TCONS_00037226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037226
Unique NameTCONS_00037226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2923

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037226 ID=TCONS_00037226|Name=TCONS_00037226|organism=Clytia hemisphaerica|type=transcript|length=2923bp
GAGATGCATGCGCTATTCAGCCTTTATATTCTgttcaaaaaattgagaaa
atcctCGCTCTTGCATTCACTCAAAGAAGTTAACTCATGCAAATTCAAAC
AATTTCGTTTTCTATTTCATGCACTTATCTGGACCAACGATCAACCACCA
AGGAATACAATAGAATATACTAAAAGACGATCGATTACCAAAACAAACGC
CGGTCATTGGAGATTGACGCTCTTATCAACATTCACCACCGACAACTTAT
TATCAAACATGGAATCATGGATGTGTTTTATTAAGTTGATGAATTTGGTA
TTCCTTAAACGAAAATTACAAAtagattgataacattttgaAGCTATGAA
GCTCATACCTCGTAAAAACCCATTATAACNCGAAAATTACAAAtagattg
ataacattttgaAGCTATGAAGCTCATACCTCGTAAAAACCcattataat
aattataatttaaatttatgaTCTCTTACATTTGACGGTCAAACACTTGC
AGATGGAATAATTTCGTTAGTAAAATATTTGTACATAAAGGGGAGAAGAC
CTTTAACCTCCGAAGGTCGGGGTGACGGATGCCATTGGTTCGGAGATAAT
GTTTCCTCCAGAATAAACAGCCACTGGGGGTTTTACGCTACACGCTTCGT
CACAAAAATTCAATTGTATTTTATTTGAGCTTATCCAACTTGTAATTTAC
TACTAattttgttaaacattttttttaccacGAGTGTTAATGCAAGCAaa
taccaatgaaaaagtaactttattgttttctatttttctgtTCATTTCGA
AAAGGAAAAATAGTCGAGAAATAAAACTCTCGGAAGAATCCCTAAAGGAA
CTACAATGGTGGGTGAACAACATAACATTGAGCCAGGGAGCTCCAATGAA
ACTGGGGAATCCAGACTTAGTGATCCACACCGATGCCTCGTCGGAAGAAG
GTTGGGGAGCTTCCCTAGAGGGGGGGAGATCAACAGGGGGAGTGTGGACG
AAAGAGGAGAAGGAGAACCACCACATAAACGAGTTAGAACTCATAGCAGC
AGAGTTAGCTCTGAAAACTTTTTTGAAGGACAGGAAGCCCAGGTTAGTAC
ATATATTCATGGACAACATGACAGCATTACACTACCTAATACACAAAGGG
GGGaccaaatcgaaaaaaataacaactATAGCCAAAAGGTATTGGGAATT
TCTCAACGAGAATGGGACCATGATTACTGCGTCCTGGATCCcatcaaaag
aaaacaaaatagcGGATTGGAGGTCAAGACAAAAAGCAAACTCCAGCGAG
TGGGAGCTATCAAACCAAATATTTTGGAAACTAACAAATTTATGGGGATT
ACCGGAAATAGATTGCTTTGCATCAAGGATAATGAGAAAACTACCTCTTT
ACATGTCCCTAAATCCAGACCCAGAGTCGTTAGCAACAAATTCTCTTTAC
CAGAACTGGGGAAAATACCCTTACCTGTTTCCACCCTTTTGCCTAATGGG
CAGGGTTTTAAAGATCATCAAGAAACAATCAACTCCAAAAGCGCTAGTAA
TAGCTCCGCTTTGGCCAGGACAACCTTGGTTTCCAGTGTTGCTATCAATG
TTGATAGCAGAACCTGTCCTGTTACCTCAGAAAAGAAACATACTTCTGAA
TCACATGCAAAAACCACACCCGTTAGTCTTAAACCACACCCTACAACTTG
CGGCGTTTCTAGTATCCGGGAACAGTTACAGAAGCAAGGCTTTTCAGAAT
CAGCTTCCTCAATCATGGTCCAGGCAAGACGCGAAAGCACAACTTGTGCT
TACAAAACGCCTTGGAGAAAGTGGGTTCTGTGGTGTGGCGGGAAACAGGT
GGATCCCTTTGAAGCACCTGTAAACGTGGTAGTTGAGTTTCTCACAGAAC
