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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037204 ID=TCONS_00037204|Name=TCONS_00037204|organism=Clytia hemisphaerica|type=transcript|length=1489bp
ttctttatcaacaacaaaataaatccattaaccaaaacaaactcccttaa
gggcaaaggACCTGGTATATGCCGAGCcatatttccattgttttcaaaaa
gctgTTTATCTATAATTTACACTTCTCTACGCAAACGATTTATAAAATCA
TTCTTGAAGTTTTCAACAGAGGAGAATTTGAATGAGCAAAGATGAAGTTC
TGGAAAATCTTTCTACTCTTGGCTTTCATCGCAGCCAtcaaatGCGAATA
TGAAATTTCTGATGAAGAATTTCCATTAGATAATGGTGAAGATTATGTAG
AAGATATGGCTGTACATGGCTCTCAAGATGAAGTTGAAGACCCATTACAT
GGATGCCCTCGTCCTAGAAAGAACAAATGTTCAAAGAAAGTGTCACGAAA
ATGTAGACGTCAAGGAGCAAATATCCAGTGTGGTTTCTACAAAAAGTGCA
AAGTTTGTTCTCGAAGATTTTCACTATTCACGAAATGCCACGTGGCCGAT
AAATGCAGATTGAAAGCTCGCGTGATGCCGTGCAAAATCAATTACTCGGG
TTGCAGAAGACCAAAGCGTTCCTCGTGCAAGAGAGCTGGCAATCGACGAT
ATTGTCTCCTCCGCAGCAAATGTGTCAAAGTTTGCCGTAAGAGATGCAAA
TATGGGAGAAACGGCTGCAAAAGGAACGGCGTCTTTGTCAGACGTCTTAA
GATTTGACTTAATGAAATAATcgacaatttttcaaaacatcattTACAGA
ACACCTTTTGTTTGAATAATTCATTTATAATCTTGGTTTATTGGACCATT
GTAAcaaattttttaagaatataaACGCTCACGCGTTATGAAGttataaa
tgtttttaaataaaatgaagCCTTTCTAGTGGTTAAACATGATGTCAGTC
AGAAAATAAGCCAATTAAACGACGATAATATTCTattataaaattttcat
aacATTTGAACATGGGAGAAAAattacttgcaatatatcttagtggaatg
ttctgggagtTGATATACGATATCTACCTtccattatttcaaaaaagcaa
tctttaaatttttgagactcggaACTTGAATCGTCCATGAAAATGGCAGA
CAAAACAAGCTTTAGTTTTAGGCCATTTTTGGCAATGTTTAGCGGATTGT
TCATTGGAGCATATCTGACTGGGTCTCCGATACTTGGGTGTCTTTAAATA
AGGTCAAGTGGTAAACTTGAAGAGGGGAAAAAAGATCTTTAAGttctgaa
aaaagttaaaatacccaaaattgccaatatgagTGTATGTATTTACTATT
GTTTGAGCCTTTAAGATCTTCAAAAATACGAATGAATATTTAGATTTAGG
CTGGCCTCATCGTGAAAAGTTTGCTCTTCGGAAAACTTGGCTAGTTCAGT
TTTCCTAGTATCgtttattttcatctttctttAAGGCCTTTTATACACGA
GGATGGAATCATAAATTAtaacagatttttaaaaagaag Run BLAST on NCBI transcript from alignment at sc0001590:70448..77949+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037204 ID=TCONS_00037204|Name=TCONS_00037204|organism=Clytia hemisphaerica|type=transcript|length=7502bp|location=Sequence derived from alignment at sc0001590:70448..77949+ (Clytia hemisphaerica)
ttctttatcaacaacaaaataaatccattaaccaaaacaaactcccttaa
gggcaaaggACCTGGTATATGCCGAGCcatatttccattgttttcaaaaa
gctgTTTATCTATAATTTACACTTCTCTACGCAAACGATTTATAAAATCA
TTCTTGAAGTTTTCAACAGAGGAGAATTTGAATGAGCAAAGATGAAGTTC
TGGAAAATCTTTCTACTCTTGGCTTTCATCGCAGCCAtcaaatgtgattt
ttttttatttaattttctattttaatgaccagccgggtcattcatttgag
ggctatgcatgttagcctccactgatatgcaagttacccgatcttaCGGT
ATAGGTTTGGTTTCCATGTTACATTCACATTGTCAAATAACACTGCAAAA
ACGTTATCTGTCTgtaattcattattttattaCATTATTTCTGTTTTTAT
CTAGGCGAATATGAAATTTCTGATGAAGAATTTCCATTAGATAATGGTGA
AGATTATGTAGAAGATATGGCTGTACATGGCTCTCAAGATGAAGGTACTC
CCTATTACCCGCTTTTTTATAACAGCGTGAGGcttaaaattggccaaaac
