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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037279 ID=TCONS_00037279|Name=TCONS_00037279|organism=Clytia hemisphaerica|type=transcript|length=1833bp
TGTTCAGAAAATTGCAAATGTTTTGCCAAGATATCCCAGAGATATACCTG
TTAtagtttttaaatttgatggGAAGGATAATAAATCTAAAGAGCTCAGA
GTACGTAGACAAAAGGTTGTTGATGCTTTAAAGTGGCTAACCGGTAAAAA
TGAGAAGGGTGAACCAAACAACATCAGATACCAAGATGTCACTATTGATG
AAAATAGATTTGATAGTTTACCTGAAGATGATTTTCTTAAAATGCCTATG
aatgcaaattttgaaaattatgaaaaagatatttttaatgatGATGACTG
TTGTAGTGATGACGAGGTTCTTCCTGATATGGGTCCTATTCCTgaggaaa
atgatgaaaaagttTATGACTGTAATACTGAAATGGGAAGTTTTAGTTTT
ATTCCAACTAAGATTAAGTCCAAAATGGAGAAACATATTTTAAATGATTC
AGTTCTTAAACCGGAAGCAATTGATGTTGGAAAAGAACCATTAAATGAGT
TCACCACTGAGTATTTAGCTACATTAACATTTCCAACACTATTTCCTGAT
GGGAAAGGAGACCCCACTAGATTTAGCACGAAACGGTCTATAGCAAAAAG
TGATACAGAATCTTTCTCAGCAAAAATTAAACATTTGATTAAATTTGGTG
AGTTTATTGATGGTACAGATTTGCGGCCCATTCTCGTTTTGGATTTTGGG
CCTATAATATGCTATATTGCAGACGACTTTTAGGACAAGGAAGCTTTTAC
TTGAAGCAAAATCCAGGAGAACCTAACTTGACTATTGATGAGTTACAAGA
AATGATTAGAGCTGGTACTTATAGTAGtgttatgaaaaaacttttgagat
aTGCTAAGAACATTACAGGAACAAATGCTTATTGGAGTCAAGCTAAAGAG
CAGTTAAAAGCTACAATAAACCAAGTTGGCTCACCAAcaattttttggac
tttgtcttGTGCAGAGTTTCACTGGCCAGAGTATCATGCCTTATTTTCTA
CTGATGAGAAGGCTGATTCAAGCACTTTACGTGAGAATATAATTAACAAT
CCACATTTGATCGATTGGTTCTTTACAGTCagagttgaaaattttgttaa
gCATTGGCTTTATGAGACTCTTGAGGCTGAATGGCATTGGTACAGATTTG
AATACGCTGTTATGCGTGGTTCAATTCATTGCCATGGTGTCGCCAAGCTT
AAAAATGATCCAGGACTATGTAAACTTACACAAAAAGCCTTAGAAGGTCA
TCTAGCTGAGAAAAAATTGTCTGAAACTGAtgatgatattgaaaataata
gAGTACAATTACAGGTTATTGTTAATGAAGGTAAAGCTGCAGCACAGCAA
GTTTGTGACTATGTTGATACTTTGGTAACTGCTTGTAATCCATGCACACC
TGAGGAACAGCTGGGTAAAACCAAAAGTTCATCCTTGTAAGAGAAAGCTT
GAAGACTaaaatgatgatgattttgataATGATTATGCTGATTTAGTTAA
TTGTGTTCAGAGACATACTAAATGTAGCTCAGCTTACTGTTTACGTAAGA
ATGACGGTGAACAATATTGCCGGTTTAAATTTCCGTTTGAAGACTGTGAT
AAAACTTATCTTGAATTTGAAGAAGTAACTTCTAAGAAATACGGTAAGCA
ATTTAGACCCAAGATTGTCTTGAAGAGAAATGATTCCAGAGTTAATAGAC
ATCAGCGGCTGCAATTGCAATCATGGAGAGGTAATTGTGATATACAGCCA
ATTATAGATTATAATGCATGtttagaatatctcgcaaagtATGCTTCAAA
AGCTGAAAAGATTTCTAATGTTGCTAGAGATGC Run BLAST on NCBI transcript from alignment at sc0001607:29989..31821+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037279 ID=TCONS_00037279|Name=TCONS_00037279|organism=Clytia hemisphaerica|type=transcript|length=1833bp|location=Sequence derived from alignment at sc0001607:29989..31821+ (Clytia hemisphaerica)
TGTTCAGAAAATTGCAAATGTTTTGCCAAGATATCCCAGAGATATACCTG
