XLOC_022009 (gene) - C. hemisphaerica

Overview
NameXLOC_022009
Unique NameXLOC_022009
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001590:68605..77949+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_022009 ID=XLOC_022009|Name=XLOC_022009|organism=Clytia hemisphaerica|type=gene|length=9345bp|location=Sequence derived from alignment at sc0001590:68605..77949+ (Clytia hemisphaerica)
TGTCACCACCATCGAAATCATGTACGTATTTTTTACTCATTTGAAATGAA
TTGGAACTTTTCAAATCTTAATGGAACTTCTCCTCGTTACGTCCTTTGTC
TTATGAGGTTCCCAAACCTACCTCTTGTAACAATGACAATATTGAGGGGA
AGATCGATTGTGTTCGTAAAAGTGATTTAGAGCTTTTGTTTCGTTTATGT
TATGAATTGTTATCGACAAAGGGAGTGTTAATCGATTCTTTTCTAAAGAT
GTAAACCCACCCTAGCTCATAAGTATTAAATCAATTAATTTAGGTAGTTA
TgggcgcgttcacactggaaGATTTCCTTAGTAAAACTGTAGTTATAAAA
CCTTTGATTTATGTTTTACAATAGAAGCGTGCATGCAACAAACAGTTAAC
TGCATTGCTTTGTcactttcatttgatttttctaaattaaaagTCACAAG
CTCTTTTGTCTTAAAGGTAGGGTAGGATCaacctttaaaacaaaagattt
tatcaagGAAGCATAAACCATGCATAAACCAAGGTGCAATGAACAacatg
ggccccggcgagccattttgagtaaaggggccaacattttggaaaaaaat
gtcgcccaccatggttaagcgacgaagaaaatttttcactttttacaccc
tcaaaacaccttaaaacgatatctaattgggaagaataatagtttttgtg
gtttgatttggtctcaaaccagtTTAAAATAGTAACTTTTAAAAACGTAT
GACATTATCTACCCCCCTGGTTAACGGGGCCGACGAACAAAAAGCTTTGC
GATGTCAAAACACGAATGAACTGAGGAAAAATATAGAAGCAGTGCAAAAA
GGGTTGTTGATTTGTAATGACGAATGCagttacccagctggcacacaacg
ttgtttcaacgttcatctaacattcacaacgtccatataaagttagatga
acgttgaaacaacgttgtgtgacaGCTGGGTATTGGGTACAACGATTACA
ACAAATATGTTTACGGATTTAAAGGGATGTATGAAtatcaatatcaacca
atcacaggcAATATCGGAACTCTCAATAAAAAAGAggccttaagcaaaat
caataaCATGTTATTATAATAGATCTCGTCAACATACAAAGAACAGTAAA
AATCCAGTGTATTCATCCctcataaatctctttgttaaatttttatGGAT
TTAATTATGGAAACCTTCCAGTGTAAACGCGCCCTATGTGatcaaaaaaa
tatacaaaaggaAATATAAGTGGAGGGAAATCAAAAAAGACGTGAGGGAT
TGATgttaaaattatgtaaattacGGCTAATCAATTACAGTAATTAACAA
TTTTGGGATGGATTGGGATAGAAAACCAGCTTCTCTGATTACCCAAAGTG
CTATTGAAAACAATTTGTTTTATCTAAGTTATATATACGGCCCGTCCTAA
AAATAGGCTTGTTTCTATATGCTAGTGTCATGAAAATGGATTTACgcttt
tttgcttttgaaagATTGTTATTCAAACTTTCAGTGTGAAATGACAAATT
TTCCACTATTTTGTTGCCTGGAAAATTCTCATCACAATGATACTTAATTG
TTTCGAGAAAGTTTGGTCGAGCTTTGGGAAAAGCAGATTTAATTTCTTAC
TTTCTTTCATTCAGGCGTTTTATCTAATGATGCATTATATCATTAGAATt
tctaggaaattctgagcaagaaaaatATAGTTATCTTTTGGTCTGAACGA
AGTGTTCCCAAAATAAAAGCCCCTAATTTTATGCATAATTagattcaaaa
taaaagaatcaCGTCACACCACGCTAATTATGTATaagtatttttcttta
tcaacaacaaaataaatccattaaccaaaacaaactcccttaagggcaaa
