TCONS_00037234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037234
Unique NameTCONS_00037234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037234 ID=TCONS_00037234|Name=TCONS_00037234|organism=Clytia hemisphaerica|type=transcript|length=473bp
TGCAATTAAAATGAGATGACTTTTTGCAGTCATTAGGGACGCGTGCGTCT
AACACTGCCCCAACTGAGATGCAAAAAGTCACCCTAAGTGAAATGTGTGt
gtgttttctatttttttttatacaCTAATGAATTAGCATTGATCTGCCAT
ATCGTTCAATTGTTCAATAATTGACTTCTCATTAACGTAATGAATAACAA
TTAGCTCCCGAACATGTCGGACGGTAGTCCTGTTACAGTTCTCAGAGTGA
TTTCGATAACATACTTTAACTTGACGAATTTTGTTATCCTTGCTCATAAC
AGTATCTTCAACCATACCATACTGGTATGTTAATTTCAATGGACTATTTT
TCAAGAACAAAACAACATCTCCTATACGAATATCAGCATCAGACTTAAAC
CACTTTGGTTGATTGATGAGTTTAGGCACATGATTGATAAGCCAACTATC
AAACCAAGATTGATAGATTAACG
Run BLAST on NCBI

protein sequence of TCONS_00037234-protein

>TCONS_00037234-protein ID=TCONS_00037234-protein|Name=TCONS_00037234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
LIYQSWFDSWLINHVPKLINQPKWFKSDADIRIGDVVLFLKNSPLKLTYQ
YGMVEDTVMSKDNKIRQVKVCYRNHSENCNRTTVRHVRELIVIHYVNEKS
IIEQLNDMADQC
Run BLAST on NCBI

transcript from alignment at sc0001594:10307..10779

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037234 ID=TCONS_00037234|Name=TCONS_00037234|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at sc0001594:10307..10779 (Clytia hemisphaerica)
CGTTAATCTATCAATCTTGGTTTGATAGTTGGCTTATCAATCATGTGCCT
AAACTCATCAATCAACCAAAGTGGTTTAAGTCTGATGCTGATATTCGTAT
AGGAGATGTTGTTTTGTTCTTGAAAAATAGTCCATTGAAATTAACATACC
AGTATGGTATGGTTGAAGATACTGTTATGAGCAAGGATAACAAAATTCGT
CAAGTTAAAGTATGTTATCGAAATCACTCTGAGAACTGTAACAGGACTAC
CGTCCGACATGTTCGGGAGCTAATTGTTATTCATTACGTTAATGAGAAGT
CAATTATTGAACAATTGAACGATATGGCAGATCAATGCTAATTCATTAGt
gtataaaaaaaaatagaaaacacaCACACATTTCACTTAGGGTGACTTTT
TGCATCTCAGTTGGGGCAGTGTTAGACGCACGCGTCCCTAATGACTGCAA
AAAGTCATCTCATTTTAATTGCA

Coding sequence (CDS) from alignment at sc0001594:10307..10779

>TCONS_00037234 ID=TCONS_00037234|Name=TCONS_00037234|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0001594:10307..10779 (Clytia hemisphaerica)
TTAATCTATCAATCTTGGTTTGATAGTTGGCTTATCAATCATGTGCCTAA
ACTCATCAATCAACCAAAGTGGTTTAAGTCTGATGCTGATATTCGTATAG
GAGATGTTGTTTTGTTCTTGAAAAATAGTCCATTGAAATTAACATACCAG
TATGGTATGGTTGAAGATACTGTTATGAGCAAGGATAACAAAATTCGTCA
AGTTAAAGTATGTTATCGAAATCACTCTGAGAACTGTAACAGGACTACCG
TCCGACATGTTCGGGAGCTAATTGTTATTCATTACGTTAATGAGAAGTCA
ATTATTGAACAATTGAACGATATGGCAGATCAATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022034XLOC_022034Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037234-proteinTCONS_00037234-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037234-exon-sc0001594-1491911889:10307..10779TCONS_00037234-exon-sc0001594-1491911889:10307..10779Clytia hemisphaericaexon
TCONS_00037234-exon-sc0001594-1510915933:10307..10779TCONS_00037234-exon-sc0001594-1510915933:10307..10779Clytia hemisphaericaexon
TCONS_00037234-exon-sc0001594-1575043694:10307..10779TCONS_00037234-exon-sc0001594-1575043694:10307..10779Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001594supercontigsc0001594:10307..10779 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.255033	0	0.898498	0.763565	1.22712	2.63684	3.17911	4.10503	3.25375	2.16732	0.761369	1.4377	2.49073	3.68631	5.09712	6.87279	1.50889	1.71421	2.8716	3.55181	0.633724	0.190128	0.420091	0.211972	0.577135	2.12948	0.8919	0.393314	0.242688	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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