TCONS_00037246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037246
Unique NameTCONS_00037246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037246 ID=TCONS_00037246|Name=TCONS_00037246|organism=Clytia hemisphaerica|type=transcript|length=1005bp
AACCTGGCGTCAGAGATTCACTTCACAAACCTACTCTGAAAACAGAGCAA
GTCTACAGGGATGTATATGATGGGCAATCCTACCAAGAACTCATTCGACT
TGGATATTTCAACAAAGAATTGAGCCTAACATGTCAAATGAACACTGATG
GCGTCAGCCTCTTCAATAGTAGTTCTTTTTCAGTATGGCCAGTTTATCTG
CGTATCAATGAACTGCCACCTAAAATGAGGAAATCAAAAAAGTACAGAAT
CTTTGCTGGGCTCTGGTTTGGTTATAACAAGCCTTACATGAGGACATTTT
TGCGACCATTAGTTGAGGAAATGAAGAAGCTCACATTTGAAGGGTTTTCA
ATGATTGAGGAAGAAAGTGGCAAAAAAATGGAGGGGAAGATGGCAATAAC
TGGTGGACTGTTCGATCTACCAGCAAAATGTTTGGTTCAAGAAACGGTTC
AGTTCAACGGCTACCATGGTTGCAGCTGCTGTGAAATTGAGGGAGAGGCT
GTGGCTTCAAATGTAGTTTTTCCTTTCGTTGAAAATCAAGAACAAAGAAG
TCAACTGAGAACACTTGGACAAGCTATGCTTGCTTTAGAAACAAATGAAA
CAGTTTTTGGTATACGTGGATACTCGATCCTTGGTGAACTGCCATTTATT
GATATAATTTGGAATATACCGTACGACTATATGCATGGCATATTTCAAGG
TGTAGCGAAATCACTAAATAGGTTATGGTTTGACTCTGCACACTCAAAAG
AACCATGGTATCTTGGCAAGGACGTTCATATTATTGATAAGGCACTGCTT
TCATTGAGACCACCTGATGAAGTCACCAGACTGCCACGAAGTTTGGTCGC
ACATCGcaattattttaaagCAAATGAGTGTCGAAATTGGATGTTCTACT
ATGCCCCTATGATCTTNattctggtctgtaaaatatttaggtaccccaca
acctagcccaattggctaccccaattggctaccctgctttttagaccaac
ccgat
Run BLAST on NCBI

transcript from alignment at sc0001595:39942..43022+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037246 ID=TCONS_00037246|Name=TCONS_00037246|organism=Clytia hemisphaerica|type=transcript|length=3081bp|location=Sequence derived from alignment at sc0001595:39942..43022+ (Clytia hemisphaerica)
AACCTGGCGTCAGAGATTCACTTCACAAACCTACTCTGAAAACAGAGCAA
GTCTACAGGGATGTATATGATGGGCAATCCTACCAAGAACTCATTCGACT
TGGATATTTCAACAAAGAATTGAGCCTAACATGTCAAATGAACACTGATG
GCGTCAGCCTCTTCAATAGTAGTTCTTTTTCAGTATGGCCAGTTTATCTG
CGTATCAATGAACTGCCACCTAAAATGAGGTATATAATAAGTATACTTTT
AAAGGGATAGCCAGATTATCATGAAATTCAAAGAGCCCATAGATTTCTTC
TATAGTCCAAATTTTACGGTGTAATTGTTTTTTAAAGGAACGATATTTAG
GtttgtattttttaaatctGCTTGATAAAAACAATAGTGAGGTAGGTAGT
GGCAGTGCGTATATCCAGAAGAGAAGCTCAAGCAGAATGAAGGAGATATG
CCGTAGCCTAGAATTTGTTTTGCTCaataagaaaatcttttgtgtacAAG
ATTATTAATAgataaattttcaacatttataATGAAAGGTAAATATTATT
TGTTTAGGAAATCAAAAAAGTACAGAATCTTTGCTGGGCTCTGGTTTGGT
TATAACAAGCCTTACATGAGGACATTTTTGCGACCATTAGTTGAGGAAAT
GAAGAAGCTCACATTTGAAGGTTTACTCCTATTTAGCTTTATATGAATTA
TACCTTAATAAAAGTACTATTTTTGCGCGTActaatttttgttcaatttc
gcGCAGAGGCTTGGAAATGTACAAAATTTAATACACTAATACCAAAATTA
TGTGCAATGCTAAGGTGTACAactaaatcttttcaaaattttcctaaaaa
tatcATGAAACCAAGTCACAAGATATTGAGCTTTGTTATCATAATAAGAT
TTCATACTCAGAGTTTCAGCCCCTACATATTGATTGCATAATTCTGTTTA
TATCAAGTATTGTCCTCTCACACAGGTAATTATGGTAAAAGTTTGAGTAT
GTACTGTCATTCTCTTAGGGTTTTCAATGATTGAGGAAGAAAGTGGCAAA
