TCONS_00037221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037221
Unique NameTCONS_00037221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037221 ID=TCONS_00037221|Name=TCONS_00037221|organism=Clytia hemisphaerica|type=transcript|length=371bp
CAGAAACGAAATGATCTCGAACCTCCTTCAGCACCCATTACACGGAAGAG
AACGACTAGAAGACACAATCTTTTCAAAGCCCGAGCAAAAGTCGTTAACA
GTGCGGGCGAGTCCAGCATTAATGTCAGACCAGGAGACGGATGGTGAAGA
TGCTGGTGCTGGGAAGTACAGAAGATACGTTTCGCGGCGTCCAGAATGGA
GAGCAGGAAGACTCAATGATATTGTTGAACGAATTGacaaagcaatgcaa
cgacaaCGAAACTACGGCAAACCCTCAACCAGACAACCAGACCTCACTAA
AATCTCCAACGAGGTCTTGAGCCCTGAACACAGACACGCTGAAGAAGTAT
TAGAAAATGACGTCAATGCTA
Run BLAST on NCBI

protein sequence of TCONS_00037221-protein

>TCONS_00037221-protein ID=TCONS_00037221-protein|Name=TCONS_00037221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
RNEMISNLLQHPLHGRERLEDTIFSKPEQKSLTVRASPALMSDQETDGED
AGAGKYRRYVSRRPEWRAGRLNDIVERIDKAMQRQRNYGKPSTRQPDLTK
ISNEVLSPEHRHAEEVLENDVNA
Run BLAST on NCBI

transcript from alignment at sc0001591:19207..19922+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037221 ID=TCONS_00037221|Name=TCONS_00037221|organism=Clytia hemisphaerica|type=transcript|length=716bp|location=Sequence derived from alignment at sc0001591:19207..19922+ (Clytia hemisphaerica)
CAGAAACGAAATGATCTCGAACCTCCTTCAGCACCCATTACACGGAAGAG
AACGACTAGAAGACACAATGTGAGTACAAGTATAGTCTTAGTATGACTTT
CCAGTTTGATAAACACCAAAATGAGCAGAGGTCTATTAATCCCAAAATTA
CCAGACAAGGTCATGCTATTCCAGTTATATCGTATGGCTGAATACAACTT
ACCTTAATTGTTTTCAAACACTCCTTTAGGCTTTCATACACCCTTTTTAA
TGCCGCGTATCTTGTATAATTTCAGGGACATTTTTAGGGGTGCTTCTTAC
GGAAAATGTAGATAAAAAGGGCAAAAAGGAGTAAATTTGCTGATTTTCAT
TGATATGCATTAGATGATCCTGATAAGTCTTCACTTTGCTTTGATATTTT
CTAATTTCTTTTAGCTTTTCAAAGCCCGAGCAAAAGTCGTTAACAGTGCG
GGCGAGTCCAGCATTAATGTCAGACCAGGAGACGGATGGTGAAGATGCTG
GTGCTGGGAAGTACAGAAGATACGTTTCGCGGCGTCCAGAATGGAGAGCA
GGAAGACTCAATGATATTGTTGAACGAATTGacaaagcaatgcaacgaca
aCGAAACTACGGCAAACCCTCAACCAGACAACCAGACCTCACTAAAATCT
CCAACGAGGTCTTGAGCCCTGAACACAGACACGCTGAAGAAGTATTAGAA
AATGACGTCAATGCTA

Coding sequence (CDS) from alignment at sc0001591:19207..19922+

>TCONS_00037221 ID=TCONS_00037221|Name=TCONS_00037221|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0001591:19207..19922+ (Clytia hemisphaerica)
AGAAACGAAATGATCTCGAACCTCCTTCAGCACCCATTACACGGAAGAGA
ACGACTAGAAGACACAATCTTTTCAAAGCCCGAGCAAAAGTCGTTAACAG
TGCGGGCGAGTCCAGCATTAATGTCAGACCAGGAGACGGATGGTGAAGAT
GCTGGTGCTGGGAAGTACAGAAGATACGTTTCGCGGCGTCCAGAATGGAG
AGCAGGAAGACTCAATGATATTGTTGAACGAATTGacaaagcaatgcaac
gacaaCGAAACTACGGCAAACCCTCAACCAGACAACCAGACCTCACTAAA
ATCTCCAACGAGGTCTTGAGCCCTGAACACAGACACGCTGAAGAAGTATT
AGAAAATGACGTCAATGCTAGAAACGAAATGATCTCGAACCTCCTTCAGC
ACCCATTACACGGAAGAGAACGACTAGAAGACACAATCTTTTCAAAGCCC
GAGCAAAAGTCGTTAACAGTGCGGGCGAGTCCAGCATTAATGTCAGACCA
GGAGACGGATGGTGAAGATGCTGGTGCTGGGAAGTACAGAAGATACGTTT
CGCGGCGTCCAGAATGGAGAGCAGGAAGACTCAATGATATTGTTGAACGA
ATTGacaaagcaatgcaacgacaaCGAAACTACGGCAAACCCTCAACCAG
ACAACCAGACCTCACTAAAATCTCCAACGAGGTCTTGAGCCCTGAACACA
GACACGCTGAAGAAGTATTAGAAAATGACGTCAATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022025XLOC_022025Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037221-proteinTCONS_00037221-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037221-exon-sc0001591-1491911889:19207..19275TCONS_00037221-exon-sc0001591-1491911889:19207..19275Clytia hemisphaericaexon
TCONS_00037221-exon-sc0001591-1510915933:19207..19275TCONS_00037221-exon-sc0001591-1510915933:19207..19275Clytia hemisphaericaexon
TCONS_00037221-exon-sc0001591-1575043694:19207..19275TCONS_00037221-exon-sc0001591-1575043694:19207..19275Clytia hemisphaericaexon
TCONS_00037221-exon-sc0001591-1491911889:19621..19922TCONS_00037221-exon-sc0001591-1491911889:19621..19922Clytia hemisphaericaexon
TCONS_00037221-exon-sc0001591-1510915933:19621..19922TCONS_00037221-exon-sc0001591-1510915933:19621..19922Clytia hemisphaericaexon
TCONS_00037221-exon-sc0001591-1575043694:19621..19922TCONS_00037221-exon-sc0001591-1575043694:19621..19922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001591supercontigsc0001591:19207..19922 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.733	8.48587	1.04283	0.789	14.1759	13.8298	3.70974	5.58667	14.4321	9.05265	10.0704	12.5154	6.1256	12.705	3.85	4.84971	7.09631	8.8586	1.946	0.974434	5.39352	8.03939	2.86683	8.60453	4.23232	8.43828	1.84551	1.74221	0.972285	0.495302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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