TTTACCATGAAGGATATGAATACAGAACTATTAATGTGTATCGATCAGCC
ATATCTGCCTATCATCATCCTGTGAACGGGATCAGGGTAGGACAGACTAA
AGAAGTTTGTCTATTGTTGTCTGGGATAGACAATCTAAGACCCCCGACCC
CAAAGTATAATGTAATCTGGGAGGTTGAGGACGTCTTGAACTGTTTGAGA
GACTTAGGAAAGGACCAAGAGTTGACTAATAAGGATTTGACTTTAAAAAC
AGTTATGCTGATGGCCTTAACTGCCATTAAGAGATGTTCAGACCTTCACA
TTTTTGACACAAGATACATGGCAGTTGGAGAAAATAAAATAGTTTTTAAA
CTTAGTCAGAAACCAAAAGGTTTTAGGAAAAAAGGGAAGAGTCCAAAACC
GGTGTGCTTTATTGCGTCAGGGGTTAGACTATGCCCAGTCTCCACCATCA
AAAGTTACATAGACAGAACTAAAGCGTGGAGAGAAGAGAATGGAGAAACA
AGATTTTTTCTCAGTTTTGTCAATCCACATAAGGGTGTCACCTCTAGCAC
TATTGGGAGATGGTTAAAAACAGTCTTAGGTAACGTTGGGGTAGACATCT
CAAAATTTACAGCACATTCTACTAGATCTGCAGCCTCCTCTAAACTCAAG
GTATTGGGAGCCTCAGTGTCGGAAATAATGAATTGTGGGAATTGGAGCAG
TGCTTCAACATGGCAAACTTTTTATCATAAACCTATTCTTAGCAATCTTG
AACAGGCTCAGAAGGAGATGTTAAAATGAGCTTTGAACAAGGAAGGGCAC
TGGCCGAACGCGGCCTTTTGGCCACTTTTCGGATCCCATGGTCGCACCAT
AAAATCTTGCAAGATTTTTTGATGTAAAATTCGAGAATTTTATAAGCGCG
ACGCGAAGCGTCGCGCGAAATGAAATTTAGATTTTACATCAGAAAATCTA
AGAGAATTTATGGTGCCTCGCCCTCCCTCCCTGTTGACATAAATTCTTAT
CATCTGATTCTATCATATTTTTC
Run BLAST on NCBI

transcript from alignment at sc0001592:57679..61585+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037226 ID=TCONS_00037226|Name=TCONS_00037226|organism=Clytia hemisphaerica|type=transcript|length=3907bp|location=Sequence derived from alignment at sc0001592:57679..61585+ (Clytia hemisphaerica)
GAGATGCATGCGCTATTCAGCCTTTATATTCTgttcaaaaaattgagaaa
atcctCGCTCTTGCATTCACTCAAAGAAGTTAACTCATGCAAATTCAAAC
AATTTCGTTTTCTATTTCATGCACTTATCTGGACCAACGATCAACCACCA
AGGAATACAATAGAATATACTAAAAGACGATCGATTACCAAAACAAACGC
CGGTCATTGGAGATTGACGCTCTTATCAACATTCACCACCGACAACTTAT
TATCAAACATGGAATCATGGATGTGTTTTATTAAGTTGATGAATTTGGTA
TTCCTTAAACGAAAATTACAAAtagattgataacattttgaAGCTATGAA
GCTCATACCTCGTAAAAACCCATTATAACNCGAAAATTACAAAtagattg
ataacattttgaAGCTATGAAGCTCATACCTCGTAAAAACCcattataat
aattataatttaaatttatgaTCTCTTACATTTGACGGTCAAACACTTGC
AGATGGAATAATTTCGTTAGTAAAATATTTGTACATAAAGGGGAGAAGAC
CTTTAACCTCCGAAGGTCGGGGTGACGGATGCCATTGGTTCGGAGATAAT
GTTTCCTCCAGAATAAACAGCCACTGGGGGTTTTACGCTACACGCTTCGT
CACAAAAATTCAATTGTATTTTATTTGAGCTTATCCAACTTGTAATTTAC
TACTAattttgttaaacattttttttaccacGAGTGTTAATGCAAGCAaa
taccaatgaaaaagtaactttattgttttctatttttctgtTCATTTCGA
AAAGGAAAAATAGTCGAGAAATAAAACTCTCGGAAGAATCCCTAAAGGAA
