TCONS_00037248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037248
Unique NameTCONS_00037248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037248 ID=TCONS_00037248|Name=TCONS_00037248|organism=Clytia hemisphaerica|type=transcript|length=1251bp
TGCAGCTTGGTTAGAGGAAATCTCAGGCGTAAGACCAAGAGCAGACTAGC
CATCACCAGAAATTCCTTACTTACAGCCTACAGatgCCTCTTGCAAAAAA
CTTTGCGCGGAATGTTCAAAGAAAGATCTGACGATAACAAACTTGAAGAA
AGAAGTAACAGCATtgAAGCAGAAATTAAATCGGAATTTCAACTCATTCC
AAAAGGAACTGTCTAAAGAAAAACGTCTATTGCGAAAACCGTTCTTCCGC
ATCCCTGGAAATAACAAAATGGAGCTCGTCAAAGGAAGCGGGATCTTCCT
GAAGAAGGACACCATTTGTCAGGCGCACCTTCTTCCAGAGTTTGGAAAAT
GTTTTCCTTACCTACTTAAAAGATTGTTTTCCCAACGTGAGCTGGTTACC
CTGAACCACACAGGGGTAAATGGGATGGATGAATTTCCCAAAGATTTGTT
GAATGTCATTCAAATCTTTTGTAAAGCAAACACATACGACGTAGTCAGTC
GCTACGATAAAACAAGGACTGAAATCGACAAAAGCCGCATTAATGAAATG
TGCACAAATGTTGTTCAGTCTGCCCGCCACTATTTGAAATTCGGCAAAAA
GTGGCTAATCCaatctgaagaagaagaagaagaagagaaaaatgaaCCGC
ACAATGCCACACTTTAACGTTTTGCTGTTaattaattttggcggtaaCTT
ATTTTGGAAAACTTGAACttctacttttttttctttctcagcAATAAAGA
CAATGTTAGATAGcaagaaataaaatttattttttgagcgtccaaacaaa
aaaaaatcaaaaaaaatagttttaagtAGTAATGCGAAAAGTATTGTCTC
GAGGACCTATACACTACACCTTCCCCGCAATACAAATTCAGCGAGTGACA
AAGTTTTCCTCAACTAATTTTTAACGAACCGTCTAGTCTAtagtttgttt
taattttgaaagtaactgtatgtacatgtttttttttataagcaagtgta
tgccccttgatCAGGCTCGTgcatgcttaagttctcaaagcatccaggca
tagattatgcttattatatgcttatgaatcatgcttataattcaccccga
gccaagttttagttaaattttagaaattttgtaaaaatttgttcagattt
gggagcagtggtagctgtggaatgtcttttttttacttgacctcaaccaa
accattttaaactgataaaaaatgataatttgaaaaatatttcagactga
c
Run BLAST on NCBI

protein sequence of TCONS_00037248-protein

>TCONS_00037248-protein ID=TCONS_00037248-protein|Name=TCONS_00037248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MELVKGSGIFLKKDTICQAHLLPEFGKCFPYLLKRLFSQRELVTLNHTGV
NGMDEFPKDLLNVIQIFCKANTYDVVSRYDKTRTEIDKSRINEMCTNVVQ
SARHYLKFGKKWLIQSEEEEEEEKNEPHNATL
Run BLAST on NCBI

transcript from alignment at sc0001595:46666..50270+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037248 ID=TCONS_00037248|Name=TCONS_00037248|organism=Clytia hemisphaerica|type=transcript|length=3605bp|location=Sequence derived from alignment at sc0001595:46666..50270+ (Clytia hemisphaerica)
TGCAGCTTGGTTAGAGGGTATATTCTAttgattttatgtttttgtttgtt
aacattctattgtttaaaacaGTGTAATTTCTTTTGAGACACTCAAGTGA
TTATTTACAAACATAAACTCATCTGAATCTCTCTATTCAATGACTGTGGT
TTATACTGTTCTAGTAGGTACTAGAATTTAACAGTGTTCAAAATTCTTCC
ATCTCAGACAGATTTTCTCTCAGAGGTTTTGAAAGATGCATTTCCGCGAT
CTCAAAAACAGAAGAATCTGGCTTAGAGTTGCGTGTAAAGCCTAATTTTT
CTCTGAGAATCTCTGCTTTGAGcactaatttcaaaataatgattttaatA
TGTTATTATTTAGAAATCTCAGGCGTAAGACCAAGAGCAGACTAGCCATC
ACCAGAAATTCCTTACTTACAGCCTACAGGTACTGCATTGAACTTTCTAT