ctaagaacaaattaagaacaaaaaaTCATTTGCCTCAAATTTCAGAAATC
ACAAGGaatgattttaacagattttaaacccattttaagtttttaagtaa
aATAGAATAAGCGTATTAAGAACACTTTGGGAACATTTAAAATACTTTAG
AACATCCAATACTGACTTGCTTGCTTACTTGCTTAGATGCTCAGGCCTGA
ACAGGCCCCTTGCTCCTCATGACCAGGTCTTTCCAAGCTTGACGGTCCAT
GGCAACTTCTTCTAGTTGAGCCAGTGCAGAACCAGTATCAACATACATTT
GGTCTTTCCATCTCTTTGGAGGTCTTCCACGCGGTCTGGGGTTTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCATTGTTGATTTGAATGGGTACTGGCGAG
TCACTGATGGTTTTGCATTTAGATGCGTTGATCTTCATTCCCCATTTGGA
ACAAGCGGTCTCAAGTTCAGCTGTcgatatttccaatttttcaaagattg
cgGTCACAAGTGTAGTGTCATCAGCATACCTTAGCTCCGTGGACATATTT
TCTTTTAGTTCAAGGTGGTCATCGAGACTCTTCAGCTCATCCATAACGAA
TTCCAGGAATATGTTAAATAGGACTGGAGATAGCAGACAGCCTTGTCGTA
CACCAACCTTGACCTTGAACCAATTGGTGATTTGTTTGTTAACAACTACA
GCACATTCAGCATTTGAGTAGATGCTTTCAATGATATCAACGATACGTGG
GTCAATACCAATCGCACGCATCATTTTCCATAATGCTTCCCGCCAGATGG
TATCGAATGCTGCCTTGAAATCAATGAAGTGAAGGTGTACTTTGACGTTC
CTCTCCCTAGCTTTCTCCAAAATTTGGCGGACAATGAAGATTGCATCGAC
TGTTCCTCTGTTTTTACGGAAACCAAACTGTGAAGGGCGAAGAAAAGATT
CGGTTCTTTCTGTCATTCTCTTGAGGAGTATTCGCAGGAAGACTTTGCTA
GGTATCGATATCAATGAAATGGCTCGGTAGTTTTCTGGATTTGACTTACT
TCCTTTCTTATGTACTGGGTTTATAAGGGATTTAGACCAGTCTTTCGGTG
AGATGGTATCTCTTTCGACTTTTGTGAATATGGCATGGAGCATTCGGACC
ATTGGTTCACCACCAGCGATCAGGACCTCGGCAGTGATCTCGTCAACTCC
CGGGGCTttccttttcttcattttctttacaGTTTTTCTTACATCCTCTA
TCGATATCGCTGGGAATGACTCATTCTCGGCTGGGTTAGAGATTTCATTG
ATGGCATCATCTTTGTGCGGAAATTCCTTGTTCAGGTGTGCTTTGAAATG
GTCTTCCCATACTTTCAAGAGTTGAGCTGGGTCGGTGTGCTTTATGCCGT
TTTTATCTTGCATCAGGTTAGGATTAGCACTGCGTTTGTCTTCCAATTCT
CTGACTGTTTTAAAAATGTTGAACGAGTTATTACGCTGAAAGTCATTTTC
CAtttgaacaacttttttctcaagattttcttTCTTATGTTTGTTGATGG
ATTTCTTTACGTCTTTATTAAGTTCTCTATATCTTGCTACGTTTACGGCA
TTACCATCTTTCAGCAAGGCTAAACGGGCCTTGCGTCTTTCCTCGCACGC
TTTTTCAACTTCTTGTTGGGAGACCATCAACTTTTCTGTGCTTAACCCGT
CCGATCAGTTCTTCAGTTGCTTCATTGGTGACTTGCTTGAACTCATTATA
GACGGTGTCAATATCGTTTGTTTCAACAAGCTGAAGTAAGGGTTCNCATT
ATAGACGGTGTCAAGACGGTGTCAAGACGGTGTCATTATAGACGGTGTCA
ATAGTCACACGATTCTTCTTGGTGATTTCAATGCTATAGTTGGAAAAGAC
CAACACGAAAACTTCAGTGATAATGTTGGCTATTTTGGTTTAGGAGTCAG
CAATGAGCGTGGCTGGAAACTACTAGAGTTTTGTGCTATCAATAATCTTG
TCATTACCAACACGTTATTCAAACACCCGGAAAAACGCCGATTTACCTGG
GTCTCACCGAACGGAACCCACAAAAACCAGCTAGACTATATTATTACCGA
TATTCGCATCAAAAGGAGAAATTGAAAGACCCTGACGTGCTCCATGCTTT
CCAACAAAGAATCGGCGGATACTTCGAACCCTTACTTCAGCTTGTTGAAA
CAAACGATATTGACACCGTCTATAATGAGTTCAAGCAAGTCACCAATGAA
GCAACTGAAGAACTGATCGGACGGGTTAAGCACAGAAAAGTTGATGGTCT
CCCACAAGAAGTTGAAAAAGCGTGCGAGGAAAGACGCAAGGCCCGTTTAG
CCTTGCTGAAAGATGGTAATGCCGTAAACNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAATACTGACTGATTCTTACTAAAAAAGCGTGTG
tctcaattttaaaagattCCTCTTGAAATCGATtctccaattccccttga
aatcGATTTAGAGAACGTCGACTGTATCCTGACCTCATTGATTGATAAAA
