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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037195 ID=TCONS_00037195|Name=TCONS_00037195|organism=Clytia hemisphaerica|type=transcript|length=582bp
TGTGAACTGACGTGTTGGGTGGTACCGTCTAGTGGTTTTTAGACAGTGAT
TTTAagaGTAAAGTGATGGAAGATATTAAGCTACGTTACTACGATGTCGT
GCGGAAGCTTTTGATCGCGCGTACACCGCCTGGTCAAGAAACACAAGACC
TACCGCCAGTCTATGATACGGAACAtgagaaaatacaaaaagaacAATTG
ATCAAACTTTTCAATCGAACTCCTGAAGAGGTTGAAGAGGAGGAAGTCCT
GGTACAACAGCTCAAGAAAATCAAATCTCATAAAAAGGAGCGCGAAAAGA
AGTTGCACAACTTCAACAAATTGATTACAACAGCCGAAAACAAANAGGAG
CGCGAAATGAAGTTGCACAACTTCAACAAATTGATTACAACAGCCGAAAA
CAAACCGTCTTCTCTATCGCTTCTTGGATCCAATGACAGGAGTGGCATTT
ATCGTCACATCACACGACAGCTGATGGACACATTATTAAGAAAGagaaga
aactgaaaacaaAGAACAAGAAACGGCGCGCCGAGTCTACCACAACTTCC
AGCGCATCGAGCGCGACTTCCACCACAAATAN Run BLAST on NCBI transcript from alignment at sc0001590:35222..42954+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037195 ID=TCONS_00037195|Name=TCONS_00037195|organism=Clytia hemisphaerica|type=transcript|length=7733bp|location=Sequence derived from alignment at sc0001590:35222..42954+ (Clytia hemisphaerica)
TGTGAACTGACGTGTTGGGTGGTACCGTCTAGTGGTTTTTAGACAGTGAT
TTTAGTAAGTATCTTTTGGATTTTGGTTTTGTATAGCCTCTCTATAACAA
TCACTGTTTGCTCCTAGCCTTTATTTTTCTGTCTACTTATTTCTTGCCTT
TTTTTGGACTTCGACATTTTCAGTTTCTAACTCAAGtgttttttagattt
tgttCGCATTTTCTGGTATTTTTGTGCTTATTTTAGCTGTTTGCCAAAGA
TCATTCCCGTTCAAAATCCTATCCTATTCGTTGGGACCTTTTTGGTAATC
AGTCTGGTGGGGAAAAGTTCTTTTTGCCCAGTTCTTTAATAGTATACATT
TTTTCAGGACGTCTACGCCAAATAAAATGACTTTGCATGTTTGCTAGTTG
TATACTTGTAAGTTCTATAGAGCGTTGGGTTCTTGTGGCacgattttcca
aaaattttcttccttgTGTTAGAACTTgtcgtattttttttttatcttat
cttTATATGCCAACACTTTTTCTAGGATTACTGTAGTGTtagtctggaga
ccatactctgttacaaaaatatttctatcctgttaaaatcccaacaactt
cactgaaatacagagtatggaattattgactcgattcaaatcacttcaaa
tcacaaaagaaaaaaccgttattttttcaaaacaattcaaaagctcGCGC
CACTTCTTGAAACAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatact
tttgtttatcaaatcataacaataagatattagccaatcaaattctgcga
ttaattcttgcatcttgtataattcccggctacttctgtctatactttga
tacttttttgaaaccacatagacagagaagtcgggtctcccagctactGT
AGTGTGAAAGTCTTTTGAATGATTTTGTTACTTTaacaactttttcattt
tttagagaGTAAAGTGATGGAAGATATTAAGCTACGTTACTACGATGTCG
TGCGGAAGCTTTTGATCGCGCGTACACCGCCTGGTCAAGAAACACAAGAC
CTACCGCCAGTCTATGATACGGAACAtgagaaaatacaaaaagaacAATT
GATCAAACTTTTCAATCGAACTCCTGAAGAGGTTAGTCACAGAGCttagg
