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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037206 ID=TCONS_00037206|Name=TCONS_00037206|organism=Clytia hemisphaerica|type=transcript|length=419bp
ATTTAATTGGCGCAGAAAAAaggatatgtttttttttcgagaaagaaaat
tacaacattttttattgttattgctGGTCGTTGCACCCACAACCACTTCA
AAATGCAGGAAAAAGattccaGTGAATGATCATGGTATTCAACCAACCAC
CATAATCAGTGAAGCCAAAGAATTACAGAAGAACAATTTACTTCTTTTCA
TTCCCATTCTTTCCACTGAATGGAGTGTACAATTACAGTTCAAACTTCTT
TCCGAGCATGCTGGTGGAAATTGGTGTAATCACTGCGTGAAAAGCTGTCT
TCaggaattttccaaatttggaaaatgtcatatttcctgaaatttccata
aaaaaaagtcgtatttcctgaattttcgaaatctgaccttttaatttaca
aaaagatcTGAAAGCTGAT Run BLAST on NCBI protein sequence of TCONS_00037206-protein >TCONS_00037206-protein ID=TCONS_00037206-protein|Name=TCONS_00037206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
FNWRRKKDMFFFRERKLQHFLLLLLVVAPTTTSKCRKKIPVNDHGIQPTT
IISEAKELQKNNLLLFIPILSTEWSVQLQFKLLSEHAGGNWCNHCVKSCL
QEFSKFGKCHIS Run BLAST on NCBI transcript from alignment at sc0001590:80673..81903+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037206 ID=TCONS_00037206|Name=TCONS_00037206|organism=Clytia hemisphaerica|type=transcript|length=1231bp|location=Sequence derived from alignment at sc0001590:80673..81903+ (Clytia hemisphaerica)
ATTTAATTGGCGCAGAAAAAaggatatgtttttttttcgagaaagaaaat
tacaacattttttattgttattgctGGTCGTTGCACCCACAACCACTTCA
AAATGCAGGAAAAAGGTAAGTTACCTTACAAAGTGTGAACAAGGAAgact
caaaaatgaaaattgctcATTgacgaaagttttttttaatagtaGAGTCA
TACCAGAGCCAAACAAttgaagtttatttttctgGTAAAATCTCAGTCTA
TAAGGCGATAAATTATTTCGTTCAAAGACAAAATAGTGTGCaaagagttt
tgattttttttcagattccaGTGAATGATCATGGTATTCAACCAACCACC
ATAATCAGTGAAGGTATGTATTCCTGTTATTTTAAATgtcaaaacctaaa
attttccacttttaTTCGGGACACACAGTATACTTTAGGAGAAAAACCTT
TCGCgagcaaaaactttttgtgatttttgcgaattttcgcgaaagtaaaa
gTCATTGAAAATTCTAAACAAGGATATTTGCAAAGgtttattctcatttt
tatcgTACGATTCGCGAAAAGTTTATGATcgctaaaaacattttttcttt
aaattcgcAAAAGTAAAATGTTGtccattttacaatttttcgatcGCGAA
AGTTATTTCTGCTTGCGAGAGTTTGTGCACCTAAAATAAATGCGATCTCT
AATAAATTTTCCAtgggttttttttgaaaaaattttcattttccaggggg
tatccacaagaaatcttttttgatttgaaaaggtTCGTTACCCCTGACAA
GTGACACATTCTATTATCAAATTTTGCCTGAATAACTCCAGCAGCACACA
ACGCTGTTTTGATGTTTATCTAATGTTAACAACGTCCATAAAACGCGAGT
TGAAcgtgttgaaacaacgttgtgtgccagctggggaccCTCCTCATGTA
CATAACACTTTCAATATATCTTTCAGCCAAAGAATTACAGAAGAACAATT
TACTTCTTTTCATTCCCATTCTTTCCACTGAATGGAGTGTACAATTACAG
TTCAAACTTCTTTCCGAGCATGCTGGTGGAAATTGGTGTAATCACTGCGT
GAAAAGCTGTCTTCaggaattttccaaatttggaaaatgtcatatttcct
gaaatttccataaaaaaaagtcgtatttcctgaattttcgaaatctgacc
ttttaatttacaaaaagatcTGAAAGCTGAT Coding sequence (CDS) from alignment at sc0001590:80673..81903+ >TCONS_00037206 ID=TCONS_00037206|Name=TCONS_00037206|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at sc0001590:80673..81903+ (Clytia hemisphaerica)