ACACAGTGAAGTCTCCAAATCGGAACCGctcggggaacacaaatttgttc
gaaagGTTATAGGGTGAGGTTCGTAAgacattaccgagtttatgtattcg
agataaatcgagtgggacagtataaagcaaagttgacatgccTCCAAAAT
CACTGTCcgctttgctcgacgacggtaaaaacaccaaaatactgtCGTCT
GTTTAAGTGAGCAAaagcgatatagagccgtacatcgaATATCgattttg
ttttgtatcgatttcacttaccgtcgccctcgatatcctccgatacatga
ACTCGGTAGGGTGAGTTTCGTAAGACATTATTAGAGACAAGAAAACAGAC
ATTTGGAGAGACAGACGAGGTTCGATAAAAGTGATTCTACTGTGATTTAT
TGCTTTTTGCTTTTAGTTGAAGACCCATTACATGGATGCCCCCGTCCTAG
AAAGAACAAATGTTCAAAGAAAGTTTCACGAAAATGTAGACGTCGAGGAC
CAAATATCCAGTGTGGTTTCTACAAAAAGTAAGCCTTTTTCCTCCTGAAT
TATAGAAATATGGTACTGGTCTTTGAGGTTGGCAACATTGCTTTGGCCCC
TTCTTTAGGGAGTGGGGTAGTGGAATTTGAGAATGAGGATCGTTGTTTTT
TACCACAAAGACtcgaaaaatagaatttttttcaaactacaaatttttga
cttttcgaaagagaacaatagaatataTATTGTATGAGTAGTTAAAATCT
AGACTGAAATCTTATAATACCTTATTTTTTGATACAGGTGCAAAGTTTGT
TCTCGAAGATTTTCACTATTCACGAAATGCCACGTGGCCGATAAATGCAG
ATTGAAAGCTCGCGTGATGCCGTGCAAAATCACTTACTCGGGCTGTGGAA
GACCAAAGCGTTCCTCGTGCAAGAGAGCTGGCAATCGACGATATTGTCTC
CTCCGCAGCAAATGTGTCAAAGTTTGCCGTAAGAGATGCAAATATGGGAG
AAACGGCTGCAAAAGGAACGGCGTCTTTGTCAGACGTAAGATTTGACTTA
ATGAAATAATcgacaatttttcaaaacatcattTACAGAACAACTTTTGT
TTCAATAATTCATATAGAATCTTGGTTTATTGGACTAatgtaacaaaatt
tttaagaatagaAACATTCACGCGTTATGAAGttataaatgtttttaaat
aaaatgaagCCTTTCTAGTGGTTAAACATGATGTCAGTCAGAAAATAAGC
AAATTAAACGACGATTATattctattttaaaattttcataacatTAGAAC
ATGGGAGAAAAattacttgcaatatatcttagtggaatgttctgggagtT
GATATACGTTGATATACCTtccattatttcaaaaaagcaatctttaaatt
tttgagactcggaattttcttttcaacgaTTGAAAACAGACATTTGGAGA
GACAGATGATGTTCGATAAAAGTGATTCTACTGTGATTTATTGCTTTCTT
CTTTTAGTTGAAGACCCATTACATGGATGCCCTCGTCCTAGAAAGAACAA
ATGTTCAAAGAAAGTGTCACGAAAATGTAGACGTCAAGGAGCAAATATCC
AGTGTGGTTTCTACAAAAAGTAAGCCTTTTTCCTGAATTATAGAAATATG
GTACTGGTCTTTGAGGTTGGCAACATTGCTTTGGCCCCTTCTTTAGGGAG
TGGGGTAGTGGAATTTGAGAATGAGGATCGTTGTTTTTTACCACAAAGAC
tcgaaaaatagaatttttttcaNTGAGGATCGTTGTTTTTTACCACAAAG
ACtcgaaaaatagaatttttttcaaactacaaatttttgacttttcgaaa
gaaaacaatagaatttatattGTATGAGTAGTTAAAATCTAGACTGAAAT
CTTATAATACCTTATTTTTTGATACAGGTGCAAAGTTTGTTCTCGAAGAT
TTTCACTATTCACGAAATGCCACGTGGCCGATAAATGCAGATTGAAAGCT
CGCGTGATGCCGTGCAAAATCAATTACTCGGGTTGCAGAAGACCAAAGCG
TTCCTCGTGCAAGAGAGCTGGCAATCGACGATATTGTCTCCTCCGCAGCA
AATGTGTCAAAGTTTGCCGTAAGAGATGCAAATATGGGAGAAACGGCTGC
AAAAGGAACGGCGTCTTTGTCAGACGTCTTAAGATTTGACTTAATGAAAT
AATcgacaatttttcaaaacatcattTACAGAACACCTTTTGTTTGAATA
ATTCATTTATAATCTTGGTTTATTGGACCATTGTAAcaaattttttaaga
atataaACGCTCACGCGTTATGAAGttataaatgtttttaaataaaatga
agCCTTTCTAGTGGTTAAACATGATGTCAGTCAGAAAATAAGCCAATTAA
ACGACGATAATATTCTattataaaattttcataacATTTGAACATGGGAG
AAAAattacttgcaatatatcttagtggaatgttctgggagtTGATATAC
GATATCTACCTtccattatttcaaaaaagcaatctttaaatttttgagac
tcggaattttcttttcaacgCTGTATAGCTTATAACACTTGAATCGTCCA