ggACCTGGTATATGCCGAGCcatatttccattgttttcaaaaagctgTTT
ATCTATAATTTACACTTCTCTACGCAAACGATTTATAAAATCATTCTTGA
AGTTTTCAACAGAGGAGAATTTGAATGAGCAAAGATGAAGTTCTGGAAAA
TCTTTCTACTCTTGGCTTTCATCGCAGCCAtcaaatgtgattttttttta
tttaattttctattttaatgaccagccgggtcattcatttgagggctatg
catgttagcctccactgatatgcaagttacccgatcttaCGGTATAGGTT
TGGTTTCCATGTTACATTCACATTGTCAAATAACACTGCAAAAACGTTAT
CTGTCTgtaattcattattttattaCATTATTTCTGTTTTTATCTAGGCG
AATATGAAATTTCTGATGAAGAATTTCCATTAGATAATGGTGAAGATTAT
GTAGAAGATATGGCTGTACATGGCTCTCAAGATGAAGGTACTCCCTATTA
CCCGCTTTTTTATAACAGCGTGAGGcttaaaattggccaaaacctaagaa
caaattaagaacaaaaaaTCATTTGCCTCAAATTTCAGAAATCACAAGGa
atgattttaacagattttaaacccattttaagtttttaagtaaaATAGAA
TAAGCGTATTAAGAACACTTTGGGAACATTTAAAATACTTTAGAACATCC
AATACTGACTTGCTTGCTTACTTGCTTAGATGCTCAGGCCTGAACAGGCC
CCTTGCTCCTCATGACCAGGTCTTTCCAAGCTTGACGGTCCATGGCAACT
TCTTCTAGTTGAGCCAGTGCAGAACCAGTATCAACATACATTTGGTCTTT
CCATCTCTTTGGAGGTCTTCCACGCGGTCTGGGGTTTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCATTGTTGATTTGAATGGGTACTGGCGAGTCACTGA
TGGTTTTGCATTTAGATGCGTTGATCTTCATTCCCCATTTGGAACAAGCG
GTCTCAAGTTCAGCTGTcgatatttccaatttttcaaagattgcgGTCAC
AAGTGTAGTGTCATCAGCATACCTTAGCTCCGTGGACATATTTTCTTTTA
GTTCAAGGTGGTCATCGAGACTCTTCAGCTCATCCATAACGAATTCCAGG
AATATGTTAAATAGGACTGGAGATAGCAGACAGCCTTGTCGTACACCAAC
CTTGACCTTGAACCAATTGGTGATTTGTTTGTTAACAACTACAGCACATT
CAGCATTTGAGTAGATGCTTTCAATGATATCAACGATACGTGGGTCAATA
CCAATCGCACGCATCATTTTCCATAATGCTTCCCGCCAGATGGTATCGAA
TGCTGCCTTGAAATCAATGAAGTGAAGGTGTACTTTGACGTTCCTCTCCC
TAGCTTTCTCCAAAATTTGGCGGACAATGAAGATTGCATCGACTGTTCCT
CTGTTTTTACGGAAACCAAACTGTGAAGGGCGAAGAAAAGATTCGGTTCT
TTCTGTCATTCTCTTGAGGAGTATTCGCAGGAAGACTTTGCTAGGTATCG
ATATCAATGAAATGGCTCGGTAGTTTTCTGGATTTGACTTACTTCCTTTC
TTATGTACTGGGTTTATAAGGGATTTAGACCAGTCTTTCGGTGAGATGGT
ATCTCTTTCGACTTTTGTGAATATGGCATGGAGCATTCGGACCATTGGTT
CACCACCAGCGATCAGGACCTCGGCAGTGATCTCGTCAACTCCCGGGGCT
ttccttttcttcattttctttacaGTTTTTCTTACATCCTCTATCGATAT
CGCTGGGAATGACTCATTCTCGGCTGGGTTAGAGATTTCATTGATGGCAT
CATCTTTGTGCGGAAATTCCTTGTTCAGGTGTGCTTTGAAATGGTCTTCC
CATACTTTCAAGAGTTGAGCTGGGTCGGTGTGCTTTATGCCGTTTTTATC
TTGCATCAGGTTAGGATTAGCACTGCGTTTGTCTTCCAATTCTCTGACTG
TTTTAAAAATGTTGAACGAGTTATTACGCTGAAAGTCATTTTCCAtttga
acaacttttttctcaagattttcttTCTTATGTTTGTTGATGGATTTCTT
TACGTCTTTATTAAGTTCTCTATATCTTGCTACGTTTACGGCATTACCAT
CTTTCAGCAAGGCTAAACGGGCCTTGCGTCTTTCCTCGCACGCTTTTTCA
ACTTCTTGTTGGGAGACCATCAACTTTTCTGTGCTTAACCCGTCCGATCA
