|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037229 ID=TCONS_00037229|Name=TCONS_00037229|organism=Clytia hemisphaerica|type=transcript|length=1933bp
atgacgtcattttggcttatttccttaatatctcctgatatattcatttt
cagatataggttgtgacctttttctttatcagtttttcatgctctttgGA
ATGGAACAAACATTTTTCAATTTTGATGACTTTTTATTttggttgccata
gtaaccaatgacgtcagtttccatggcaacgggtggtcacacccggcccc
acctctcaaattttgatcttctacattcaaggaacaatattcaatcataa
aatccctttgcacaagctgctgcacacgggaagctttttcgcgacatagt
ggccTTTACTATTGGGAATTTCTCAACGAGAATGGGACCATGATTACTGC
GTCCTGGATCCcatcaaaagaaaacaaaatagcGGATTGGAGGTCAAGAC
AAAAAGCAAACTCCAGCGAGTGGGAGCTATCAAACCAAATATTTTGGAAA
CTAACAAATTTATGGGGATTACCGGAAATAGATTGCTTTGCATCAAGGAT
AATGAGAAAACTACCTCTTTACATGTCCCTAAATCCAGACCCAGAGTCGT
TAGCAACAAATTCTCTTTACCAGAACTGGGGAAAATACCCTTACCTGTTT
CCACCCTTTTGCCTAATGGGCAGGGTTTTAAAGATCATCAAGAAACAATC
AACTCCAAAAGCGCTAGTAATAGCTCCGCTTTGGCCAGGACAACCTTGGT
TTCCAGTGTTGCTATCAATGTTGATAGCAGAACCTGTCCTGTTACCTCAG
AAAAGAAACATACTTCTGAATCACATGCAAAAACCACACCCGTTAGTCTT
AAACCACACCCTACAACTTGCGGCGTTTCTAGTATCCGGGAACAGTTACA
GAAGCAAGGCTTTTCAGAATCAGCTTCCTCAATCATGGTCCAGGCAAGAC
GCGAAAGCACAACTTGTGCTTACAAAACGCCTTGGAGAAAGTGGGTTCTG
TGGTGTGGCGGGAAACAGGTGGATCCCTTTGAAGCACCTGTAAACGTGGT
AGTTGAGTTTCTCACAGAACTTTACCATGAAGGATATGAATACAGAACTA
TTAATGTGTATCGATCAGCCATATCTGCCTATCATCATCCTGTGAACGGG
ATCAGGGTAGGACAGACTAAAGAAGTTTGTCTATTGTTGTCTGGGATAGA
CAATCTAAGACCCCCGACCCCAAAGTATAATGTAATCTGGGAGGTTGAGG
ACGTCTTGAACTGTTTGAGAGACTTAGGAAAGGACCAAGAGTTGACTAAT
AAGGATTTGACTTTAAAAACAGTTATGCTGATGGCCTTAACTGCCATTAA
GAGATGTTCAGACCTTCACATTTTTGACACAAGATACATGGCAGTTGGAG
AAAATAAAATAGTTTTTAAACTTAGTCAGAAACCAAAAGGTTTTAGGAAA
AAAGGGAAGAGTCCAAAACCGGTGTGCTTTATTGCGTCAGGGGTTAGACT
ATGCCCAGTCTCCACCATCAAAAGTTACATAGACAGAACTAAAGCGTGGA
GAGAAGAGAATGGAGAAACAAGATTTTTTCTCAGTTTTGTCAATCCACAT
AAGGGTGTCACCTCTAGCACTATTGGGAGATGGTTAAAAACAGTCTTAGG
ATGGAACGGTCGCGGAAGAGGACGCGGTTTCAATTAATTTTTATTAAAGA
AATAAAACGATTAACCCTGTACGGGTCAAAAACATATTTATTGTCTCAGA
TTTCTTTTGTGAATCATTTTATAGCGATTTAGATTTAGTTAAAACTTGTT
TCGATCACTCAGGACAATTTTCGGCATTATTCTTTATTATAAAACTCTAG
ATTAAAACCTAACGTAATCTTTATCCATTGTGCTGGTCGGTTAGTTAGGC
CTTTTCGGAACCATGTTCGCACCATAAATTCTCTTAGATTTTCTGAtgta
aaatctaaatttcattTCGCGCGACGCTTCGCG Run BLAST on NCBI transcript from alignment at sc0001592:59543..61921+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037229 ID=TCONS_00037229|Name=TCONS_00037229|organism=Clytia hemisphaerica|type=transcript|length=2379bp|location=Sequence derived from alignment at sc0001592:59543..61921+ (Clytia hemisphaerica)
atgacgtcattttggcttatttccttaatatctcctgatatattcatttt
cagatataggttgtgacctttttctttatcagtttttcatgctctttgGA
ATGGAACAAACATTTTTCAATTTTGATGACTTTTTATTttggttgccata
gtaaccaatgacgtcagtttccatggcaacgggtggtcacacccggcccc
acctctcaaattttgatcttctacattcaaggaacaatattcaatcataa
aatccctttgcacaagctgctgcacacgggaagctttttcgcgacatagt
ggccTTTACTATTGGGAATTTCTCAACGAGAATGGGACCATGATTACTGC
GTCCTGGATCCcatcaaaagaaaacaaaatagcGGATTGGAGGTCAAGAC
AAAAAGCAAACTCCAGCGAGTGGGAGCTATCAAACCAAATATTTTGGAAA
CTAACAAATTTATGGGGATTACCGGAAATAGATTGCTTTGCATCAAGGAT
