TCONS_00037199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037199
Unique NameTCONS_00037199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length908

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037199 ID=TCONS_00037199|Name=TCONS_00037199|organism=Clytia hemisphaerica|type=transcript|length=908bp
CGAATATAATCGGTTTTTTAAAACAAGCATCGAATACCAAAAGGAAACGC
CAGTCAACTATTACATCTTTCCTGGCACCTGGACAAAATCAAGTTGATGA
CTCTGTGGTATATCTAAGAAGTAAAGCAGCAGCACCCCCACCGAGTAAAA
AGCGTGTCGGACGACCACCAAATTCACTTACAGATGACCAAATCAATCGA
ATGCTGGAAAGGAATCATGACTACAACGATCTCTTACGAAAAGCCACGTA
TTTTGATTCAGTTATCATCAACTTTTACTTAAACCCTGACAGCGTGAAGA
ATGCCAACGAAATTGAACACTCCACCAGAAAACGTTACACCGAGAAAACA
AAAAGGGAAATGAGAGAACACTACCTACTCACGCAAAACTTTGTGGCTTC
TGCCAAAGCTTTTAATGTTAACGAATCCACCCTTCGTAATATTGTGAAAA
CCCTCCCTAGAAACGTTAAACCGATTGACAAAGGAAACCGTTCAGGAGCT
GGTAGGCCATTAACATACCCCTTAGAAGTTGAAAATGATCTTGTATGCTG
GATTCTCAAGCTAAGAGATATGCATTTTCCAGTATCTGTGCTCGCTTTAC
AGGAGAAGGGAAGAAGTGTTATCTGCCCTCACAATCCCACATTCAATGCT
AGTCGTGGTTGGGTCCAAAAGTTTTTCGCAAGGCATCGACTATCCCTACG
CAGCCGAACATCTGTCAGCCAAAAGCTTCCCCAGCAACTAGAATCTTCTA
TCACTAAGTTCTATCTTGATGCTGGTCGCTACATGAGGATCGGTAAATAT
CCCTTGTCACTTGTTGGGAACATGGACGAAACACCGGCATTTTTTGATAT
GGTACCAGCTAAAAGCATCACTAAAACCGGTACCAAAGAATGTGTGGTGA
GAACATCA
Run BLAST on NCBI

protein sequence of TCONS_00037199-protein

>TCONS_00037199-protein ID=TCONS_00037199-protein|Name=TCONS_00037199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
NIIGFLKQASNTKRKRQSTITSFLAPGQNQVDDSVVYLRSKAAAPPPSKK
RVGRPPNSLTDDQINRMLERNHDYNDLLRKATYFDSVIINFYLNPDSVKN
ANEIEHSTRKRYTEKTKREMREHYLLTQNFVASAKAFNVNESTLRNIVKT
LPRNVKPIDKGNRSGAGRPLTYPLEVENDLVCWILKLRDMHFPVSVLALQ
EKGRSVICPHNPTFNASRGWVQKFFARHRLSLRSRTSVSQKLPQQLESSI
TKFYLDAGRYMRIGKYPLSLVGNMDETPAFFDMVPAKSITKTGTKECVVR
TS
Run BLAST on NCBI

transcript from alignment at sc0001590:50424..51453+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037199 ID=TCONS_00037199|Name=TCONS_00037199|organism=Clytia hemisphaerica|type=transcript|length=1030bp|location=Sequence derived from alignment at sc0001590:50424..51453+ (Clytia hemisphaerica)
CGAATATAATCGGTTTTTTAAAACAAGCATCGAATACCAAAAGGAAACGC
CAGTCAACTATTACATCTTTCCTGGCACCTGGACAAAATCAAGTTGATGA
CTCTGTGGTATATCTAAGAAGTAAGTACATACTATTTTGCTCTGCGAAGA
ACAAATAAAATCTTCCCTTTGCGTTAAAATTACCATATATAGTTggtatt
tttttggtaaaagtatttgaattattatttttaccatttcaGGTAAAGCA
GCAGCACCCCCACCGAGTAAAAAGCGTGTCGGACGACCACCAAATTCACT
TACAGATGACCAAATCAATCGAATGCTGGAAAGGAATCATGACTACAACG
ATCTCTTACGAAAAGCCACGTATTTTGATTCAGTTATCATCAACTTTTAC
TTAAACCCTGACAGCGTGAAGAATGCCAACGAAATTGAACACTCCACCAG
AAAACGTTACACCGAGAAAACAAAAAGGGAAATGAGAGAACACTACCTAC
TCACGCAAAACTTTGTGGCTTCTGCCAAAGCTTTTAATGTTAACGAATCC
ACCCTTCGTAATATTGTGAAAACCCTCCCTAGAAACGTTAAACCGATTGA
CAAAGGAAACCGTTCAGGAGCTGGTAGGCCATTAACATACCCCTTAGAAG
TTGAAAATGATCTTGTATGCTGGATTCTCAAGCTAAGAGATATGCATTTT
CCAGTATCTGTGCTCGCTTTACAGGAGAAGGGAAGAAGTGTTATCTGCCC
TCACAATCCCACATTCAATGCTAGTCGTGGTTGGGTCCAAAAGTTTTTCG
CAAGGCATCGACTATCCCTACGCAGCCGAACATCTGTCAGCCAAAAGCTT
CCCCAGCAACTAGAATCTTCTATCACTAAGTTCTATCTTGATGCTGGTCG
CTACATGAGGATCGGTAAATATCCCTTGTCACTTGTTGGGAACATGGACG
AAACACCGGCATTTTTTGATATGGTACCAGCTAAAAGCATCACTAAAACC
GGTACCAAAGAATGTGTGGTGAGAACATCA

