TCONS_00037247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037247
Unique NameTCONS_00037247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037247 ID=TCONS_00037247|Name=TCONS_00037247|organism=Clytia hemisphaerica|type=transcript|length=1275bp
aCTTTTGAATTCCAGCACAATGAATGCAGCTTGGTTAGAGGAAATCTCAG
GCGTAAGACCAAGAGCAGACTAGCCATCACCAGAAATTCCTTACTTACAG
CCTACAGatgCCTCTTGCAAAAAACTTTGCGCGGAATGTTCAAAGAAAGA
TCTGACGATAACAAACTTGAAGAAAGAAGTAACAGCATtgAAGCAGAAAT
TAAATCGGAATTTCAACTCATTCCAAAAGGAACTGTCTAAAGAAAAACGT
CTATTGCGAAAACCGTTCTTCCGCATCCCTGGAAATAACAAAATGGAGCT
CGTCAAAGGAAGCGGGATCTTCCTGAAGAAGGACACCATTTGTCAGGCGC
ACCTTCTTCCAGAGTTTGGAAAATGTTTTCCTTACCTACTTAAAAGATTG
TTTTCCCAACGTGAGCTGGTTACCCTGAACCACACAGGGGTAAATGGGAT
GGATGAATTTCCCAAAGATTTGTTGAATGTCATTCAAATCTTTTGTAAAG
CAAACACATACGACGTAGTCAGTCGCTACGATAAAACAAGGACTGAAATC
GACAAAAGCCGCATTAATGAAATGTGCACAAATGTTGTTCAGTCTGCCCG
CCACTATTTGAAATTCGGCAAAAAGTGGCTAATCCaatctgaagaagaag
aagaagaagagaaaaatgaaCCGCACAATGCCACACTTTAACGTTTTGCT
GTTaattaattttggcggtaaCTTATTTTGGAAAACTTGAACttctactt
ttttttctttctcagcAATAAAGACAATGTTAGATAGcaagaaataaaat
ttattttttgagcgtccaaacaaaaaaaaatcaaaaaaaatagttttaag
tAGTAATGCGAAAAGTATTGTCTCGAGGACCTATACACTACACCTTCCCC
GCAATACAAATTCAGCGAGTGACAAAGTTTTCCTCAACTAATTTTTAACG
AACCGTCTAGTCTAtagtttgttttaattttgaaagtaactgtatgtaca
tgtttttttttataagcaagtgtatgccccttgatCAGGCTCGTgcatgc
ttaagttctcaaagcatccaggcatagattatgcttattatatgcttatg
aatcatgcttataattcaccccgagccaagttttagttaaattttagaaa
ttttgtaaaaatttgttcagatttgggagcagtggtagctgtggaatgtc
ttttttttacttgacctcaaccaaaccattttaaactgataaaaaatgat
aatttgaaaaatatttcagactgac
Run BLAST on NCBI

transcript from alignment at sc0001595:46492..50270+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037247 ID=TCONS_00037247|Name=TCONS_00037247|organism=Clytia hemisphaerica|type=transcript|length=3779bp|location=Sequence derived from alignment at sc0001595:46492..50270+ (Clytia hemisphaerica)
aCTTTTGAATTCCAGCACAATGAATGCAGCTTGGTTAGAGGGTATATTCT
ATtgatttatgtttttgtttattaACATTNTTTGTAAATGTAAGGTGATG
ATTAGAGACCTTACTTGAGTAcacttctcttttttttttttttgttcagg
aCTTTTGAATTCCAGCACAGTGAATGCAGCTTGGTTAGAGGGTATATTCT
AttgattttatgtttttgtttgttaacattctattgtttaaaacaGTGTA
ATTTCTTTTGAGACACTCAAGTGATTATTTACAAACATAAACTCATCTGA
ATCTCTCTATTCAATGACTGTGGTTTATACTGTTCTAGTAGGTACTAGAA
TTTAACAGTGTTCAAAATTCTTCCATCTCAGACAGATTTTCTCTCAGAGG
TTTTGAAAGATGCATTTCCGCGATCTCAAAAACAGAAGAATCTGGCTTAG
AGTTGCGTGTAAAGCCTAATTTTTCTCTGAGAATCTCTGCTTTGAGcact
aatttcaaaataatgattttaatATGTTATTATTTAGAAATCTCAGGCGT
AAGACCAAGAGCAGACTAGCCATCACCAGAAATTCCTTACTTACAGCCTA
CAGGTACTGCATTGAACTTTCTATCTTGCTTAATTGTTTAGAGTTGcact
gcgaaaattagttcccttaaggtaatttgAAACCATATCAACCAGACATG
TTATCggatattttgttttaaatgaaatGGCTTCTAGCTcttcattttgt
atttttagatgCCTCTTGCAAAAAACTTTGCGCGGAATGTTCAAAGAAAG
ATCTGACGATAACAAACTTGAAGAAAGAAGTAACAGCATGTATGTTTCAT
ATTCCAACCCTACCACTATTTACAGCAGCGgtccaatttaaaaaaataaa
ttgtatTTAACTAAAATATGATACAGATTTTGACCCAAAGTTGTTATCCC
CCTCTCTTTACTTGATCCCTCCAAAAAACCCCCTTTTTCTTCNTTTGACC