GTTCTTCAGTTGCTTCATTGGTGACTTGCTTGAACTCATTATAGACGGTG
TCAATATCGTTTGTTTCAACAAGCTGAAGTAAGGGTTCNCATTATAGACG
GTGTCAAGACGGTGTCAAGACGGTGTCATTATAGACGGTGTCAATAGTCA
CACGATTCTTCTTGGTGATTTCAATGCTATAGTTGGAAAAGACCAACACG
AAAACTTCAGTGATAATGTTGGCTATTTTGGTTTAGGAGTCAGCAATGAG
CGTGGCTGGAAACTACTAGAGTTTTGTGCTATCAATAATCTTGTCATTAC
CAACACGTTATTCAAACACCCGGAAAAACGCCGATTTACCTGGGTCTCAC
CGAACGGAACCCACAAAAACCAGCTAGACTATATTATTACCGATATTCGC
ATCAAAAGGAGAAATTGAAAGACCCTGACGTGCTCCATGCTTTCCAACAA
AGAATCGGCGGATACTTCGAACCCTTACTTCAGCTTGTTGAAACAAACGA
TATTGACACCGTCTATAATGAGTTCAAGCAAGTCACCAATGAAGCAACTG
AAGAACTGATCGGACGGGTTAAGCACAGAAAAGTTGATGGTCTCCCACAA
GAAGTTGAAAAAGCGTGCGAGGAAAGACGCAAGGCCCGTTTAGCCTTGCT
GAAAGATGGTAATGCCGTAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAATACTGACTGATTCTTACTAAAAAAGCGTGTGtctcaat
tttaaaagattCCTCTTGAAATCGATtctccaattccccttgaaatcGAT
TTAGAGAACGTCGACTGTATCCTGACCTCATTGATTGATAAAAACACAGT
GAAGTCTCCAAATCGGAACCGctcggggaacacaaatttgttcgaaagGT
TATAGGGTGAGGTTCGTAAgacattaccgagtttatgtattcgagataaa
tcgagtgggacagtataaagcaaagttgacatgccTCCAAAATCACTGTC
cgctttgctcgacgacggtaaaaacaccaaaatactgtCGTCTGTTTAAG
TGAGCAAaagcgatatagagccgtacatcgaATATCgattttgttttgta
tcgatttcacttaccgtcgccctcgatatcctccgatacatgaACTCGGT
AGGGTGAGTTTCGTAAGACATTATTAGAGACAAGAAAACAGACATTTGGA
GAGACAGACGAGGTTCGATAAAAGTGATTCTACTGTGATTTATTGCTTTT
TGCTTTTAGTTGAAGACCCATTACATGGATGCCCCCGTCCTAGAAAGAAC
AAATGTTCAAAGAAAGTTTCACGAAAATGTAGACGTCGAGGACCAAATAT
CCAGTGTGGTTTCTACAAAAAGTAAGCCTTTTTCCTCCTGAATTATAGAA
ATATGGTACTGGTCTTTGAGGTTGGCAACATTGCTTTGGCCCCTTCTTTA
GGGAGTGGGGTAGTGGAATTTGAGAATGAGGATCGTTGTTTTTTACCACA
AAGACtcgaaaaatagaatttttttcaaactacaaatttttgacttttcg
aaagagaacaatagaatataTATTGTATGAGTAGTTAAAATCTAGACTGA
AATCTTATAATACCTTATTTTTTGATACAGGTGCAAAGTTTGTTCTCGAA
GATTTTCACTATTCACGAAATGCCACGTGGCCGATAAATGCAGATTGAAA
GCTCGCGTGATGCCGTGCAAAATCACTTACTCGGGCTGTGGAAGACCAAA
GCGTTCCTCGTGCAAGAGAGCTGGCAATCGACGATATTGTCTCCTCCGCA
GCAAATGTGTCAAAGTTTGCCGTAAGAGATGCAAATATGGGAGAAACGGC
TGCAAAAGGAACGGCGTCTTTGTCAGACGTAAGATTTGACTTAATGAAAT
AATcgacaatttttcaaaacatcattTACAGAACAACTTTTGTTTCAATA
ATTCATATAGAATCTTGGTTTATTGGACTAatgtaacaaaatttttaaga
atagaAACATTCACGCGTTATGAAGttataaatgtttttaaataaaatga
agCCTTTCTAGTGGTTAAACATGATGTCAGTCAGAAAATAAGCAAATTAA
ACGACGATTATattctattttaaaattttcataacatTAGAACATGGGAG
AAAAattacttgcaatatatcttagtggaatgttctgggagtTGATATAC
GTTGATATACCTtccattatttcaaaaaagcaatctttaaatttttgaga
