TCONS_00037245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037245
Unique NameTCONS_00037245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037245 ID=TCONS_00037245|Name=TCONS_00037245|organism=Clytia hemisphaerica|type=transcript|length=1211bp
AAATTGGCATTGTTAAGAAGCTCTCATTCAGATCTCTCAAGCAGAACCTG
GCGTCAGAGATTCACTTCACAAACCTACTCTGAAAACAGAGCAAGTCTAC
AGGGATGTATATGATGGGCAATCCTACCAAGAACTCATTCGACTTGGATA
TTTCAACAAAGAATTGAGCCTAACATGTCAAATGAACACTGATGGCGTCA
GCCTCTTCAATAGTAGTTCTTTTTCAGTATGGCCAGTTTATCTGCGTATC
AATGAACTGCCACCTAAAATGAGGAAATCAAAAAAGTACAGAATCTTTGC
TGGGCTCTGGTTTGGTTATAACAAGCCTTACATGAGGACATTTTTGCGAC
CATTAGTTGAGGAAATGAAGAAGCTCACATTTGAAGGGTTTTCAATGATT
GAGGAAGAAAGTGGCAAAAAAATGGAGGGGAAGATGGCAATAACTGGTGG
ACTGTTCGATCTACCAGCAAAATGTTTGGTTCAAGAAACGGTTCAGTTCA
ACGGCTACCATGGTTGCAGCTGCTGTGAAATTGAGGGAGAGGCTGTGGCT
TCAAATGTAGTTTTTCCTTTCGTTGAAAATCAAGAACAAAGAAGTCAACT
GAGAACACTTGGACAAGCTATGCTTGCTTTAGAAACAAATGAAACAGTTT
TTGGTATACGTGGATACTCGATCCTTGGTGAACTGCCATTTATTGATATA
ATTTGGAATATACCGTACGACTATATGCATGGCATATTTCAAGGTGTAGC
GAAATCACTAAATAGGTTATGGTTTGACTCTGCACACTCAAAAGAACCAT
GGTATCTTGGCAAGGACGTTCATATTATTGATAAGGCACTGCTTTCATTG
AGACCACCTGATGAAGTCACCAGACTGCCACGAAGTTTGGTCGCACATCG
caattattttaaagCAAATGAGTGTCGAAATTGGATGTTCTACTATGCCC
CTATGATCTTAAATGGAATTTTGCCAGATCCTTACTTTAGCCATTTTCTC
CTTGTTGTAAATGGAATATTCATacttcaaaaagaagaaattactGAAAC
CGAGTTGGAATTTGCAGAAAAATGTCTCAAAAGATTTGCAGTAGACATGA
AGGAAGTTTATGGTATTAATGTTTTCAGTATTCATTGTAAATGgggttta
aaaattttgaaactttataACAGAGGTTAGTTTTATTGAATGAGGGCTTT
GATTTTGGAAG
Run BLAST on NCBI

transcript from alignment at sc0001595:38903..44174+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037245 ID=TCONS_00037245|Name=TCONS_00037245|organism=Clytia hemisphaerica|type=transcript|length=5272bp|location=Sequence derived from alignment at sc0001595:38903..44174+ (Clytia hemisphaerica)
AAATTGGCATTGTTAAGAAGCTCTCATTCAGATCTCTCAAGCAGGTATAa
gcagtagcggcctggcttaaatttcttggtggtgcaaattatgaaattgg
cgcccctggcgtttttgtccttatttgcaccctccatcattaagtgaaaa
tattaaactgtaagagcagtgactggttgaaagtaacgcccctaatcttt
gaaatggaaattttatacctgGTAAGTCGATTTAGTCTACATTTCTGCTT
TCTAAAACTCTTATCAGAAAAATTGCCAGATAATATTTAAACTTTCGCAA
CTCTctattaaagatcaatggctgaaagaggccccaaaaattcagAAGTT
GGGAGGAAGGGTTCCTTGTTATtgtggcgccgcaggcaaaaaaatttggt
gtaagaaaggtcaaacagcttaaggGATCTTCTAAAACGGAGAAAGTTAG
NATtgtggcgccgcaggcaaaaaattttggtgtaagaaaggtcaaacagc
ttaagagatcttctaaaacggagaaagttagtcagtatAAGACCACAAAA
CCACAGCAAgaatcaacaagttttgatcattttggcaatctctcattttg
ggggtgagcattctctttaaccccgatggatacacaacacttctctacTT
CGGATTCAATATTGatagaagttttgaaaaaattcaagagagGAAGGATG
CAAAAGGGTAAAataaagcgccgcaggcgaaaaaagtTAACATTGTACTC
ATAAAAGGCGCTATAAACGTGCCGAAGGGCGCCAAattgcccaattaaac
atcaacaaaattttggcgccccccttaaaaagctcttttggcgcccctat
cagatctttctgggtggtgcactgcacaccctgcaccccctgccaggccg
ccactgggTATAAGCTGTTTTGTGTGGTGTTggcaaatgaaaataaattt