AAAATGGAGGGGAAGATGGCAATAACTGGTGGACTGTTCGATCTACCAGG
TGAATTTGTATATATTATTCTGTGGATTACTCTTTTTTGCCTAATGGAAC
ATGAGTGTAAAAATCAGAATACCAGTTCTTGTATTATTTTTAAAcaagat
ttattaaaatttaaaatagtgaTCTTATGAATTTTAAGAACCCTTCAACC
GAAAAAAGTGCTTCCAGAAGTTCTTTTTAGGTTTCAGATATCAAACTTAA
TTTTATAATATAAATCAAATGAAACTGGAATTTCTCTTAGCAAAATGTTT
GGTTCAAGAAACGGTTCAGTTCAACGGCTACCATGGTTGCAGCTGCTGTG
AAATTGAGGGAGAGGCTGTGGCTTCAAATGTAGTTTTTCCTTTCGTTGAA
AATCAAGAACAAAGAAGTCAACTGAGAACACTTGGACAAGCTATGCTTGC
TTTAGAAACAAATGAAACAGTTAGTATTGTTTTTTGTCTGTTTGGGAAAA
AATGTGTCATCACAAGCGATTTTAAATACAAATGGTTTGGAACGTTCCaa
agaaaaacaatgaaataaacgTTCTGGAACGTTCCAGAGGGGTAAACATT
GATAGTTGGCAGAAATCAATATTTAGCAAACTGTTGACAATTTCATTTaa
gatcgaagttttttttttcaaaaaattctcacTTTACCGTCTGAAGACCC
TTTTGGCTCCGAAATTGTTTTGATTGTATTTTTGCACTTtgatccaattt
tgaacttttcgaatttcgaatAATACAATATATAATCTgttctgccaccc
aaatctcctgatagaagatagttggacagaaattctttgaatttcagGTT
TTTGGTATACGTGGATACTCGATCCTTGGTGAACTGCCATTTATTGATAT
AATTTGGAATATACCGTACGACTATATGCATGGCATATTTCAAGGTGTAG
CGAAGTAAGTGATTTTGAATTCTGACCGATGCAATTACTTTTAACTTAGA
TTGGATAATGattataagaaaatataaaatttttgaataattgcTGTTTT
CTTTCAAGTAAAGACAATGGATCACATAAAAATTATTTGAGAGCAAAGAT
TTTGTGTTTATTACCTATTTGTGTCATGCCAAACCATTTCAATATACTTC
ACATGTGCTCTTACACTGATTAGTACTGGTggtgtatttattttttctac
tgGTGCTGAAACTGGTAGCTGAAAGATGTAAACCTGTAGACACTGGTAGC
ACACTGATGGGGACTGGTTTAAGCACTGTTGTACAATTTTAATTTGAGAG
AAATCACTTGGTATATGACATAATTTGGCGTTTTTATGCATAGAGAGTTC
TTATTATTTCGTTTAGATCACTAAATAGGTTATGGTTTGACTCTGCACAC
TCAAAAGAACCATGGTATCTTGGCAAGGACGTTCATATTATTGATAAGGC
ACTGCTTTCATTGAGACCACCTGATGAAGTCACCAGACTGCCACGAAGTT
TGGTCGCACATCGcaattattttaaaggtattttgtAACCCAAAAAACTC
ATTTCATCTTGTTGACATTTTTTTATGATTGATTCAAATCGAAAAGTATG
TAATTTTTATAAGTTTTCGCATAGGTGAAATGAAAACCCATTTAGACAAT
CTATTGCAGGGCTCCTAGACGTCCTAATTTTACTAAATGTACTAATCTtg
gagaaatttgaaaaaagtcctgTTTTTCCTAATTACTGAGTACTTTTTCC
TATATTATCATATTTTGTCCTCATACTACAATTTTCTTTGAATCTTCCTC
AAAATTCATTTGAAAGGTAGCTTGAAATGGCAGTTTTTGCATCTCACAAG
TCCAGTTGATGATCCAACAATATAACATTCGTTTTTTTCTCTTTAGCAAA
TGAGTGTCGAAATTGGATGTTCTACTATGCCCCTATGATCTTNattctgg
tctgtaaaatatttaggtaccccacaacctagcccaattggctaccccaa
ttggctaccctgctttttagaccaacccgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022044XLOC_022044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037246-exon-sc0001595-1491911889:39942..40170TCONS_00037246-exon-sc0001595-1491911889:39942..40170Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1510915933:39942..40170TCONS_00037246-exon-sc0001595-1510915933:39942..40170Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1575043694:39942..40170TCONS_00037246-exon-sc0001595-1575043694:39942..40170Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1491911889:40499..40611TCONS_00037246-exon-sc0001