CTTGCTTAATTGTTTAGAGTTGcactgcgaaaattagttcccttaaggta
atttgAAACCATATCAACCAGACATGTTATCggatattttgttttaaatg
aaatGGCTTCTAGCTcttcattttgtatttttagatgCCTCTTGCAAAAA
ACTTTGCGCGGAATGTTCAAAGAAAGATCTGACGATAACAAACTTGAAGA
AAGAAGTAACAGCATGTATGTTTCATATTCCAACCCTACCACTATTTACA
GCAGCGgtccaatttaaaaaaataaattgtatTTAACTAAAATATGATAC
AGATTTTGACCCAAAGTTGTTATCCCCCTCTCTTTACTTGATCCCTCCAA
AAAACCCCCTTTTTCTTCNTTTGACCCAAAGTTGTTATCCCCCTCTCTTT
ACTTGATCCCTCCAAAAACCCCCctttttcttcagaaaatctTAGGGGAT
AGGGGATAGATAGGGGATAAGGATCCCTATAAAGACTTTTCAGAAAAGTT
TGACTCCCTGTTAAAAAGGGGGCTCAGACTATGCAGGGTATCAGTAAACA
AACCTTGTTAAAgcctaattttaataaatttctttttagtgAAGCAGAAA
TTAAATCGGAATTTCAACTCATTCCAAAAGGTAATACTATTGGGTACCTA
ATAAATAAACTTTGCAGCTACGAGTCTTATTACACCCACGAAATTTCTAC
TAGAAAAGCTTTACCACTCACTCTTATTCTACCCCTTGCTTGTGCTTAAT
CGTAGGGGAATTAAGCCCAGAAGATTAAGTATTATGCAGGATCAAGAACT
GTGCTACAACTTTGCACTCAGATTATAagtctcttttttatttttttttg
ttgccTGTTTAGGAACTGTCTAAAGAAAAACGTCTATTGCGAAAACCGTT
CTTCCGCATCCCTGGAAATAACAAAGTGAGtttattcttaaaatatttat
GATTGACCAATAATTGgcctcttccagaaaaaaaaattgtttatggGGGT
AGAGGATTATaacaattttcctttgtttttagacCCCTAGGACAACGGGT
TTCACCCCCCCCCAAACAAGCATCACCTGACCCTCAGACCCAAAATTACC
CCTGGGCAGAGCAAATCTACACCCCAAACAATTCAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTTTCAGATGGAGCTCGTCAAAGGAAGCGGGATCTTCCT
GAAGAAGGACACCATTTGTCAGGCGCACCTTCTTCCAGAGTTTGGAAAAT
GTTTTCCTTACCTACTTAAAAGGTTGGGTTTCtttattctatttttatgt
ttttgaagGGGTGAgaaatttctaataaaaaatctgCTTGTTATCCGCTA
AGATTTACCTTGATAAAATGTGCTTTATTTCCTTCTAGATTGTTTTCCCA
ACGTGAGCTGGTTACCCTGAACCACACAGGGGTAAATGGGATGGATGAAT
TTCCCAAAGATTTGTTGAATGTCATTCAAAGTGAGTTTTAAATTTGTTAT
TTCATATGAACCATCAGTTTCTCTGTTCCTAAAAAGATTTTAGTGATGCA
TCTGAACTAACCATGGAATTCAGTAGAAAAATTAGCCTATGGCTCACAAA
TTCTTTTGGATGGATTATTACAATGATATtgtgaaatttaaaaatcttaa
cAAGCACCTGTTATCAATGGTTTCTAAAAACATGGATACTCAAATCTGAC
TAACAaataaatttgagatttttttgattATGCTATACAATAaggttttg
attattttatgttttcagTCTTTTGTAAAGCAAACACATACGACGTAGTC
AGTCGCTACGATAAAACAAGGACTGAAATCGACAAAAGCCGCATTAATGA
AATGTGCACAAATGTTGTTCAGTCTGCCCGCCACTATTTGAAATTCGGCA
AAAAGTGGCTAATCCaatctgaagaagaagaagaagaagagaaaaatgaa
CCGCACAATGCCACACTTTAACGTTTTGCTGTTaattaattttggcggta
aCTTATTTTGGAAAACTTGAACttctacttttttttctttctcagcAATA
AAGACAATGTTAGATAGcaagaaataaaatttattttttgagcgtccaaa
caaaaaaaaatcaaaaaaaatagttttaagtAGTAATGCGAAAAGTATTG
TCTCGAGGACCTATACACTACACCTTCCCCGCAATACAAATTCAGCGAGT
GACAAAGTTTTCCTCAACTAATTTTTAACGAACCGTCTAGTCTAtagttt
gttttaattttgaaagtaactgtatgtacatgtttttttttataagcaag
tgtatgccccttgatCAGGCTCGTgcatgcttaagttctcaaagcatcca
ggcatagattatgcttattatatgcttatgaatcatgcttataattcacc
ccgagccaagttttagttaaattttagaaattttgtaaaaatttgttcag
atttgggagcagtggtagctgtggaatgtcttttttttacttgacctcaa
