TCONS_00037280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037280
Unique NameTCONS_00037280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037280 ID=TCONS_00037280|Name=TCONS_00037280|organism=Clytia hemisphaerica|type=transcript|length=1989bp
TGTTCAGAAAATTGCAAATGTTTTGCCAAGATATCCCAGAGATATACCTG
TTAtagtttttaaatttgatggGAAGGATAATAAATCTAAAGAGCTCAGA
GTACGTAGACAAAAGGTTGTTGATGCTTTAAAGTGGCTAACCGGTAAAAA
TGAGAAGGGTGAACCAAACAACATCAGATACCAAGATGTCACTATTGATG
AAAATAGATTTGATAGTTTACCTGAAGATGATTTTCTTAAAATGCCTATG
aatgcaaattttgaaaattatgaaaaagatatttttaatgatGATGACTG
TTGTAGTGATGACGAGGTTCTTCCTGATATGGGTCCTATTCCTgaggaaa
atgatgaaaaagttTATGACTGTAATACTGAAATGGGAAGTTTTAGTTTT
ATTCCAACTAAGATTAAGTCCAAAATGGAGAAACATATTTTAAATGATTC
AGTTCTTAAACCGGAAGCAATTGATGTTGGAAAAGAACCATTAAATGAGT
TCACCACTGAGTATTTAGCTACATTAACATTTCCAACACTATTTCCTGAT
GGGAAAGGAGACCCCACTAGATTTAGCACGAAACGGTCTATAGCAAAAAG
TGATACAGAATCTTTCTCAGCAAAAATTAAACATTTGATTAAATTTGGTG
AGTTTATTGATGGTACAGATTTGCGGCCCATTCTCGTTTTGGATTTTGGG
CCTATAATATGCTATATTGCAGACGACTTTTAGGACAAGGAAGCTTTTAC
TTGAAGCAAAATCCAGGAGAACCTAACTTGACTATTGATGAGTTACAAGA
AATGATTAGAGCTGGTACTTATAGTAGtgttatgaaaaaacttttgagat
aTGCTAAGAACATTACAGGAACAAATGCTTATTGGAGTCAAGCTAAAGAG
CAGTTAAAAGCTACAATAAACCAAGTTGGCTCACCAAcaattttttggac
tttgtcttGTGCAGAGTTTCACTGGCCAGAGTATCATGCCTTATTTTCTA
CTGATGAGAAGGCTGATTCAAGCACTTTACGTGAGAATATAATTAACAAT
CCACATTTGATCGATTGGTTCTTTACAGTCagagttgaaaattttgttaa
gCATTGGCTTTATGAGACTCTTGAGGCTGAATGGCATTGGTACAGATTTG
AATACGCTGTTATGCGTGGTTCAATTCATTGCCATGGTGTCGCCAAGCTT
AAAAATGATCCAGGACTATGTAAACTTACACAAAAAGCCTTAGAAGGTCA
TCTAGCTGAGAAAAAATTGTCTGAAACTGAtgatgatattgaaaataata
gAGTACAATTACAGGTTATTGTTAATGAAGGAAATTTATCTCAATTCAAA
CACAATTCAACAAAGTAACTAAAGCCAAAAACAAAGGTTATTTTCACAAC
ATTCAAATCGATCTGAAACAGTAATGTATCCATGCAATATCAAACCATAT
TTCAAAAACGTTTGGTTGATTTTAAATCCTGTAATTAATGTTGTCCATAA
TATGATCAAATTGTAAAGGATATGTACTTTTAGAAGTAAATTAACGTTCG
TTATTGGCACCTTGCTTCTGATTAAACCTTTCATTGAATATAGTATTGCA
GTCACGTATGAAATTTATTAACCCCCGTTGCAGCCCGTTGTCATGTTTTC
CTATTAATGTTCTGGATCCTGTGTCACCTACGCATGTTATTGAAATAGAG
TTTAACAACGATATGCATTTGCTGATGACCAAGATATATTTTCTCAATCT
TCCAGTTAAAAATTGTGGCTGAATAAAGTATATACATTCTGGCTTAAACA
TGGATATTATTGTATTCCCTGGTTAACatcaaaaatacttacaaattGCT
GCTGTTCataaatttttgttatttgCTGTTATCATTATATGACGTTGGTT
TTTGATTGCAAATGGAAGTTGAATTGTGTTAATAGACAATTTTTACTAGT
ATTTTTGAATCAATTGCAATTTTCATTTGTTGAATTTGC
Run BLAST on NCBI