595-1491911889:40499..40611Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1510915933:40499..40611TCONS_00037246-exon-sc0001595-1510915933:40499..40611Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1575043694:40499..40611TCONS_00037246-exon-sc0001595-1575043694:40499..40611Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1491911889:40960..41040TCONS_00037246-exon-sc0001595-1491911889:40960..41040Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1510915933:40960..41040TCONS_00037246-exon-sc0001595-1510915933:40960..41040Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1575043694:40960..41040TCONS_00037246-exon-sc0001595-1575043694:40960..41040Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1491911889:41282..41460TCONS_00037246-exon-sc0001595-1491911889:41282..41460Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1510915933:41282..41460TCONS_00037246-exon-sc0001595-1510915933:41282..41460Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1575043694:41282..41460TCONS_00037246-exon-sc0001595-1575043694:41282..41460Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1491911889:41839..41945TCONS_00037246-exon-sc0001595-1491911889:41839..41945Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1510915933:41839..41945TCONS_00037246-exon-sc0001595-1510915933:41839..41945Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1575043694:41839..41945TCONS_00037246-exon-sc0001595-1575043694:41839..41945Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1491911889:42358..42518TCONS_00037246-exon-sc0001595-1491911889:42358..42518Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1510915933:42358..42518TCONS_00037246-exon-sc0001595-1510915933:42358..42518Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1575043694:42358..42518TCONS_00037246-exon-sc0001595-1575043694:42358..42518Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1491911889:42888..43022TCONS_00037246-exon-sc0001595-1491911889:42888..43022Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1510915933:42888..43022TCONS_00037246-exon-sc0001595-1510915933:42888..43022Clytia hemisphaericaexon
TCONS_00037246-exon-sc0001595-1575043694:42888..43022TCONS_00037246-exon-sc0001595-1575043694:42888..43022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001595supercontigsc0001595:39942..43022 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0576086	0.118673	1.57268	0.229586	0.439983	1.6529	0.449555	0.674941	0.334124	0.440082	1.61366	2.01287	0.0573958	0	0	0.0377543	0	0.111755	0.0447797	0	0.111258	0	1.5233	2.58345	0	0.139782	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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