aatttttgaaaaataatttttttgacttttcaaaacTAGGTCGGCTCAAA
ACCAGCttatatattttcataaaaatgctCTTTCATATGTTAGATACGAG
AGTTTCGGAAACTCATTCCTTTTGGAAATATAGACCGTCAAAGTTAGGCC
CCTTTTAGGAGCACCCTGTTCCTTTTGTGTGTCGATACGATACCCATACA
TCGTCAATACTGTACGTCTTGACTTTTNCTACGTTACTACGATGTCGTGC
GGAAGCTTTTGATCGCGCGTACACCGCCTGGTCAAGAAACACAAGACCTA
CCGCCAGTCTATGATACGGAACAtgagaaaatacaaaaagaacAATTGAT
CAAACTTTTCAATCGAACTCCTGAAGAGGTTAGTCACAGAGCttaggaat
ttttgaaaaataatttttttgacttttcaaaacTAGGTCGGCTCAAAACC
AGCttatatattttcataaaaatgctCTTTCATATGTTAGATACGAGAGT
TTCGGAAACTCATTCCTTTTGGAAATATAGACCGTCAAAGTTAGGCCCCT
TTTAGGAGCACCCTGTTCCTTTTGTGTGTCGATACGATACCCATACATCG
TCAATACTGTACATCTTGACTTTTCGTACTTTAAATATTTTATGGAATTA
GCTAGACTAGGGTTACCAAGTTAGTTAATTGGGTCGGCCAGAAAAGCACT
TTTCATAGCCTACGAAAGGTGACTTTTTTTTATATCTTGTTATATTACAA
GCTTTCTGTACATATATAATGTGAAGTGATGAAGTAATAAAGTACCTGAA
CAGCAGTAAATTCTTCGTGAAAAACAGTTCCTTCAGCAAAGaatgcttat
acttactatctCAACAAAGTTTTTGCTTCATTAAGGTTGAAGAGGAGGAA
GTCCTGGTACAACAGCTCAAGAAAATCAAATCTCATAAAAAGGAGCGCGA
AAAGAAGTTGCACAACTTCAACAAATTGATTACAACAGCCGAAAACAAAN
AGGAGCGCGAAATGAAGTTGCACAACTTCAACAAATTGATTACAACAGCC
GAAAACAAACCGTCTTCTCTATCGCTTCTTGGATCCAATGACAGGAGTGG
CATTTATCGTCACATCACACGACAGCTGATGGACACATTATTAAGTGAGT
CTTCCCCTCCCCTCCTTTGTTACTTAAGAAATAATTCTCTCTTGTTACGT
TCTATGTATCTACCAATCTCTCCAACCGCTCTGATTGGTTCAAAACTGag
ttaaaaaaagttataaaccTTTATCGCACAACAATCTTTCTTAGAGTATA
TGGCCCCTAAAACGGCGttattaaaatgaggattctgacttttagatttt
acagaattagacgatttttgtttactttgaaaaaatgacggttatactta
aaaatgagtatGTTTTGGTTTGAGACAGctaataacatatttgcgtctaa
aggaaacgggcttttccaaaaaaaaccgtatacgccctgttgaggaggtc
catttccgttccaagggggtaaggtttgatgtgtggcggaattccacagg
gagatacaaaaatctgtcaaaaataactggaattccagggggggAGGCCT
TTTAAATcgtactaaaattcagaattccagaggggttcaAACCTGAAATT
GTCTGGAATTCCAGAGGGTTACAtcatttccagccacaaaatgatggacc
tcctcaacagggagtatacggtttttttctggaaaagcccaatattaCGT
CTGAAGGAAATAATTATTACAACgcaaaaattagataaaaatggCATATA
GTCCactaggaaactttctacacctaatgcagATACTTTTGTGACTTTAT
GAGTAGAATATATAGTATCTTAAAGGTCAATCAGTCTTTTAggggcccta
gaatcagcattgataaaaccgaaaattcattcattttttctttgcatgaa
aaataggctgattatgtcaaaaaatttagaaacaagtaaaaaacatttaa
ggctcaaaaggctgatttcctaagaaacattgaggctgcttggtaaaact
agtttcttaaaaaaaaacgtgtaatttatATAAATCAAAGAGTCATAGTT
TTCATAAACTACGCTAAGAGCTCTTCGTTGAATTTTCTCAATTTGTTTGT
TGGTGTGTTTTACAAAATTCATCCAAATCAATGGACATTAAttagaatta
gaaaaaatataGGCGTGACACAAGGCCTTTgctgtttttaaagaaatgaa