ctcggaattttcttttcaacgaTTGAAAACAGACATTTGGAGAGACAGAT
GATGTTCGATAAAAGTGATTCTACTGTGATTTATTGCTTTCTTCTTTTAG
TTGAAGACCCATTACATGGATGCCCTCGTCCTAGAAAGAACAAATGTTCA
AAGAAAGTGTCACGAAAATGTAGACGTCAAGGAGCAAATATCCAGTGTGG
TTTCTACAAAAAGTAAGCCTTTTTCCTGAATTATAGAAATATGGTACTGG
TCTTTGAGGTTGGCAACATTGCTTTGGCCCCTTCTTTAGGGAGTGGGGTA
GTGGAATTTGAGAATGAGGATCGTTGTTTTTTACCACAAAGACtcgaaaa
atagaatttttttcaNTGAGGATCGTTGTTTTTTACCACAAAGACtcgaa
aaatagaatttttttcaaactacaaatttttgacttttcgaaagaaaaca
atagaatttatattGTATGAGTAGTTAAAATCTAGACTGAAATCTTATAA
TACCTTATTTTTTGATACAGGTGCAAAGTTTGTTCTCGAAGATTTTCACT
ATTCACGAAATGCCACGTGGCCGATAAATGCAGATTGAAAGCTCGCGTGA
TGCCGTGCAAAATCAATTACTCGGGTTGCAGAAGACCAAAGCGTTCCTCG
TGCAAGAGAGCTGGCAATCGACGATATTGTCTCCTCCGCAGCAAATGTGT
CAAAGTTTGCCGTAAGAGATGCAAATATGGGAGAAACGGCTGCAAAAGGA
ACGGCGTCTTTGTCAGACGTCTTAAGATTTGACTTAATGAAATAATcgac
aatttttcaaaacatcattTACAGAACACCTTTTGTTTGAATAATTCATT
TATAATCTTGGTTTATTGGACCATTGTAAcaaattttttaagaatataaA
CGCTCACGCGTTATGAAGttataaatgtttttaaataaaatgaagCCTTT
CTAGTGGTTAAACATGATGTCAGTCAGAAAATAAGCCAATTAAACGACGA
TAATATTCTattataaaattttcataacATTTGAACATGGGAGAAAAatt
acttgcaatatatcttagtggaatgttctgggagtTGATATACGATATCT
ACCTtccattatttcaaaaaagcaatctttaaatttttgagactcggaat
tttcttttcaacgCTGTATAGCTTATAACACTTGAATCGTCCATGAAAAT
GGCAGACAAAACAAGCTTTAGTTTTAGGCCATTTTTGGCAATGTTTAGCG
GATTGTTCATTGGAGCATATCTGACTGGGTCTCCGATACTTGGGTGTCTT
TAAATAAGGTCAAGTGGTAAACTTGAAGAGGGGAAAAAAGATCTTTAAGt
tctgaaaaaagttaaaatacccaaaattgccaatatgagTGTATGTATTT
ACTATTGTTTGAGCCTTTAAGATCTTCAAAAATACGAATGAATATTTAGA
TTTAGGCTGGCCTCATCGTGAAAAGTTTGCTCTTCGGAAAACTTGGCTAG
TTCAGTTTTCCTAGTATCgtttattttcatctttctttAAGGCCTTTTAT
ACACGAGGATGGAATCATAAATTAtaacagatttttaaaaagaag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00037201TCONS_00037201Clytia hemisphaericatranscript
TCONS_00037202TCONS_00037202Clytia hemisphaericatranscript
TCONS_00037203TCONS_00037203Clytia hemisphaericatranscript
TCONS_00037204TCONS_00037204Clytia hemisphaericatranscript
TCONS_00037205TCONS_00037205Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00037205-proteinTCONS_00037205-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001590supercontigsc0001590:68605..77949 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.39	52.33	32.34	24.66	81.42	65.83	22.56	21.19	6.54	14.04	2.54	4.54	0.85	1.8	0.01	0	1.16	0.55	0.35	0.28	3.45	2.65	8.27	9.28	2.43	2.67	0.96	1.44	1.19	1.57