ttaatgtttttgtgaccagaaaaaagttgtaaattAATATAGAAAAATTT
ACCTTACATTCTTTTCTTTTACCTTTGGACAATTTTTAGAACCTGGCGTC
AGAGATTCACTTCACAAACCTACTCTGAAAACAGAGCAAGTCTACAGGGA
TGTATATGATGGGCAATCCTACCAAGAACTCATTCGACTTGGATATTTCA
ACAAAGAATTGAGCCTAACATGTCAAATGAACACTGATGGCGTCAGCCTC
TTCAATAGTAGTTCTTTTTCAGTATGGCCAGTTTATCTGCGTATCAATGA
ACTGCCACCTAAAATGAGGTATATAATAAGTATACTTTTAAAGGGATAGC
CAGATTATCATGAAATTCAAAGAGCCCATAGATTTCTTCTATAGTCCAAA
TTTTACGGTGTAATTGTTTTTTAAAGGAACGATATTTAGGtttgtatttt
ttaaatctGCTTGATAAAAACAATAGTGAGGTAGGTAGTGGCAGTGCGTA
TATCCAGAAGAGAAGCTCAAGCAGAATGAAGGAGATATGCCGTAGCCTAG
AATTTGTTTTGCTCaataagaaaatcttttgtgtacAAGATTATTAATAg
ataaattttcaacatttataATGAAAGGTAAATATTATTTGTTTAGGAAA
TCAAAAAAGTACAGAATCTTTGCTGGGCTCTGGTTTGGTTATAACAAGCC
TTACATGAGGACATTTTTGCGACCATTAGTTGAGGAAATGAAGAAGCTCA
CATTTGAAGGTTTACTCCTATTTAGCTTTATATGAATTATACCTTAATAA
AAGTACTATTTTTGCGCGTActaatttttgttcaatttcgcGCAGAGGCT
TGGAAATGTACAAAATTTAATACACTAATACCAAAATTATGTGCAATGCT
AAGGTGTACAactaaatcttttcaaaattttcctaaaaatatcATGAAAC
CAAGTCACAAGATATTGAGCTTTGTTATCATAATAAGATTTCATACTCAG
AGTTTCAGCCCCTACATATTGATTGCATAATTCTGTTTATATCAAGTATT
GTCCTCTCACACAGGTAATTATGGTAAAAGTTTGAGTATGTACTGTCATT
CTCTTAGGGTTTTCAATGATTGAGGAAGAAAGTGGCAAAAAAATGGAGGG
GAAGATGGCAATAACTGGTGGACTGTTCGATCTACCAGGTGAATTTGTAT
ATATTATTCTGTGGATTACTCTTTTTTGCCTAATGGAACATGAGTGTAAA
AATCAGAATACCAGTTCTTGTATTATTTTTAAAcaagatttattaaaatt
taaaatagtgaTCTTATGAATTTTAAGAACCCTTCAACCGAAAAAAGTGC
TTCCAGAAGTTCTTTTTAGGTTTCAGATATCAAACTTAATTTTATAATAT
AAATCAAATGAAACTGGAATTTCTCTTAGCAAAATGTTTGGTTCAAGAAA
CGGTTCAGTTCAACGGCTACCATGGTTGCAGCTGCTGTGAAATTGAGGGA
GAGGCTGTGGCTTCAAATGTAGTTTTTCCTTTCGTTGAAAATCAAGAACA
AAGAAGTCAACTGAGAACACTTGGACAAGCTATGCTTGCTTTAGAAACAA
ATGAAACAGTTAGTATTGTTTTTTGTCTGTTTGGGAAAAAATGTGTCATC
ACAAGCGATTTTAAATACAAATGGTTTGGAACGTTCCaaagaaaaacaat
gaaataaacgTTCTGGAACGTTCCAGAGGGGTAAACATTGATAGTTGGCA
GAAATCAATATTTAGCAAACTGTTGACAATTTCATTTaagatcgaagttt
tttttttcaaaaaattctcacTTTACCGTCTGAAGACCCTTTTGGCTCCG
AAATTGTTTTGATTGTATTTTTGCACTTtgatccaattttgaacttttcg
aatttcgaatAATACAATATATAATCTgttctgccacccaaatctcctga
tagaagatagttggacagaaattctttgaatttcagGTTTTTGGTATACG
TGGATACTCGATCCTTGGTGAACTGCCATTTATTGATATAATTTGGAATA
TACCGTACGACTATATGCATGGCATATTTCAAGGTGTAGCGAAGTAAGTG
ATTTTGAATTCTGACCGATGCAATTACTTTTAACTTAGATTGGATAATGa
ttataagaaaatataaaatttttgaataattgcTGTTTTCTTTCAAGTAA
AGACAATGGATCACATAAAAATTATTTGAGAGCAAAGATTTTGTGTTTAT
TACCTATTTGTGTCATGCCAAACCATTTCAATATACTTCACATGTGCTCT
TACACTGATTAGTACTGGTggtgtatttattttttctactgGTGCTGAAA
CTGGTAGCTGAAAGATGTAAACCTGTAGACACTGGTAGCACACTGATGGG
GACTGGTTTAAGCACTGTTGTACAATTTTAATTTGAGAGAAATCACTTGG
TATATGACATAATTTGGCGTTTTTATGCATAGAGAGTTCTTATTATTTCG
TTTAGATCACTAAATAGGTTATGGTTTGACTCTGCACACTCAAAAGAACC
ATGGTATCTTGGCAAGGACGTTCATATTATTGATAAGGCACTGCTTTCAT
TGAGACCACCTGATGAAGTCACCAGACTGCCACGAAGTTTGGTCGCACAT
CGcaattattttaaaggtattttgtAACCCAAAAAACTCATTTCATCTTG
TTGACATTTTTTTATGATTGATTCAAATCGAAAAGTATGTAATTTTTATA