CTACAATGGTGGGTGAACAACATAACATTGAGCCAGGGAGCTCCAATGAA
ACTGGGGAATCCAGACTTAGTGATCCACACCGATGCCTCGTCGGAAGAAG
GTTGGGGAGCTTCCCTAGAGGGGGGGAGATCAACAGGGGGAGTGTGGACG
AAAGAGGAGAAGGAGAACCACCACATAAACGAGTTAGAACTCATAGCAGC
AGAGTTAGCTCTGAAAACTTTTTTGAAGGACAGGAAGCCCAGGTTAGTAC
ATATATTCATGGACAACATGACAGCATTACACTACCTAATACACAAAGGG
GGGaccaaatcgaaaaaaataacaactATAGCCAAAAGGATTTGtagtag
gggccactatgtcttcccgtgtgcagaAGCTTGTGCGGAGGgtttttatg
attgaatattgttccttgaatgtagaagatcaaaatttgagaggtggggc
cgggtgtgaccacccgttgccatggaaactgacgtcataggttactatgg
caaccaaaattaaaagtcgtcaaaattgaaaattttttgttcaattcgaa
agagcatgaaaaactgataaagaaaaaggtcacaacctatatctgaaaat
gaatatatcaggagatattgaggaaataaggcaaaatgacgtcataaaac
gatgacgtcatcggaaaataaaaatttgtcaaaattcgaaaatttttggt
tttttggaaagaagaccctccagtgaacataaaatattattacgaaaaag
tctgaaaatcctttttcaGAAGTCTATTAGCCAAAattgagattttaaaa
ttttgcctgTCGAAGGTTGGAGCTTGGGGTACGCACAGCCAGCACATTTA
caggcaaaattttaaaatgtcaattttggctaatagacttcttaaaaagg
attttcagactttttcgtgaTATGATTTTATGTTCACTGGAAGgtcttct
ttccaaaaaaacaaaaattttcgaattttgacaaatttttatttttcgat
gacgtcatcgtttcatgacgtcattttggcttatttccttaatatctcct
gatatattcattttcagatataggttgtgacctttttctttatcagtttt
tcatgctctttgGAATGGAACAAACATTTTTCAATTTTGATGACTTTTTA
TTttggttgccatagtaaccaatgacgtcagtttccatggcaacgggtgg
tcacacccggccccacctctcaaattttgatcttctacattcaaggaaca
atattcaatcataaaatccctttgcacaagctgctgcacacgggaagctt
tttcgcgacatagtggccTTTACTATTGGGAATTTCTCAACGAGAATGGG
ACCATGATTACTGCGTCCTGGATCCcatcaaaagaaaacaaaatagcGGA
TTGGAGGTCAAGACAAAAAGCAAACTCCAGCGAGTGGGAGCTATCAAACC
AAATATTTTGGAAACTAACAAATTTATGGGGATTACCGGAAATAGATTGC
TTTGCATCAAGGATAATGAGAAAACTACCTCTTTACATGTCCCTAAATCC
AGACCCAGAGTCGTTAGCAACAAATTCTCTTTACCAGAACTGGGGAAAAT
ACCCTTACCTGTTTCCACCCTTTTGCCTAATGGGCAGGGTTTTAAAGATC
ATCAAGAAACAATCAACTCCAAAAGCGCTAGTAATAGCTCCGCTTTGGCC
AGGACAACCTTGGTTTCCAGTGTTGCTATCAATGTTGATAGCAGAACCTG
TCCTGTTACCTCAGAAAAGAAACATACTTCTGAATCACATGCAAAAACCA
CACCCGTTAGTCTTAAACCACACCCTACAACTTGCGGCGTTTCTAGTATC
CGGGAACAGTTACAGAAGCAAGGCTTTTCAGAATCAGCTTCCTCAATCAT
GGTCCAGGCAAGACGCGAAAGCACAACTTGTGCTTACAAAACGCCTTGGA
GAAAGTGGGTTCTGTGGTGTGGCGGGAAACAGGTGGATCCCTTTGAAGCA
CCTGTAAACGTGGTAGTTGAGTTTCTCACAGAACTTTACCATGAAGGATA
TGAATACAGAACTATTAATGTGTATCGATCAGCCATATCTGCCTATCATC
ATCCTGTGAACGGGATCAGGGTAGGACAGACTAAAGAAGTTTGTCTATTG
TTGTCTGGGATAGACAATCTAAGACCCCCGACCCCAAAGTATAATGTAAT