CAAAGTTGTTATCCCCCTCTCTTTACTTGATCCCTCCAAAAACCCCCctt
tttcttcagaaaatctTAGGGGATAGGGGATAGATAGGGGATAAGGATCC
CTATAAAGACTTTTCAGAAAAGTTTGACTCCCTGTTAAAAAGGGGGCTCA
GACTATGCAGGGTATCAGTAAACAAACCTTGTTAAAgcctaattttaata
aatttctttttagtgAAGCAGAAATTAAATCGGAATTTCAACTCATTCCA
AAAGGTAATACTATTGGGTACCTAATAAATAAACTTTGCAGCTACGAGTC
TTATTACACCCACGAAATTTCTACTAGAAAAGCTTTACCACTCACTCTTA
TTCTACCCCTTGCTTGTGCTTAATCGTAGGGGAATTAAGCCCAGAAGATT
AAGTATTATGCAGGATCAAGAACTGTGCTACAACTTTGCACTCAGATTAT
AagtctcttttttatttttttttgttgccTGTTTAGGAACTGTCTAAAGA
AAAACGTCTATTGCGAAAACCGTTCTTCCGCATCCCTGGAAATAACAAAG
TGAGtttattcttaaaatatttatGATTGACCAATAATTGgcctcttcca
gaaaaaaaaattgtttatggGGGTAGAGGATTATaacaattttcctttgt
ttttagacCCCTAGGACAACGGGTTTCACCCCCCCCCAAACAAGCATCAC
CTGACCCTCAGACCCAAAATTACCCCTGGGCAGAGCAAATCTACACCCCA
AACAATTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCAGATGGAGCT
CGTCAAAGGAAGCGGGATCTTCCTGAAGAAGGACACCATTTGTCAGGCGC
ACCTTCTTCCAGAGTTTGGAAAATGTTTTCCTTACCTACTTAAAAGGTTG
GGTTTCtttattctatttttatgtttttgaagGGGTGAgaaatttctaat
aaaaaatctgCTTGTTATCCGCTAAGATTTACCTTGATAAAATGTGCTTT
ATTTCCTTCTAGATTGTTTTCCCAACGTGAGCTGGTTACCCTGAACCACA
CAGGGGTAAATGGGATGGATGAATTTCCCAAAGATTTGTTGAATGTCATT
CAAAGTGAGTTTTAAATTTGTTATTTCATATGAACCATCAGTTTCTCTGT
TCCTAAAAAGATTTTAGTGATGCATCTGAACTAACCATGGAATTCAGTAG
AAAAATTAGCCTATGGCTCACAAATTCTTTTGGATGGATTATTACAATGA
TATtgtgaaatttaaaaatcttaacAAGCACCTGTTATCAATGGTTTCTA
AAAACATGGATACTCAAATCTGACTAACAaataaatttgagatttttttg
attATGCTATACAATAaggttttgattattttatgttttcagTCTTTTGT
AAAGCAAACACATACGACGTAGTCAGTCGCTACGATAAAACAAGGACTGA
AATCGACAAAAGCCGCATTAATGAAATGTGCACAAATGTTGTTCAGTCTG
CCCGCCACTATTTGAAATTCGGCAAAAAGTGGCTAATCCaatctgaagaa
gaagaagaagaagagaaaaatgaaCCGCACAATGCCACACTTTAACGTTT
TGCTGTTaattaattttggcggtaaCTTATTTTGGAAAACTTGAACttct
acttttttttctttctcagcAATAAAGACAATGTTAGATAGcaagaaata
aaatttattttttgagcgtccaaacaaaaaaaaatcaaaaaaaatagttt
taagtAGTAATGCGAAAAGTATTGTCTCGAGGACCTATACACTACACCTT
CCCCGCAATACAAATTCAGCGAGTGACAAAGTTTTCCTCAACTAATTTTT
AACGAACCGTCTAGTCTAtagtttgttttaattttgaaagtaactgtatg
tacatgtttttttttataagcaagtgtatgccccttgatCAGGCTCGTgc
atgcttaagttctcaaagcatccaggcatagattatgcttattatatgct
tatgaatcatgcttataattcaccccgagccaagttttagttaaatttta
gaaattttgtaaaaatttgttcagatttgggagcagtggtagctgtggaa
tgtcttttttttacttgacctcaaccaaaccattttaaactgataaaaaa
tgataatttgaaaaatatttcagactgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022045XLOC_022045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037247-exon-sc0001595-1491911889:46492..46532TCONS_00037247-exon-sc0001595-1491911889:46492..46532Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1510915933:46492..46532TCONS_00037247-exon-sc0001595-1510915933:46492..46532Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1575043694:46492..46532TCONS_00037247-exon-sc0001595-1575043694:46492..46532Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1491911889:47029..47094TCONS_00037247-exon-sc0001595-1491911889:47029..47094Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1510915933