AGTTTTCGCATAGGTGAAATGAAAACCCATTTAGACAATCTATTGCAGGG
CTCCTAGACGTCCTAATTTTACTAAATGTACTAATCTtggagaaatttga
aaaaagtcctgTTTTTCCTAATTACTGAGTACTTTTTCCTATATTATCAT
ATTTTGTCCTCATACTACAATTTTCTTTGAATCTTCCTCAAAATTCATTT
GAAAGGTAGCTTGAAATGGCAGTTTTTGCATCTCACAAGTCCAGTTGATG
ATCCAACAATATAACATTCGTTTTTTTCTCTTTAGCAAATGAGTGTCGAA
ATTGGATGTTCTACTATGCCCCTATGATCTTNattctggtctgtaaaata
tttaggtaccccacaacctagcccaattggctaccccaattggctaccct
gctttttagaccaacccgatTTTGTGTTTATTACCTATTTGTGTCATGCC
AAACCATTTCAATATACTTAACATGTGCTCTTACACTGATTAGCACTGGT
ggtgtatttattttttctattggtGCTGAAACTGGTAGCTGAAAGATGTA
AACCTGTAGACACTGGTAGTACACTGATGGGGACTGGTTTAAGCACTGTT
GTACAATTTTAATTTGAGAGAAATCACTTGGTATATGACANGACACTGGT
AGTACACTGATGGGGACTGGTTTAAGCACTGTTGTACAATTTTAATTTGA
GAGAAATCACTTGGTATATGACATAATTTGGCGTTTTTATGCATAGAGAG
TTCTTATTATTTCGTTTAGATCACTAAATAGGTTATGGTTTGACTCTGCA
CACTCAAAAGAACCATGGTATCTTGGCAAGGACGTTCATATTATTGATAA
GGCACTGCTTTCATTGAGACCACCTGATGAAGTCACCAGACTGCCACGAA
GTTTGGTCGCACATCGcaattattttaaaggtattttgtAACCCAAAAAA
CTCATTTCATCTTGTTGACATTTTTTTATGATTGATTCAAATCGAAAAGT
ATGTAATTTTTATAAGTTTTCGCATAGGTGAAATGAAAACCCATTTAGAC
AATCTATGGCAGTTTTTGCATCTCACAAGTCAAAAATTATTCTCAGCCAG
TTGATGATCCAACAATATAACATTCGTTTTTTTCTCTTTAGCAAATGAGT
GTCGAAATTGGATGTTCTACTATGCCCCTATGATCTTAAATGGAATTTTG
CCAGATCCTTACTTTAGGTAAGAACACACTGATTTCGAATTAGTTTTTTG
CGTAATAGCTTTTGTACCTAATAAGCGTCCTCCTCTAATTAATTTCTTTG
CCCAAGTTGAATCACACGATCCTATACACAATACTTTATTTCCTTTCTTA
GCCATTTTCTCCTTGTTGTAAATGGAATATTCATacttcaaaaagaagaa
attactGAAACCGAGTTGGAATTTGCAGAAAAATGTCTCAAAAGATTTGC
AGTAGACATGAAGGAAGTTTATGGTATTAATGTTTTCAGTATTCATTGTA
AATGgggtttaaaaattttgaaactttataACAGAGGTTAGTTTTATTGA
ATGAGGGCTTTGATTTTGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022044XLOC_022044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037245-exon-sc0001595-1491911889:38903..38946TCONS_00037245-exon-sc0001595-1491911889:38903..38946Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1510915933:38903..38946TCONS_00037245-exon-sc0001595-1510915933:38903..38946Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1575043694:38903..38946TCONS_00037245-exon-sc0001595-1575043694:38903..38946Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1491911889:39942..40170TCONS_00037245-exon-sc0001595-1491911889:39942..40170Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1510915933:39942..40170TCONS_00037245-exon-sc0001595-1510915933:39942..40170Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1575043694:39942..40170TCONS_00037245-exon-sc0001595-1575043694:39942..40170Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1491911889:40499..40611TCONS_00037245-exon-sc0001595-1491911889:40499..40611Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1510915933:40499..40611TCONS_00037245-exon-sc0001595-1510915933:40499..40611Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