CTGGGAGGTTGAGGACGTCTTGAACTGTTTGAGAGACTTAGGAAAGGACC
AAGAGTTGACTAATAAGGATTTGACTTTAAAAACAGTTATGCTGATGGCC
TTAACTGCCATTAAGAGATGTTCAGACCTTCACATTTTTGACACAAGATA
CATGGCAGTTGGAGAAAATAAAATAGTTTTTAAACTTAGTCAGAAACCAA
AAGGTTTTAGGAAAAAAGGGAAGAGTCCAAAACCGGTGTGCTTTATTGCG
TCAGGGGTTAGACTATGCCCAGTCTCCACCATCAAAAGTTACATAGACAG
AACTAAAGCGTGGAGAGAAGAGAATGGAGAAACAAGATTTTTTCTCAGTT
TTGTCAATCCACATAAGGGTGTCACCTCTAGCACTATTGGGAGATGGTTA
AAAACAGTCTTAGGTAACGTTGGGGTAGACATCTCAAAATTTACAGCACA
TTCTACTAGATCTGCAGCCTCCTCTAAACTCAAGGTATTGGGAGCCTCAG
TGTCGGAAATAATGAATTGTGGGAATTGGAGCAGTGCTTCAACATGGCAA
ACTTTTTATCATAAACCTATTCTTAGCAATCTTGAACAGGCTCAGAAGGA
GATGTTAAAATGAGCTTTGAACAAGGAAGGGCACTGGCCGAACGCGGCCT
TTTGGCCACTTTTCGGATCCCATGGTCGCACCATAAAATCTTGCAAGATT
TTTTGATGTAAAATTCGAGAATTTTATAAGCGCGACGCGAAGCGTCGCGC
GAAATGAAATTTAGATTTTACATCAGAAAATCTAAGAGAATTTATGGTGC
CTCGCCCTCCCTCCCTGTTGACATAAATTCTTATCATCTGATTCTATCAT
ATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022030XLOC_022030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037226-exon-sc0001592-1491911889:57679..58867TCONS_00037226-exon-sc0001592-1491911889:57679..58867Clytia hemisphaericaexon
TCONS_00037226-exon-sc0001592-1510915933:57679..58867TCONS_00037226-exon-sc0001592-1510915933:57679..58867Clytia hemisphaericaexon
TCONS_00037226-exon-sc0001592-1575043694:57679..58867TCONS_00037226-exon-sc0001592-1575043694:57679..58867Clytia hemisphaericaexon
TCONS_00037226-exon-sc0001592-1491911889:59852..61585TCONS_00037226-exon-sc0001592-1491911889:59852..61585Clytia hemisphaericaexon
TCONS_00037226-exon-sc0001592-1510915933:59852..61585TCONS_00037226-exon-sc0001592-1510915933:59852..61585Clytia hemisphaericaexon
TCONS_00037226-exon-sc0001592-1575043694:59852..61585TCONS_00037226-exon-sc0001592-1575043694:59852..61585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001592supercontigsc0001592:57679..61585 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194415	0.134402	0.172068	0.156198	0.240084	0.826748	1.11525	0.786355	0.667765	1.48475	0.995731	0.680131	0.986394	1.14608	0.385066	0.459199	1.06747	0.425201	0.333852	0.255175	0.739424	1.22848	0.765896	0.75508	1.22262	0.826255	2.01709	1.75548	0.130044	0.723108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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