TTTAATTGGCGCAGAAAAAaggatatgtttttttttcgagaaagaaaatt
acaacattttttattgttattgctGGTCGTTGCACCCACAACCACTTCAA
AATGCAGGAAAAAGattccaGTGAATGATCATGGTATTCAACCAACCACC
ATAATCAGTGAAGCCAAAGAATTACAGAAGAACAATTTACTTCTTTTCAT
TCCCATTCTTTCCACTGAATGGAGTGTACAATTACAGTTCAAACTTCTTT
CCGAGCATGCTGGTGGAAATTGGTGTAATCACTGCGTGAAAAGCTGTCTT
CaggaattttccaaatttggaaaatgtcatatttcctgaTTTAATTGGCG
CAGAAAAAaggatatgtttttttttcgagaaagaaaattacaacattttt
tattgttattgctGGTCGTTGCACCCACAACCACTTCAAAATGCAGGAAA
AAGattccaGTGAATGATCATGGTATTCAACCAACCACCATAATCAGTGA
AGCCAAAGAATTACAGAAGAACAATTTACTTCTTTTCATTCCCATTCTTT
CCACTGAATGGAGTGTACAATTACAGTTCAAACTTCTTTCCGAGCATGCT
GGTGGAAATTGGTGTAATCACTGCGTGAAAAGCTGTCTTCaggaattttc
caaatttggaaaatgtcatatttcctgaTTTAATTGGCGCAGAAAAAagg
atatgtttttttttcgagaaagaaaattacaacattttttattgttattg
ctGGTCGTTGCACCCACAACCACTTCAAAATGCAGGAAAAAGattccaGT
GAATGATCATGGTATTCAACCAACCACCATAATCAGTGAAGCCAAAGAAT
TACAGAAGAACAATTTACTTCTTTTCATTCCCATTCTTTCCACTGAATGG
AGTGTACAATTACAGTTCAAACTTCTTTCCGAGCATGCTGGTGGAAATTG
GTGTAATCACTGCGTGAAAAGCTGTCTTCaggaattttccaaatttggaa
aatgtcatatttcctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037206-exon-sc0001590-1491911889:80673..80787 | TCONS_00037206-exon-sc0001590-1491911889:80673..80787 | Clytia hemisphaerica | exon |
| TCONS_00037206-exon-sc0001590-1510915933:80673..80787 | TCONS_00037206-exon-sc0001590-1510915933:80673..80787 | Clytia hemisphaerica | exon |
| TCONS_00037206-exon-sc0001590-1575043694:80673..80787 | TCONS_00037206-exon-sc0001590-1575043694:80673..80787 | Clytia hemisphaerica | exon |
| TCONS_00037206-exon-sc0001590-1491911889:80987..81035 | TCONS_00037206-exon-sc0001590-1491911889:80987..81035 | Clytia hemisphaerica | exon |
| TCONS_00037206-exon-sc0001590-1510915933:80987..81035 | TCONS_00037206-exon-sc0001590-1510915933:80987..81035 | Clytia hemisphaerica | exon |
| TCONS_00037206-exon-sc0001590-1575043694:80987..81035 | TCONS_00037206-exon-sc0001590-1575043694:80987..81035 | Clytia hemisphaerica | exon |
| TCONS_00037206-exon-sc0001590-1491911889:81649..81903 | TCONS_00037206-exon-sc0001590-1491911889:81649..81903 | Clytia hemisphaerica | exon |
| TCONS_00037206-exon-sc0001590-1510915933:81649..81903 | TCONS_00037206-exon-sc0001590-1510915933:81649..81903 | Clytia hemisphaerica | exon |
| TCONS_00037206-exon-sc0001590-1575043694:81649..81903 | TCONS_00037206-exon-sc0001590-1575043694:81649..81903 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001590 | supercontig | sc0001590:80673..81903 + |
Blast
The following BLAST results are available for this feature:
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