TCONS_00037194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037194
Unique NameTCONS_00037194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037194 ID=TCONS_00037194|Name=TCONS_00037194|organism=Clytia hemisphaerica|type=transcript|length=777bp
ttttttctgTAGTGTTTTGACAACATTTCTAATTTGATTATGAAATCATT
TTTGTAAAGTAGCTACTGTGTGTGCATGTGAACTGACGTGTTGGGTGGTA
CCGTCTAGTGGTTTTTAGACAGTGATTTTAagaGTAAAGTGATGGAAGAT
ATTAAGCTACGTTACTACGATGTCGTGCGGAAGCTTTTGATCGCGCGTAC
ACCGCCTGGTCAAGAAACACAAGACCTACCGCCAGTCTATGATACGGAAC
AtgagaaaatacaaaaagaacAATTGATCAAACTTTTCAATCGAACTCCT
GAAGAGGTTGAAGAGGAGGAAGTCCTGGTACAACAGCTCAAGAAAATCAA
ATCTCATAAAAAGGAGCGCGAAAAGAAGTTGCACAACTTCAACAAATTGA
TTACAACAGCCGAAAACAAANAGGAGCGCGAAATGAAGTTGCACAACTTC
AACAAATTGATTACAACAGCCGAAAACAAACCGTCTTCTCTATCGCTTCT
TGGATCCAATGACAGGAGTGGCATTTATCGTCACATCACACGACAGCTGA
TGGACACATTATTAATTCAACCAGTAAGTCCAACATTCAAGTgaaatcaa
aaactttgaggacattaaagatttttattgttttggtgCATATCTAAACA
CGCTGCTGTAATAATCTATATCTCAGGCGGACAAACATCGAGGAGGAACG
AGCCGCAAATGGCATGAAtttaataagaacaatgaggcatTTTGCCAAAA
gaaaaacatgGCTTACTGTTAAAGGGC
Run BLAST on NCBI

transcript from alignment at sc0001590:35146..40142+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037194 ID=TCONS_00037194|Name=TCONS_00037194|organism=Clytia hemisphaerica|type=transcript|length=4997bp|location=Sequence derived from alignment at sc0001590:35146..40142+ (Clytia hemisphaerica)
ttttttctgTAGTGTTTTGACAACATTTCTAATTTGATTATGAAATCATT
TTTGTAAAGTAGCTACTGTGTGTGCATGTGAACTGACGTGTTGGGTGGTA
CCGTCTAGTGGTTTTTAGACAGTGATTTTAGTAAGTATCTTTTGGATTTT
GGTTTTGTATAGCCTCTCTATAACAATCACTGTTTGCTCCTAGCCTTTAT
TTTTCTGTCTACTTATTTCTTGCCTTTTTTTGGACTTCGACATTTTCAGT
TTCTAACTCAAGtgttttttagattttgttCGCATTTTCTGGTATTTTTG
TGCTTATTTTAGCTGTTTGCCAAAGATCATTCCCGTTCAAAATCCTATCC
TATTCGTTGGGACCTTTTTGGTAATCAGTCTGGTGGGGAAAAGTTCTTTT
TGCCCAGTTCTTTAATAGTATACATTTTTTCAGGACGTCTACGCCAAATA
AAATGACTTTGCATGTTTGCTAGTTGTATACTTGTAAGTTCTATAGAGCG
TTGGGTTCTTGTGGCacgattttccaaaaattttcttccttgTGTTAGAA
CTTgtcgtattttttttttatcttatcttTATATGCCAACACTTTTTCTA
GGATTACTGTAGTGTtagtctggagaccatactctgttacaaaaatattt
ctatcctgttaaaatcccaacaacttcactgaaatacagagtatggaatt
attgactcgattcaaatcacttcaaatcacaaaagaaaaaaccgttattt
tttcaaaacaattcaaaagctcGCGCCACTTCTTGAAACAATANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNcatacttttgtttatcaaatcataacaata
agatattagccaatcaaattctgcgattaattcttgcatcttgtataatt
cccggctacttctgtctatactttgatacttttttgaaaccacatagaca
gagaagtcgggtctcccagctactGTAGTGTGAAAGTCTTTTGAATGATT
TTGTTACTTTaacaactttttcattttttagagaGTAAAGTGATGGAAGA
TATTAAGCTACGTTACTACGATGTCGTGCGGAAGCTTTTGATCGCGCGTA
CACCGCCTGGTCAAGAAACACAAGACCTACCGCCAGTCTATGATACGGAA