1575043694:40499..40611TCONS_00037245-exon-sc0001595-1575043694:40499..40611Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1491911889:40960..41040TCONS_00037245-exon-sc0001595-1491911889:40960..41040Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1510915933:40960..41040TCONS_00037245-exon-sc0001595-1510915933:40960..41040Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1575043694:40960..41040TCONS_00037245-exon-sc0001595-1575043694:40960..41040Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1491911889:41282..41460TCONS_00037245-exon-sc0001595-1491911889:41282..41460Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1510915933:41282..41460TCONS_00037245-exon-sc0001595-1510915933:41282..41460Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1575043694:41282..41460TCONS_00037245-exon-sc0001595-1575043694:41282..41460Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1491911889:41839..41945TCONS_00037245-exon-sc0001595-1491911889:41839..41945Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1510915933:41839..41945TCONS_00037245-exon-sc0001595-1510915933:41839..41945Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1575043694:41839..41945TCONS_00037245-exon-sc0001595-1575043694:41839..41945Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1491911889:43372..43532TCONS_00037245-exon-sc0001595-1491911889:43372..43532Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1510915933:43372..43532TCONS_00037245-exon-sc0001595-1510915933:43372..43532Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1575043694:43372..43532TCONS_00037245-exon-sc0001595-1575043694:43372..43532Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1491911889:43744..43819TCONS_00037245-exon-sc0001595-1491911889:43744..43819Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1510915933:43744..43819TCONS_00037245-exon-sc0001595-1510915933:43744..43819Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1575043694:43744..43819TCONS_00037245-exon-sc0001595-1575043694:43744..43819Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1491911889:43954..44174TCONS_00037245-exon-sc0001595-1491911889:43954..44174Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1510915933:43954..44174TCONS_00037245-exon-sc0001595-1510915933:43954..44174Clytia hemisphaericaexon
TCONS_00037245-exon-sc0001595-1575043694:43954..44174TCONS_00037245-exon-sc0001595-1575043694:43954..44174Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001595supercontigsc0001595:38903..44174 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.28561	1.84126	1.45783	1.17352	0.724804	0.49565	0.184779	0.217024	0.390275	0.116761	0	0	0	0	0	0	0	0	0	0.0184542	0.862983	0.688827	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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