TCONS_00037240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037240
Unique NameTCONS_00037240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037240 ID=TCONS_00037240|Name=TCONS_00037240|organism=Clytia hemisphaerica|type=transcript|length=243bp
TGACTGTTCATTGTCAAGCAACTTCATCCAGccagccaattttttttaac
atccaATTTAAGATAGATtgtctaccatatttgttttgattttgaaatac
ctttaaatatatattttgcacGCTCGCAAGCTAAGCGAAACAAACTGaca
gatttctttacctaagtaGTACGCGCTCAGCTAGGCTAGAAAATCCCGAT
TTTTTGTTTATGAACAGGCCTAGTCTAGAATGTGAGACACTGG
Run BLAST on NCBI

transcript from alignment at sc0001594:36134..36376

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037240 ID=TCONS_00037240|Name=TCONS_00037240|organism=Clytia hemisphaerica|type=transcript|length=243bp|location=Sequence derived from alignment at sc0001594:36134..36376 (Clytia hemisphaerica)
CCAGTGTCTCACATTCTAGACTAGGCCTGTTCATAAACAAAAAATCGGGA
TTTTCTAGCCTAGCTGAGCGCGTACtacttaggtaaagaaatctgtCAGT
TTGTTTCGCTTAGCTTGCGAGCgtgcaaaatatatatttaaaggtatttc
aaaatcaaaacaaatatggtagacaATCTATCTTAAATtggatgttaaaa
aaaattggctggCTGGATGAAGTTGCTTGACAATGAACAGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022040XLOC_022040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037240-exon-sc0001594-1491911889:36134..36376TCONS_00037240-exon-sc0001594-1491911889:36134..36376Clytia hemisphaericaexon
TCONS_00037240-exon-sc0001594-1510915933:36134..36376TCONS_00037240-exon-sc0001594-1510915933:36134..36376Clytia hemisphaericaexon
TCONS_00037240-exon-sc0001594-1575043694:36134..36376TCONS_00037240-exon-sc0001594-1575043694:36134..36376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001594supercontigsc0001594:36134..36376 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.94094	1.90677	2.82121	4.63503	2.70683	2.0351	0.873772	3.07636	1.87355	0	1.32289	0.591992	0.486698	0.522302	0	1.319	0.911132	3.46734	2.12504	2.30724e-05	0	0	0.920246	0.821298	1.84425	0	0	0.969255
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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