TGAAAATGGCAGACAAAACAAGCTTTAGTTTTAGGCCATTTTTGGCAATG
TTTAGCGGATTGTTCATTGGAGCATATCTGACTGGGTCTCCGATACTTGG
GTGTCTTTAAATAAGGTCAAGTGGTAAACTTGAAGAGGGGAAAAAAGATC
TTTAAGttctgaaaaaagttaaaatacccaaaattgccaatatgagTGTA
TGTATTTACTATTGTTTGAGCCTTTAAGATCTTCAAAAATACGAATGAAT
ATTTAGATTTAGGCTGGCCTCATCGTGAAAAGTTTGCTCTTCGGAAAACT
TGGCTAGTTCAGTTTTCCTAGTATCgtttattttcatctttctttAAGGC
CTTTTATACACGAGGATGGAATCATAAATTAtaacagatttttaaaaaga
ag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037204-exon-sc0001590-1491911889:70448..70690 | TCONS_00037204-exon-sc0001590-1491911889:70448..70690 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1510915933:70448..70690 | TCONS_00037204-exon-sc0001590-1510915933:70448..70690 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1575043694:70448..70690 | TCONS_00037204-exon-sc0001590-1575043694:70448..70690 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1491911889:70902..70991 | TCONS_00037204-exon-sc0001590-1491911889:70902..70991 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1510915933:70902..70991 | TCONS_00037204-exon-sc0001590-1510915933:70902..70991 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1575043694:70902..70991 | TCONS_00037204-exon-sc0001590-1575043694:70902..70991 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1491911889:76455..76566 | TCONS_00037204-exon-sc0001590-1491911889:76455..76566 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1510915933:76455..76566 | TCONS_00037204-exon-sc0001590-1510915933:76455..76566 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1575043694:76455..76566 | TCONS_00037204-exon-sc0001590-1575043694:76455..76566 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1491911889:76875..77502 | TCONS_00037204-exon-sc0001590-1491911889:76875..77502 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1510915933:76875..77502 | TCONS_00037204-exon-sc0001590-1510915933:76875..77502 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1575043694:76875..77502 | TCONS_00037204-exon-sc0001590-1575043694:76875..77502 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1491911889:77534..77949 | TCONS_00037204-exon-sc0001590-1491911889:77534..77949 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1510915933:77534..77949 | TCONS_00037204-exon-sc0001590-1510915933:77534..77949 | Clytia hemisphaerica | exon |
| TCONS_00037204-exon-sc0001590-1575043694:77534..77949 | TCONS_00037204-exon-sc0001590-1575043694:77534..77949 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001590 | supercontig | sc0001590:70448..77949 + |
Blast
The following BLAST results are available for this feature:
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