:47029..47094TCONS_00037247-exon-sc0001595-1510915933:47029..47094Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1575043694:47029..47094TCONS_00037247-exon-sc0001595-1575043694:47029..47094Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1491911889:47250..47330TCONS_00037247-exon-sc0001595-1491911889:47250..47330Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1510915933:47250..47330TCONS_00037247-exon-sc0001595-1510915933:47250..47330Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1575043694:47250..47330TCONS_00037247-exon-sc0001595-1575043694:47250..47330Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1491911889:47705..47745TCONS_00037247-exon-sc0001595-1491911889:47705..47745Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1510915933:47705..47745TCONS_00037247-exon-sc0001595-1510915933:47705..47745Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1575043694:47705..47745TCONS_00037247-exon-sc0001595-1575043694:47705..47745Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1491911889:47978..48040TCONS_00037247-exon-sc0001595-1491911889:47978..48040Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1510915933:47978..48040TCONS_00037247-exon-sc0001595-1510915933:47978..48040Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1575043694:47978..48040TCONS_00037247-exon-sc0001595-1575043694:47978..48040Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1491911889:48884..48987TCONS_00037247-exon-sc0001595-1491911889:48884..48987Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1510915933:48884..48987TCONS_00037247-exon-sc0001595-1510915933:48884..48987Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1575043694:48884..48987TCONS_00037247-exon-sc0001595-1575043694:48884..48987Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1491911889:49104..49195TCONS_00037247-exon-sc0001595-1491911889:49104..49195Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1510915933:49104..49195TCONS_00037247-exon-sc0001595-1510915933:49104..49195Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1575043694:49104..49195TCONS_00037247-exon-sc0001595-1575043694:49104..49195Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1491911889:49484..50270TCONS_00037247-exon-sc0001595-1491911889:49484..50270Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1510915933:49484..50270TCONS_00037247-exon-sc0001595-1510915933:49484..50270Clytia hemisphaericaexon
TCONS_00037247-exon-sc0001595-1575043694:49484..50270TCONS_00037247-exon-sc0001595-1575043694:49484..50270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001595supercontigsc0001595:46492..50270 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.62606	4.64602	3.66084	5.06761	3.56198	3.51192	2.23944	0	1.96626	0	0	0	0	1.13742	0	0	0	1.91761	0	0	1.63591	2.54262	3.04607	0	3.79985	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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