transcript from alignment at sc0001607:29989..35087+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037280 ID=TCONS_00037280|Name=TCONS_00037280|organism=Clytia hemisphaerica|type=transcript|length=5099bp|location=Sequence derived from alignment at sc0001607:29989..35087+ (Clytia hemisphaerica)
TGTTCAGAAAATTGCAAATGTTTTGCCAAGATATCCCAGAGATATACCTG
TTAtagtttttaaatttgatggGAAGGATAATAAATCTAAAGAGCTCAGA
GTACGTAGACAAAAGGTTGTTGATGCTTTAAAGTGGCTAACCGGTAAAAA
TGAGAAGGGTGAACCAAACAACATCAGATACCAAGATGTCACTATTGATG
AAAATAGATTTGATAGTTTACCTGAAGATGATTTTCTTAAAATGCCTATG
aatgcaaattttgaaaattatgaaaaagatatttttaatgatGATGACTG
TTGTAGTGATGACGAGGTTCTTCCTGATATGGGTCCTATTCCTgaggaaa
atgatgaaaaagttTATGACTGTAATACTGAAATGGGAAGTTTTAGTTTT
ATTCCAACTAAGATTAAGTCCAAAATGGAGAAACATATTTTAAATGATTC
AGTTCTTAAACCGGAAGCAATTGATGTTGGAAAAGAACCATTAAATGAGT
TCACCACTGAGTATTTAGCTACATTAACATTTCCAACACTATTTCCTGAT
GGGAAAGGAGACCCCACTAGATTTAGCACGAAACGGTCTATAGCAAAAAG
TGATACAGAATCTTTCTCAGCAAAAATTAAACATTTGATTAAATTTGGTG
AGTTTATTGATGGTACAGATTTGCGGCCCATTCTCGTTTTGGATTTTGGG
CCTATAATATGCTATATTGCAGACGACTTTTAGGACAAGGAAGCTTTTAC
TTGAAGCAAAATCCAGGAGAACCTAACTTGACTATTGATGAGTTACAAGA
AATGATTAGAGCTGGTACTTATAGTAGtgttatgaaaaaacttttgagat
aTGCTAAGAACATTACAGGAACAAATGCTTATTGGAGTCAAGCTAAAGAG
CAGTTAAAAGCTACAATAAACCAAGTTGGCTCACCAAcaattttttggac
tttgtcttGTGCAGAGTTTCACTGGCCAGAGTATCATGCCTTATTTTCTA
CTGATGAGAAGGCTGATTCAAGCACTTTACGTGAGAATATAATTAACAAT
CCACATTTGATCGATTGGTTCTTTACAGTCagagttgaaaattttgttaa
gCATTGGCTTTATGAGACTCTTGAGGCTGAATGGCATTGGTACAGATTTG
AATACGCTGTTATGCGTGGTTCAATTCATTGCCATGGTGTCGCCAAGCTT
AAAAATGATCCAGGACTATGTAAACTTACACAAAAAGCCTTAGAAGGTCA
TCTAGCTGAGAAAAAATTGTCTGAAACTGAtgatgatattgaaaataata
gAGTACAATTACAGGTTATTGTTAATGAAGGTAAAGCTGCAGCACAGCAA
GTTTGTGACTATGTTGATACTTTGGTAACTGCTTGTAATCCATGCACACC
TGAGGAACAGCTGGGTAAAACCAAAAGTTCATCCTTGTAAGAGAAAGCTT
GAAGACTaaaatgatgatgattttgataATGATTATGCTGATTTAGTTAA
TTGTGTTCAGAGACATACTAAATGTAGCTCAGCTTACTGTTTACGTAAGA
ATGACGGTGAACAATATTGCCGGTTTAAATTTCCGTTTGAAGACTGTGAT
AAAACTTATCTTGAATTTGAAGAAGTAACTTCTAAGAAATACGGTAAGCA
ATTTAGACCCAAGATTGTCTTGAAGAGAAATGATTCCAGAGTTAATAGAC
ATCAGCGGCTGCAATTGCAATCATGGAGAGGTAATTGTGATATACAGCCA
ATTATAGATTATAATGCATGtttagaatatctcgcaaagtATGCTTCAAA
AGCTGAAAAGATTTCTAATGTTGCTAGAGATGCATTTGTCTCGGTCCCGT
CTCGGTAGTTGAAAATCTAAAGGGAACGGAACAAATGAGATCAGTTAAGC
TAAAATTGATTATAAAAGCTGTCGGTGAAAGAGATTTTAGTGTACAAGAG
GTAGTGCACCATATATTGTCACTGAAACTGATAAGTTCATCATTTCAAGT
ATTCAATGTCTCTGTTGACGGTTCAAGAAAGATTGAAATTAGCAATGAAG