Coding sequence (CDS) from alignment at sc0001590:50424..51453+

>TCONS_00037199 ID=TCONS_00037199|Name=TCONS_00037199|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0001590:50424..51453+ (Clytia hemisphaerica)
AATATAATCGGTTTTTTAAAACAAGCATCGAATACCAAAAGGAAACGCCA
GTCAACTATTACATCTTTCCTGGCACCTGGACAAAATCAAGTTGATGACT
CTGTGGTATATCTAAGAAGTAAAGCAGCAGCACCCCCACCGAGTAAAAAG
CGTGTCGGACGACCACCAAATTCACTTACAGATGACCAAATCAATCGAAT
GCTGGAAAGGAATCATGACTACAACGATCTCTTACGAAAAGCCACGTATT
TTGATTCAGTTATCATCAACTTTTACTTAAACCCTGACAGCGTGAAGAAT
GCCAACGAAATTGAACACTCCACCAGAAAACGTTACACCGAGAAAACAAA
AAGGGAAATGAGAGAACACTACCTACTCACGCAAAACTTTGTGGCTTCTG
CCAAAGCTTTTAATGTTAACGAATCCACCCTTCGTAATATTGTGAAAACC
CTCCCTAGAAACGTTAAACCGATTGACAAAGGAAACCGTTCAGGAGCTGG
TAGGCCATTAACATACCCCTTAGAAGTTGAAAATGATCTTGTATGCTGGA
TTCTCAAGCTAAGAGATATGCATTTTCCAGTATCTGTGCTCGCTTTACAG
GAGAAGGGAAGAAGTGTTATCTGCCCTCACAATCCCACATTCAATGCTAG
TCGTGGTTGGGTCCAAAAGTTTTTCGCAAGGCATCGACTATCCCTACGCA
GCCGAACATCTGTCAGCCAAAAGCTTCCCCAGCAACTAGAATCTTCTATC
ACTAAGTTCTATCTTGATGCTGGTCGCTACATGAGGATCGGTAAATATCC
CTTGTCACTTGTTGGGAACATGGACGAAACACCGGCATTTTTTGATATGG
TACCAGCTAAAAGCATCACTAAAACCGGTACCAAAGAATGTGTGGTGAGA
ACATCAAATATAATCGGTTTTTTAAAACAAGCATCGAATACCAAAAGGAA
ACGCCAGTCAACTATTACATCTTTCCTGGCACCTGGACAAAATCAAGTTG
ATGACTCTGTGGTATATCTAAGAAGTAAAGCAGCAGCACCCCCACCGAGT
AAAAAGCGTGTCGGACGACCACCAAATTCACTTACAGATGACCAAATCAA
TCGAATGCTGGAAAGGAATCATGACTACAACGATCTCTTACGAAAAGCCA
CGTATTTTGATTCAGTTATCATCAACTTTTACTTAAACCCTGACAGCGTG
AAGAATGCCAACGAAATTGAACACTCCACCAGAAAACGTTACACCGAGAA
AACAAAAAGGGAAATGAGAGAACACTACCTACTCACGCAAAACTTTGTGG
CTTCTGCCAAAGCTTTTAATGTTAACGAATCCACCCTTCGTAATATTGTG
AAAACCCTCCCTAGAAACGTTAAACCGATTGACAAAGGAAACCGTTCAGG
AGCTGGTAGGCCATTAACATACCCCTTAGAAGTTGAAAATGATCTTGTAT
GCTGGATTCTCAAGCTAAGAGATATGCATTTTCCAGTATCTGTGCTCGCT
TTACAGGAGAAGGGAAGAAGTGTTATCTGCCCTCACAATCCCACATTCAA
TGCTAGTCGTGGTTGGGTCCAAAAGTTTTTCGCAAGGCATCGACTATCCC
TACGCAGCCGAACATCTGTCAGCCAAAAGCTTCCCCAGCAACTAGAATCT
TCTATCACTAAGTTCTATCTTGATGCTGGTCGCTACATGAGGATCGGTAA
ATATCCCTTGTCACTTGTTGGGAACATGGACGAAACACCGGCATTTTTTG
ATATGGTACCAGCTAAAAGCATCACTAAAACCGGTACCAAAGAATGTGTG
GTGAGAACATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022007XLOC_022007Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037199-proteinTCONS_00037199-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037199-exon-sc0001590-1491911889:50424..50543TCONS_00037199-exon-sc0001590-1491911889:50424..50543Clytia hemisphaericaexon
TCONS_00037199-exon-sc0001590-1510915933:50424..50543TCONS_00037199-exon-sc0001590-1510915933:50424..50543Clytia hemisphaericaexon
TCONS_00037199-exon-sc0001590-1575043694:50424..50543TCONS_00037199-exon-sc0001590-1575043694:50424..50543Clytia hemisphaericaexon
TCONS_00037199-exon-sc0001590-1491911889:50666..51453TCONS_00037199-exon-sc0001590-1491911889:50666..51453Clytia hemisphaericaexon
TCONS_00037199-exon-sc0001590-1510915933:50666..51453TCONS_00037199-exon-sc0001590-1510915933:50666..51453Clytia hemisphaericaexon
TCONS_00037199-exon-sc0001590-1575043694:50666..51453TCONS_00037199-exon-sc0001590-1575043694:50666..51453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001590supercontigsc0001590:50424..51453 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.81696e-05	0.415729	0.248019	0.0715223	3.75819	3.05392	1.75047	4.84686	0.0979661	0	0	0.292944	0	0	0	0	0	0	0	0	0	0.121046	0	0	8.97158	5.09914	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006600HTH_CenpB_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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