|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037215 ID=TCONS_00037215|Name=TCONS_00037215|organism=Clytia hemisphaerica|type=transcript|length=1542bp
atttgcactcgtccttcggactcgtgcaaattactattttctcctttgtt
actcgtgattaatcgttaattgcactccaaaccatacgattactagtact
aattcaGGTAACACAGTGAAATTTGAAATTCTGGCTCAAAATTTAATCTC
TCTCTCCCTAACTTTAGTAAAGAGGCACGAACATAGTTGACATTCTCCCA
CCAAGGAAGCACCAAGGAAGAATATATACTAAACCATACACAGTCAGCAC
TtttcattttatcaactttctgTTTTAGACTATCCTTGATATTTTATTAA
TTGATTATTCATTGATTTCATCAAATAATTCAAACGCAAGTcaggtaatt
atttttaaagtCATTTCTATTTTGATAACATTGGTAAATAGATTTGTGAA
AAGACACTATTATCTTTTATGgactttttattgttttcaaggggtccacg
gccagccggaTCGGCTATGCATGTTGATCCTAGTAGGTGACTTAAGATAA
AGataaattcacttcaaagattAATGTTATTGAAAAAAGATCTCAAAATC
CATGAACTTATCTGGTGGTATTTCCTCTTATTGAAGCGGTTAATAAAATC
GATAACGAGTATTTTTTCATTACAACCAAAAATCTTTCACCTTGAATTCA
TCTGGTAGGGAAAATTTAACAACCTTCATTGAATGTAAGCTGGTAGTAAT
GGGATTTCTGTTGGTTTCTTGTTGGTCTTGATGGGAATCAGTTTAAAATC
AGGGATTGAAATCAATCAAGGGCATCTTTTGCTTAGCATGCTCAACTGGC
TCATGTTACAAGTTGAATTAAGGAAAGATGAAACATTTCAGGGACGGAGT
GAACTAATTTCTCTAAAATATAGACAGTTTGCAGTTGTTTAGTTGCCTAG
CAACCCAGTCTCCCAAAATTTATTAGCAGATTAGCGTAAAataaaaagtg
accccattttctgTCATTAGGAGAAAATTACCACTTTCGTGACCGCTGTg
caaattttaaacattgaatttcgaataggGACGAATGGCAGTCAATTCCA
AGTGGGGCTGatatttcagggtattttcccaccagggacgaaattttgct
gaattttcCTGTGGGGCTGTGCTCCCAGCGggcctgtgacacaggggtcT
AGTAGATACTGTATGTGGGTTTAAAGGACGTATTATTTGTATCAGACGTG
CCTTAAACTTGTTTGAATTAAAATGTATCAGACTGAGAGATTACATCATG
TAGATATTACCTTGTCAACGACATGTTATATATCATTGTGCCTAACCTGC
AAactgttttcaattttgacttcCCACTGTGGTATGCTTTCTTTGAAATT
GCAGCGAATACAAATTGAGGTGGTGGTAATAAGTAATAACTTTTTCGTTT
TAGAAGGCCTCAGCAGAAAAATCCGAAAGAATGAAAGCAAACTTGTAGTG
TGAACCTTTGTCAATTAATCTCTACTCTAATTTGGATTATTCAATAATtc
tataagaaactctttttgCTCGAGGATGAGAAGAAGCCTAGG Run BLAST on NCBI transcript from alignment at sc0001590:12441..13982 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037215 ID=TCONS_00037215|Name=TCONS_00037215|organism=Clytia hemisphaerica|type=transcript|length=1542bp|location=Sequence derived from alignment at sc0001590:12441..13982 (Clytia hemisphaerica)
CCTAGGCTTCTTCTCATCCTCGAGcaaaaagagtttcttatagaATTATT
GAATAATCCAAATTAGAGTAGAGATTAATTGACAAAGGTTCACACTACAA
GTTTGCTTTCATTCTTTCGGATTTTTCTGCTGAGGCCTTCTAAAACGAAA
AAGTTATTACTTATTACCACCACCTCAATTTGTATTCGCTGCAATTTCAA
AGAAAGCATACCACAGTGGgaagtcaaaattgaaaacagtTTGCAGGTTA
GGCACAATGATATATAACATGTCGTTGACAAGGTAATATCTACATGATGT
AATCTCTCAGTCTGATACATTTTAATTCAAACAAGTTTAAGGCACGTCTG
ATACAAATAATACGTCCTTTAAACCCACATACAGTATCTACTAgacccct
gtgtcacaggccCGCTGGGAGCACAGCCCCACAGgaaaattcagcaaaat
ttcgtccctggtgggaaaataccctgaaatatCAGCCCCACTTGGAATTG
ACTGCCATTCGTCcctattcgaaattcaatgtttaaaatttgcACAGCGG
TCACGAAAGTGGTAATTTTCTCCTAATGAcagaaaatggggtcacttttt
atTTTACGCTAATCTGCTAATAAATTTTGGGAGACTGGGTTGCTAGGCAA
CTAAACAACTGCAAACTGTCTATATTTTAGAGAAATTAGTTCACTCCGTC
CCTGAAATGTTTCATCTTTCCTTAATTCAACTTGTAACATGAGCCAGTTG
AGCATGCTAAGCAAAAGATGCCCTTGATTGATTTCAATCCCTGATTTTAA
ACTGATTCCCATCAAGACCAACAAGAAACCAACAGAAATCCCATTACTAC
CAGCTTACATTCAATGAAGGTTGTTAAATTTTCCCTACCAGATGAATTCA
AGGTGAAAGATTTTTGGTTGTAATGAAAAAATACTCGTTATCGATTTTAT
TAACCGCTTCAATAAGAGGAAATACCACCAGATAAGTTCATGGATTTTGA
GATCTTTTTTCAATAACATTaatctttgaagtgaatttatCTTTATCTTA
AGTCACCTACTAGGATCAACATGCATAGCCGAtccggctggccgtggacc
ccttgaaaacaataaaaagtcCATAAAAGATAATAGTGTCTTTTCACAAA
TCTATTTACCAATGTTATCAAAATAGAAATGactttaaaaataattacct
gACTTGCGTTTGAATTATTTGATGAAATCAATGAATAATCAATTAATAAA
ATATCAAGGATAGTCTAAAAcagaaagttgataaaatgaaaAGTGCTGAC
TGTGTATGGTTTAGTATATATTCTTCCTTGGTGCTTCCTTGGTGGGAGAA
TGTCAACTATGTTCGTGCCTCTTTACTAAAGTTAGGGAGAGAGAGATTAA
ATTTTGAGCCAGAATTTCAAATTTCACTGTGTTACCtgaattagtactag
taatcgtatggtttggagtgcaattaacgattaatcacgagtaacaaagg
agaaaatagtaatttgcacgagtccgaaggacgagtgcaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037215-exon-sc0001590-1491911889:12441..13982 | TCONS_00037215-exon-sc0001590-1491911889:12441..13982 | Clytia hemisphaerica | exon |
| TCONS_00037215-exon-sc0001590-1510915933:12441..13982 | TCONS_00037215-exon-sc0001590-1510915933:12441..13982 | Clytia hemisphaerica | exon |
| TCONS_00037215-exon-sc0001590-1575043694:12441..13982 | TCONS_00037215-exon-sc0001590-1575043694:12441..13982 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001590 | supercontig | sc0001590:12441..13982 . |
Blast
The following BLAST results are available for this feature:
|