AAATTGTCACTGAAGCATCTACTGTAGACAATTATGCTAACAGAGAAAAT
CTTCAAGGTTGTGATAGAACTATTTTGGAAAGTAATTTTGTTCAATTTGT
ATCAGACTACACAGTGACAAAAGAagttataaaaagaagaaaaaagcctG
TAATTGTTAGAGCATTCCCAAGTCCTCCAGCAAATCCAAAAGGACCTAAT
TATGGTGCTTTTTGCAAATATCAATTGCTTAAATATAAGCCATGGAGGTC
CAGGACAAGTGACGCTTGGGATAATTTAGATGGCGAAGATTCTGAAATGT
TTTGCCTGAAATGGAATGAGTTTTTGCAAAGTGAACAAGGTCAAAAACTT
GTTCCGAACTGGAGAAGAGAATTTCATAATGCAGAACTGTATTTTGAAAG
ATCAGAACATGATGATTATGAGGAAAATGTCGAAGGTGAACGAGAAGAGT
GGATGCACTTGGCTGACTTATGTGCTAATGATAATGATTCAGTTAATGAT
GAGACTAGTGTCAATAACATACAATATTGGCAGAATTTTAGACAAAATTA
TACTGAAGAACAAATTGGCAATATGGTTTCTTGGCTTGATAAGAAAAAAG
CAGAAGTGTctgaaagttttgatttatgcTTTGAACTTAATGTTGAATCA
CTCAATGAGGCTCAAAGAAGGGCATTTGACATTGTACTTGATCATGAGAA
AAATCCACATGAACAATTATTGATGATGATAACTGGATTAGCCGGAAGTG
GAAAATCATTTCTAATTAATAATATTAGGGCATTATTGCAAGAGAAATGT
ATAGTTTCAGCCTATTTTGGAATAGCTGCATTCAATGTAAAAGGCAAAAC
TTTGCATTCATTGTTAAAGTTACCAATACGAGGTAGAAATCTTAAAGATT
TGAAGGGTCCTGCTCTTTTACAATTACAGGAGAAATTAAATGGTGTAAAA
TATATCATTATTGATGAATACTCTGTTGTCGGCCAGAACTTACTAGGTTG
GATTGATAAGCGGTGCCGTCAAGGCACTGGTGATTCAGATAAACCATTTG
GAGGAATCTCAATAATTTTAGTTGGAGATATTGCTCAGCTACCACCTGTT
GGAGATAAAgttctatatcataaaaaacCTAATGGTGAAATAGGCACTAT
GGGGTTTTGTATGTATAGAAAATTTACTAAAGTTGTTAAACTCACTGTTA
ATGAAAGATCAAAAGGTGATAATATTGAACAAGAAAAGTTTAGATCTGCT
TTATACAGATTAAGAAATGGAGATTCAACTGAGGAAGATTGGCAGATGTT
TTTATCTAGAACACCTGCCAACTTAACAGAAGAAGTTGACAAGAAAAGTT
TTGTGAAATTgtcattttcaaatgaaaaagtagcTTGTGATAATCACGAG
GCTTTGATGAGTTTAAATGTACCTGTAGCACAAATAAATGCAAGGCATAG
TAATAAAGCTTCAGCTAAGTTATCATCAGACGATATGGGTGGATTAGAAC
CAAAGATATTTTTGTGTAAAGGCTCTAGAGTGATGCTTACTAGAAACCTA
TGGACTGAGAAAGGGCTTTGCAATGGATCAATGGGTTATGTGAAAGATAT
AATTTATCAGGAAGGAGATTCAACTCCGAATTTACCAATAGCTGTTGTTG
TTCAGTTTGATGATTTCTATACAGGACCAAGTATTTGTGAAGACCAGCCT
CGCTGTGTTCCCATTATACCTTTAACTAATGCTTCAGATTTACATGGTTC
TTCTCATGAGAGACAGCAGTTACCTTTGAGATTGTCTTGGGCAATTACTA
TTCATAAATCGCAAGGACTCACCATTAATAAAGCATGGATTGATTTAGGA
AATACTGAGAAATTTATTGGGTTAGCATATGTAGCAGTATCAAGGGTAAG
AGAGCTAAAAGATATGATAATTGAGTCAATGACACTAGAACGTTTAAGAG
ATGTAAAGAATAGAAAAGACTTTGAATATAGAAAAGCTGAAGAAGAAAAG
ATAACCGACTTAGCAAGATGTTTAAATGAAGGTGTATGAAGTTCAATAAT
AACCATTGAATAAGCCTTGAAAGGTAACCCTGtcataaaattacaaaatg
taaaTATAGAATAATTTGTactattattttctttttctttttataattta
gGAAATTTATCTCAATTCAAACACAATTCAACAAAGTAACTAAAGCCAAA
AACAAAGGTAagtttaaaattcttttttaatgtttcaatAGTTCTCGAAC
CACTTTTATTTTATACTGAAATTGTATAGGATAATATAATGTCGTCTTTC
TACGAAAATTACAAATAATCAATTTCGAGGGATTATACTATAGTTCTATA
