335-proteinTCONS_00037335-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037335-exon-sc0001614-1575043694:18965..19320TCONS_00037335-exon-sc0001614-1575043694:18965..19320Clytia hemisphaericaexon
TCONS_00037335-exon-sc0001614-1575043694:17996..18766TCONS_00037335-exon-sc0001614-1575043694:17996..18766Clytia hemisphaericaexon
TCONS_00037335-exon-sc0001614-1510915933:18965..19320TCONS_00037335-exon-sc0001614-1510915933:18965..19320Clytia hemisphaericaexon
TCONS_00037335-exon-sc0001614-1510915933:17996..18766TCONS_00037335-exon-sc0001614-1510915933:17996..18766Clytia hemisphaericaexon
TCONS_00037335-exon-sc0001614-1491911889:18965..19320TCONS_00037335-exon-sc0001614-1491911889:18965..19320Clytia hemisphaericaexon
TCONS_00037335-exon-sc0001614-1491911889:17996..18766TCONS_00037335-exon-sc0001614-1491911889:17996..18766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001614supercontigsc0001614:17996..19320 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.695642	0.5653	1.00643	1.14808	1.83299	1.57082	1.54563	1.73375	1.68106	2.50569	1.52465	1.4851	2.98644	2.54035	5.8027	5.0122	3.30124	2.9005	5.75569	7.62623	3.15885	3.57745	4.34159	5.34487	6.824	10.5486	3.54295	4.79331	14.1124	10.5638
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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