ccaaaccattttaaactgataaaaaatgataatttgaaaaatatttcaga
ctgac

Coding sequence (CDS) from alignment at sc0001595:46666..50270+

>TCONS_00037248 ID=TCONS_00037248|Name=TCONS_00037248|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at sc0001595:46666..50270+ (Clytia hemisphaerica)
ATGGAGCTCGTCAAAGGAAGCGGGATCTTCCTGAAGAAGGACACCATTTG
TCAGGCGCACCTTCTTCCAGAGTTTGGAAAATGTTTTCCTTACCTACTTA
AAAGATTGTTTTCCCAACGTGAGCTGGTTACCCTGAACCACACAGGGGTA
AATGGGATGGATGAATTTCCCAAAGATTTGTTGAATGTCATTCAAATCTT
TTGTAAAGCAAACACATACGACGTAGTCAGTCGCTACGATAAAACAAGGA
CTGAAATCGACAAAAGCCGCATTAATGAAATGTGCACAAATGTTGTTCAG
TCTGCCCGCCACTATTTGAAATTCGGCAAAAAGTGGCTAATCCaatctga
agaagaagaagaagaagagaaaaatgaaCCGCACAATGCCACACTTTAAA
TGGAGCTCGTCAAAGGAAGCGGGATCTTCCTGAAGAAGGACACCATTTGT
CAGGCGCACCTTCTTCCAGAGTTTGGAAAATGTTTTCCTTACCTACTTAA
AAGATTGTTTTCCCAACGTGAGCTGGTTACCCTGAACCACACAGGGGTAA
ATGGGATGGATGAATTTCCCAAAGATTTGTTGAATGTCATTCAAATCTTT
TGTAAAGCAAACACATACGACGTAGTCAGTCGCTACGATAAAACAAGGAC
TGAAATCGACAAAAGCCGCATTAATGAAATGTGCACAAATGTTGTTCAGT
CTGCCCGCCACTATTTGAAATTCGGCAAAAAGTGGCTAATCCaatctgaa
gaagaagaagaagaagagaaaaatgaaCCGCACAATGCCACACTTTAAAT
GGAGCTCGTCAAAGGAAGCGGGATCTTCCTGAAGAAGGACACCATTTGTC
AGGCGCACCTTCTTCCAGAGTTTGGAAAATGTTTTCCTTACCTACTTAAA
AGATTGTTTTCCCAACGTGAGCTGGTTACCCTGAACCACACAGGGGTAAA
TGGGATGGATGAATTTCCCAAAGATTTGTTGAATGTCATTCAAATCTTTT
GTAAAGCAAACACATACGACGTAGTCAGTCGCTACGATAAAACAAGGACT
GAAATCGACAAAAGCCGCATTAATGAAATGTGCACAAATGTTGTTCAGTC
TGCCCGCCACTATTTGAAATTCGGCAAAAAGTGGCTAATCCaatctgaag
aagaagaagaagaagagaaaaatgaaCCGCACAATGCCACACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022045XLOC_022045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037248-exon-sc0001595-1491911889:46666..46682TCONS_00037248-exon-sc0001595-1491911889:46666..46682Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1510915933:46666..46682TCONS_00037248-exon-sc0001595-1510915933:46666..46682Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1575043694:46666..46682TCONS_00037248-exon-sc0001595-1575043694:46666..46682Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1491911889:47029..47094TCONS_00037248-exon-sc0001595-1491911889:47029..47094Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1510915933:47029..47094TCONS_00037248-exon-sc0001595-1510915933:47029..47094Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1575043694:47029..47094TCONS_00037248-exon-sc0001595-1575043694:47029..47094Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1491911889:47250..47330TCONS_00037248-exon-sc0001595-1491911889:47250..47330Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1510915933:47250..47330TCONS_00037248-exon-sc0001595-1510915933:47250..47330Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1575043694:47250..47330TCONS_00037248-exon-sc0001595-1575043694:47250..47330Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1491911889:47705..47745TCONS_00037248-exon-sc0001595-1491911889:47705..47745Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1510915933:47705..47745TCONS_00037248-exon-sc0001595-1510915933:47705..47745Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1575043694:47705..47745TCONS_00037248-exon-sc0001595-1575043694:47705..47745Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1491911889:47978..48040TCONS_00037248-exon-sc0001595-1491911889:47978..48040Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1510915933:47978..48040TCONS_00037248-exon-sc0001595-1510915933:47978..48040Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1575043694:47978..48040TCONS_00037248-exon-sc0001595-1575043694:47978..48040Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1491911889:48884..48987TCONS_00037248-exon-sc0001595-1491911889:48884..48987Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1510915933:48884..48987TCONS_00037248-exon-sc0001595-1510915933:48884..48987Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1575043694:48884..48987TCONS_00037248-exon-sc0001595-1575043694:48884..48987Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1491911889:49104..49195TCONS_00037248-exon-sc0001595-1491911889:49104..49195Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1510915933:49104..49195TCONS_00037248-exon-sc0001595-1510915933:49104..49195Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1575043694:49104..49195TCONS_00037248-exon-sc0001595-1575043694:49104..49195Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1491911889:49484..50270TCONS_00037248-exon-sc0001595-1491911889:49484..50270Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1510915933:49484..50270TCONS_00037248-exon-sc0001595-1510915933:49484..50270Clytia hemisphaericaexon
TCONS_00037248-exon-sc0001595-1575043694:49484..50270TCONS_00037248-exon-sc0001595-1575043694:49484..50270Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037248-proteinTCONS_00037248-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001595supercontigsc0001595:46666..50270 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.274493	0.214164	0.692385	0.159477	0.162633	0.248451	0.11442	0.0733288	0	5.55339e-10	3.73256e-05	2.61022	0.873923	2.18652	1.37935	1.1608	3.22291	1.69869	1.84127	2.9584	3.43847	0.01363	1.537	1.37192	0	0.00797553	0	1.55106	6.24865e-05	3.6665
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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