GGGGCGAATGCgtcgaaagttcgattttagcctggacgtcaattgataat
tgcgcgcataggccccgacaaagtcaaATCTTTTCAATCAGTTGCCTTTT
AAAGGCCTATTTGGCGCTGGGTACTGGGCCAAAAAAACGTACTAATGAAT
TCTCGGAATAACGGCTTGAGAGCAAATTTCTCCCAACTccgttggaaaga
taaaagTTCTCAAATTCAGACCCGGTGTGAAGTTATACTTTTTTCTTAGC
Cattctgttgaatttcaaaacttgaccggttcactgagacaggggtgtgg
tAGAGGAGTAGTCTATTTTGTGtctattttttcattgttttagaCCTATA
TTTTGATATAGCTATGTTATATATAATTCCTCAATTGGTCTTACATTTCA
GTTCAACCAGTAAGTCCAACATTCAAGTgaaatcaaaaactttgaggaca
ttaaagatttttattgttttggtgCATATCTAAACACGCTGTAAGTTCTG
TGCTTAATAAAGCTATGATTACTTGTAGTCTTTAGAGAATTGTTCGTTAT
CCTTGAAGCTTTTGCCAACGCAACAATTTTCTTGCGATAAAAATTACAAA
CGTTCATTTCTTCCAGCACCAGAAGAGTTTTTTGTCCTTCAAATCGTTTT
AAAAAACTAACATGTCCAAATCTAAATAAATACTTTACTGCATTTTTTAT
CGTTTTAGAGGCTGTAATAATCTATATCTCAGGCGGACAAACATCGAGGA
GGAACGAGCCGCAAATGGCATGAAtttaataagaacaatgaggcatTTTG
CCAAAAGTGAGAAATGTACCTcaagtctttttttatttgagtatTTTATA
TCGTTTTAGAGGCTGTAATAATCTATGcctcaaacaaacaaaaaagaagg
AGGAGCAAGCTGCAAACGGAatggcttttataagaacaatgaggcggTTT
GCCAAAATGAGTGATGTactgaaagtcttttttttatttaagtattttat
aTCGTTTTAGAGGCTGTAATAATCTATGcctcaaacaaacaaaaaagaag
gAGGAGCAAGCCGCAAATGGCATGAATTTCATAAGACAAATAAGAAAGTT
TGCCAAAGTGAGTGATGTACTGAGAATCTTCTTTTGAGTATTTGAGTTTT
TTATCATATGCAACCAGGTTTTGTAAGTCTAGTTGCTCTTGCTCATAACC
TGATCGTATCAGTAAAAAGAGTTTCTTCGAAGGCCAAACACAAAATAACG
GTTTCTAGTCAGCTAGCTTCAGTGTCGAGAACTTTGCTTAAGGATTAATG
AAAACCTTGTTTATGTCATGATAATTGTCCActtattttttaaggaaaaa
catgGCTTACTGTTAAAGGGCAACTCATTCGATTTGGTCAGCCTCTTGAA
GGAGGAGGGTAAGAATTTTATTTGGTTAAACTTTTTTGGTTGCTACTTTA
TACGTCTATTAGATTTTCAGGGTCCACGTCACGGGGCAGGGGCAGGGGGA
CCATCTTTTTGCAAAACGAAAATCTTTTGGTTGCGTGTTCTTAGACTCTA
TATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNccccccccccccaattcaTGGCGTGG
GAcctgttgttttgattttgctcaACTATCGTgagtttcattttttgaac
aATGAATTACACAATATTTAATGAAAAGCGAATTTCTCTGCAAAATATGA
AACAAAACAATGGATTTTTAATTACTCTAATTAACTTTTGGAACGTAGAG
TATCAAATCTAAGTTTTGACATTAAACTTAAGACTGAGAATATAACCAAG
AGGTCAGTGACCCTGGAGGCAGTTTTTCAATCTTGGCCAAGCTAAATATT
TTGATCTAAGTTTATTTTTTAAGtagcattttcttgaaattcagTTCCAT
TTTTCAAGGACAAATGGCTAGTATTTAACGTATTTGGTGTCacttttgtc
aaaatttcaaaaaatgaaggtgcTTCAAAATGTCTTTCATTGGGTTTGAC
ACAACATTTTCAGGATAATGAGGGCTTTAAAATCGACCCTCTATGTATGT
AGAACACTGATGTTTTATTCTTGGTGTACCAATCTtcaattgattgaaaa
tttgacccAAAGTTTAGACACCATCATTTATTgatgttttgcaaaaaaaa
tcaaaaccaagcCGAGACAAGCATTGAATTCGATTTAGCAATGTTGATAT