TTAtagtttttaaatttgatggGAAGGATAATAAATCTAAAGAGCTCAGA
GTACGTAGACAAAAGGTTGTTGATGCTTTAAAGTGGCTAACCGGTAAAAA
TGAGAAGGGTGAACCAAACAACATCAGATACCAAGATGTCACTATTGATG
AAAATAGATTTGATAGTTTACCTGAAGATGATTTTCTTAAAATGCCTATG
aatgcaaattttgaaaattatgaaaaagatatttttaatgatGATGACTG
TTGTAGTGATGACGAGGTTCTTCCTGATATGGGTCCTATTCCTgaggaaa
atgatgaaaaagttTATGACTGTAATACTGAAATGGGAAGTTTTAGTTTT
ATTCCAACTAAGATTAAGTCCAAAATGGAGAAACATATTTTAAATGATTC
AGTTCTTAAACCGGAAGCAATTGATGTTGGAAAAGAACCATTAAATGAGT
TCACCACTGAGTATTTAGCTACATTAACATTTCCAACACTATTTCCTGAT
GGGAAAGGAGACCCCACTAGATTTAGCACGAAACGGTCTATAGCAAAAAG
TGATACAGAATCTTTCTCAGCAAAAATTAAACATTTGATTAAATTTGGTG
AGTTTATTGATGGTACAGATTTGCGGCCCATTCTCGTTTTGGATTTTGGG
CCTATAATATGCTATATTGCAGACGACTTTTAGGACAAGGAAGCTTTTAC
TTGAAGCAAAATCCAGGAGAACCTAACTTGACTATTGATGAGTTACAAGA
AATGATTAGAGCTGGTACTTATAGTAGtgttatgaaaaaacttttgagat
aTGCTAAGAACATTACAGGAACAAATGCTTATTGGAGTCAAGCTAAAGAG
CAGTTAAAAGCTACAATAAACCAAGTTGGCTCACCAAcaattttttggac
tttgtcttGTGCAGAGTTTCACTGGCCAGAGTATCATGCCTTATTTTCTA
CTGATGAGAAGGCTGATTCAAGCACTTTACGTGAGAATATAATTAACAAT
CCACATTTGATCGATTGGTTCTTTACAGTCagagttgaaaattttgttaa
gCATTGGCTTTATGAGACTCTTGAGGCTGAATGGCATTGGTACAGATTTG
AATACGCTGTTATGCGTGGTTCAATTCATTGCCATGGTGTCGCCAAGCTT
AAAAATGATCCAGGACTATGTAAACTTACACAAAAAGCCTTAGAAGGTCA
TCTAGCTGAGAAAAAATTGTCTGAAACTGAtgatgatattgaaaataata
gAGTACAATTACAGGTTATTGTTAATGAAGGTAAAGCTGCAGCACAGCAA
GTTTGTGACTATGTTGATACTTTGGTAACTGCTTGTAATCCATGCACACC
TGAGGAACAGCTGGGTAAAACCAAAAGTTCATCCTTGTAAGAGAAAGCTT
GAAGACTaaaatgatgatgattttgataATGATTATGCTGATTTAGTTAA
TTGTGTTCAGAGACATACTAAATGTAGCTCAGCTTACTGTTTACGTAAGA
ATGACGGTGAACAATATTGCCGGTTTAAATTTCCGTTTGAAGACTGTGAT
AAAACTTATCTTGAATTTGAAGAAGTAACTTCTAAGAAATACGGTAAGCA
ATTTAGACCCAAGATTGTCTTGAAGAGAAATGATTCCAGAGTTAATAGAC
ATCAGCGGCTGCAATTGCAATCATGGAGAGGTAATTGTGATATACAGCCA
ATTATAGATTATAATGCATGtttagaatatctcgcaaagtATGCTTCAAA
AGCTGAAAAGATTTCTAATGTTGCTAGAGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037279-exon-sc0001607-1491911889:29989..31821 | TCONS_00037279-exon-sc0001607-1491911889:29989..31821 | Clytia hemisphaerica | exon |
| TCONS_00037279-exon-sc0001607-1510915933:29989..31821 | TCONS_00037279-exon-sc0001607-1510915933:29989..31821 | Clytia hemisphaerica | exon |
| TCONS_00037279-exon-sc0001607-1575043694:29989..31821 | TCONS_00037279-exon-sc0001607-1575043694:29989..31821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001607 | supercontig | sc0001607:29989..31821 + |
Blast
The following BLAST results are available for this feature:
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