AATGAGAAAACTACCTCTTTACATGTCCCTAAATCCAGACCCAGAGTCGT
TAGCAACAAATTCTCTTTACCAGAACTGGGGAAAATACCCTTACCTGTTT
CCACCCTTTTGCCTAATGGGCAGGGTTTTAAAGATCATCAAGAAACAATC
AACTCCAAAAGCGCTAGTAATAGCTCCGCTTTGGCCAGGACAACCTTGGT
TTCCAGTGTTGCTATCAATGTTGATAGCAGAACCTGTCCTGTTACCTCAG
AAAAGAAACATACTTCTGAATCACATGCAAAAACCACACCCGTTAGTCTT
AAACCACACCCTACAACTTGCGGCGTTTCTAGTATCCGGGAACAGTTACA
GAAGCAAGGCTTTTCAGAATCAGCTTCCTCAATCATGGTCCAGGCAAGAC
GCGAAAGCACAACTTGTGCTTACAAAACGCCTTGGAGAAAGTGGGTTCTG
TGGTGTGGCGGGAAACAGGTGGATCCCTTTGAAGCACCTGTAAACGTGGT
AGTTGAGTTTCTCACAGAACTTTACCATGAAGGATATGAATACAGAACTA
TTAATGTGTATCGATCAGCCATATCTGCCTATCATCATCCTGTGAACGGG
ATCAGGGTAGGACAGACTAAAGAAGTTTGTCTATTGTTGTCTGGGATAGA
CAATCTAAGACCCCCGACCCCAAAGTATAATGTAATCTGGGAGGTTGAGG
ACGTCTTGAACTGTTTGAGAGACTTAGGAAAGGACCAAGAGTTGACTAAT
AAGGATTTGACTTTAAAAACAGTTATGCTGATGGCCTTAACTGCCATTAA
GAGATGTTCAGACCTTCACATTTTTGACACAAGATACATGGCAGTTGGAG
AAAATAAAATAGTTTTTAAACTTAGTCAGAAACCAAAAGGTTTTAGGAAA
AAAGGGAAGAGTCCAAAACCGGTGTGCTTTATTGCGTCAGGGGTTAGACT
ATGCCCAGTCTCCACCATCAAAAGTTACATAGACAGAACTAAAGCGTGGA
GAGAAGAGAATGGAGAAACAAGATTTTTTCTCAGTTTTGTCAATCCACAT
AAGGGTGTCACCTCTAGCACTATTGGGAGATGGTTAAAAACAGTCTTAGG
TAACGTTGGGGTAGACATCTCAAAATTTACAGCACATTCTACTAGATCTG
CAGCCTCCTCTAAACTCAAGGTATTGGGAGCCTCAGTGTCGGAAATAATG
AATTGTGGGAATTGGAGCAGTGCTTCAACATGGCAAACTTTTTATCATAA
ACCTATTCTTAGCAATCTTGAACAGGCTCAGAAGGAGATGTTAAAATGAG
CTTTGAACAAGGAAGGGCACTGGCCGAACGCGGCCTTTTGGCCACTTTTC
GGATCCCATGGTCGCACCATAAAATCTTGCAAGATTTTTTGATGTAAAAT
TCGAGAATTTTATAAGCGCGACGCGAAGCGTCGCGCGAAATGAAATTTAG
ATTTTACATCAGAAAATCTAAGAGAATTTATGGTGCCTCGCCCTCCCTCC
CTGTTGACATAAATTCTTATCATCTGATTCTATCATATTTTTCAGGATGG
AACGGTCGCGGAAGAGGACGCGGTTTCAATTAATTTTTATTAAAGAAATA
AAACGATTAACCCTGTACGGGTCAAAAACATATTTATTGTCTCAGATTTC
TTTTGTGAATCATTTTATAGCGATTTAGATTTAGTTAAAACTTGTTTCGA
TCACTCAGGACAATTTTCGGCATTATTCTTTATTATAAAACTCTAGATTA
AAACCTAACGTAATCTTTATCCATTGTGCTGGTCGGTTAGTTAGGCCTTT
TCGGAACCATGTTCGCACCATAAATTCTCTTAGATTTTCTGAtgtaaaat
ctaaatttcattTCGCGCGACGCTTCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037229-exon-sc0001592-1491911889:59543..61141 | TCONS_00037229-exon-sc0001592-1491911889:59543..61141 | Clytia hemisphaerica | exon |
| TCONS_00037229-exon-sc0001592-1510915933:59543..61141 | TCONS_00037229-exon-sc0001592-1510915933:59543..61141 | Clytia hemisphaerica | exon |
| TCONS_00037229-exon-sc0001592-1575043694:59543..61141 | TCONS_00037229-exon-sc0001592-1575043694:59543..61141 | Clytia hemisphaerica | exon |
| TCONS_00037229-exon-sc0001592-1491911889:61588..61921 | TCONS_00037229-exon-sc0001592-1491911889:61588..61921 | Clytia hemisphaerica | exon |
| TCONS_00037229-exon-sc0001592-1510915933:61588..61921 | TCONS_00037229-exon-sc0001592-1510915933:61588..61921 | Clytia hemisphaerica | exon |
| TCONS_00037229-exon-sc0001592-1575043694:61588..61921 | TCONS_00037229-exon-sc0001592-1575043694:61588..61921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001592 | supercontig | sc0001592:59543..61921 + |
Blast
The following BLAST results are available for this feature:
|