ATTCTTAGACTGTCTATTTGGAAAGTTTCCTGGTTGCAAACGCAATGGGC
ACATGATTAAGTGAGTCTTCCCTTCCCCTCCTTTGTTACTTAAGAAATAA
TTCTCTCTTGATAAGTTCTTCTCTGTTCTCTGTATCTATCAATCTCTCCA
ACCGTTCTGATTTTTTTCCTAAACTTTTACAGTAGAAGctcaataactcg
aacaagcACGGGGAACTTTGAAATTTGTTATGGgttaaggtttataaggc
attgttaactgaccataaaacttgttcgagtaaaAGAGATTCgatttata
gaggttcgaattcaAGAGACTGTATTTTTGTCGATCTCAGGAAAGagaag
aaactgaaaacaaAGAACAAGAAACGGCGCGCCGAGTCTACCACAACTTC
CAGCGCATCGAGCGCGACTTCCACCACAAATAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037195-exon-sc0001590-1491911889:35222..35275 | TCONS_00037195-exon-sc0001590-1491911889:35222..35275 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1510915933:35222..35275 | TCONS_00037195-exon-sc0001590-1510915933:35222..35275 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1575043694:35222..35275 | TCONS_00037195-exon-sc0001590-1575043694:35222..35275 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1491911889:36327..36502 | TCONS_00037195-exon-sc0001590-1491911889:36327..36502 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1510915933:36327..36502 | TCONS_00037195-exon-sc0001590-1510915933:36327..36502 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1575043694:36327..36502 | TCONS_00037195-exon-sc0001590-1575043694:36327..36502 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1491911889:37407..37665 | TCONS_00037195-exon-sc0001590-1491911889:37407..37665 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1510915933:37407..37665 | TCONS_00037195-exon-sc0001590-1510915933:37407..37665 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1575043694:37407..37665 | TCONS_00037195-exon-sc0001590-1575043694:37407..37665 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1491911889:42862..42954 | TCONS_00037195-exon-sc0001590-1491911889:42862..42954 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1510915933:42862..42954 | TCONS_00037195-exon-sc0001590-1510915933:42862..42954 | Clytia hemisphaerica | exon |
| TCONS_00037195-exon-sc0001590-1575043694:42862..42954 | TCONS_00037195-exon-sc0001590-1575043694:42862..42954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001590 | supercontig | sc0001590:35222..42954 + |
Blast
The following BLAST results are available for this feature:
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