GTTTTAGAGTGTTTAAAGCTCAAAATAAAATCTCTCTTAGGCATATACTA
TTAATACGGTAACCCAAttttaaataagtttttttttctcattcagGTTA
TTTTCACAACATTCAAATCGATCTGAAACAGTAATGTATCCATGCAATAT
CAAACCATATTTCAAAAACGTTTGGTTGATTTTAAATCCTGTAATTAATG
TTGTCCATAATATGATCAAATTGTAAAGGATATGTACTTTTAGAAGTAAA
TTAACGTTCGTTATTGGCACCTTGCTTCTGATTAAACCTTTCATTGAATA
TAGTATTGCAGTCACGTATGAAATTTATTAACCCCCGTTGCAGCCCGTTG
TCATGTTTTCCTATTAATGTTCTGGATCCTGTGTCACCTACGCATGTTAT
TGAAATAGAGTTTAACAACGATATGCATTTGCTGATGACCAAGATATATT
TTCTCAATCTTCCAGTTAAAAATTGTGGCTGAATAAAGTATATACATTCT
GGCTTAAACATGGATATTATTGTATTCCCTGGTTAACatcaaaaatactt
acaaattGCTGCTGTTCataaatttttgttatttgCTGTTATCATTATAT
GACGTTGGTTTTTGATTGCAAATGGAAGTTGAATTGTGTTAATAGACAAT
TTTTACTAGTATTTTTGAATCAATTGCAATTTTCATTTGTTGAATTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022075XLOC_022075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037280-exon-sc0001607-1491911889:29989..31318TCONS_00037280-exon-sc0001607-1491911889:29989..31318Clytia hemisphaericaexon
TCONS_00037280-exon-sc0001607-1510915933:29989..31318TCONS_00037280-exon-sc0001607-1510915933:29989..31318Clytia hemisphaericaexon
TCONS_00037280-exon-sc0001607-1575043694:29989..31318TCONS_00037280-exon-sc0001607-1575043694:29989..31318Clytia hemisphaericaexon
TCONS_00037280-exon-sc0001607-1491911889:34190..34245TCONS_00037280-exon-sc0001607-1491911889:34190..34245Clytia hemisphaericaexon
TCONS_00037280-exon-sc0001607-1510915933:34190..34245TCONS_00037280-exon-sc0001607-1510915933:34190..34245Clytia hemisphaericaexon
TCONS_00037280-exon-sc0001607-1575043694:34190..34245TCONS_00037280-exon-sc0001607-1575043694:34190..34245Clytia hemisphaericaexon
TCONS_00037280-exon-sc0001607-1491911889:34485..35087TCONS_00037280-exon-sc0001607-1491911889:34485..35087Clytia hemisphaericaexon
TCONS_00037280-exon-sc0001607-1510915933:34485..35087TCONS_00037280-exon-sc0001607-1510915933:34485..35087Clytia hemisphaericaexon
TCONS_00037280-exon-sc0001607-1575043694:34485..35087TCONS_00037280-exon-sc0001607-1575043694:34485..35087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001607supercontigsc0001607:29989..35087 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.131067	0.112485	0.407896	0.293131	0	0	0	0	0	0	0.0619446	0	0	0	0	0	0.125664	0	0	0	0	0	0	0.108508	0	0.109304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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