CAtgagaaaatacaaaaagaacAATTGATCAAACTTTTCAATCGAACTCC
TGAAGAGGTTAGTCACAGAGCttaggaatttttgaaaaataatttttttg
acttttcaaaacTAGGTCGGCTCAAAACCAGCttatatattttcataaaa
atgctCTTTCATATGTTAGATACGAGAGTTTCGGAAACTCATTCCTTTTG
GAAATATAGACCGTCAAAGTTAGGCCCCTTTTAGGAGCACCCTGTTCCTT
TTGTGTGTCGATACGATACCCATACATCGTCAATACTGTACGTCTTGACT
TTTNCTACGTTACTACGATGTCGTGCGGAAGCTTTTGATCGCGCGTACAC
CGCCTGGTCAAGAAACACAAGACCTACCGCCAGTCTATGATACGGAACAt
gagaaaatacaaaaagaacAATTGATCAAACTTTTCAATCGAACTCCTGA
AGAGGTTAGTCACAGAGCttaggaatttttgaaaaataatttttttgact
tttcaaaacTAGGTCGGCTCAAAACCAGCttatatattttcataaaaatg
ctCTTTCATATGTTAGATACGAGAGTTTCGGAAACTCATTCCTTTTGGAA
ATATAGACCGTCAAAGTTAGGCCCCTTTTAGGAGCACCCTGTTCCTTTTG
TGTGTCGATACGATACCCATACATCGTCAATACTGTACATCTTGACTTTT
CGTACTTTAAATATTTTATGGAATTAGCTAGACTAGGGTTACCAAGTTAG
TTAATTGGGTCGGCCAGAAAAGCACTTTTCATAGCCTACGAAAGGTGACT
TTTTTTTATATCTTGTTATATTACAAGCTTTCTGTACATATATAATGTGA
AGTGATGAAGTAATAAAGTACCTGAACAGCAGTAAATTCTTCGTGAAAAA
CAGTTCCTTCAGCAAAGaatgcttatacttactatctCAACAAAGTTTTT
GCTTCATTAAGGTTGAAGAGGAGGAAGTCCTGGTACAACAGCTCAAGAAA
ATCAAATCTCATAAAAAGGAGCGCGAAAAGAAGTTGCACAACTTCAACAA
ATTGATTACAACAGCCGAAAACAAANAGGAGCGCGAAATGAAGTTGCACA
ACTTCAACAAATTGATTACAACAGCCGAAAACAAACCGTCTTCTCTATCG
CTTCTTGGATCCAATGACAGGAGTGGCATTTATCGTCACATCACACGACA
GCTGATGGACACATTATTAAGTGAGTCTTCCCCTCCCCTCCTTTGTTACT
TAAGAAATAATTCTCTCTTGTTACGTTCTATGTATCTACCAATCTCTCCA
ACCGCTCTGATTGGTTCAAAACTGagttaaaaaaagttataaaccTTTAT
CGCACAACAATCTTTCTTAGAGTATATGGCCCCTAAAACGGCGttattaa
aatgaggattctgacttttagattttacagaattagacgatttttgttta
ctttgaaaaaatgacggttatacttaaaaatgagtatGTTTTGGTTTGAG
ACAGctaataacatatttgcgtctaaaggaaacgggcttttccaaaaaaa
accgtatacgccctgttgaggaggtccatttccgttccaagggggtaagg
tttgatgtgtggcggaattccacagggagatacaaaaatctgtcaaaaat
aactggaattccagggggggAGGCCTTTTAAATcgtactaaaattcagaa
ttccagaggggttcaAACCTGAAATTGTCTGGAATTCCAGAGGGTTACAt
catttccagccacaaaatgatggacctcctcaacagggagtatacggttt
ttttctggaaaagcccaatattaCGTCTGAAGGAAATAATTATTACAACg
caaaaattagataaaaatggCATATAGTCCactaggaaactttctacacc
taatgcagATACTTTTGTGACTTTATGAGTAGAATATATAGTATCTTAAA
GGTCAATCAGTCTTTTAggggccctagaatcagcattgataaaaccgaaa
attcattcattttttctttgcatgaaaaataggctgattatgtcaaaaaa
tttagaaacaagtaaaaaacatttaaggctcaaaaggctgatttcctaag
aaacattgaggctgcttggtaaaactagtttcttaaaaaaaaacgtgtaa
tttatATAAATCAAAGAGTCATAGTTTTCATAAACTACGCTAAGAGCTCT
TCGTTGAATTTTCTCAATTTGTTTGTTGGTGTGTTTTACAAAATTCATCC
AAATCAATGGACATTAAttagaattagaaaaaatataGGCGTGACACAAG
GCCTTTgctgtttttaaagaaatgaaGGGGCGAATGCgtcgaaagttcga
ttttagcctggacgtcaattgataattgcgcgcataggccccgacaaagt
caaATCTTTTCAATCAGTTGCCTTTTAAAGGCCTATTTGGCGCTGGGTAC
TGGGCCAAAAAAACGTACTAATGAATTCTCGGAATAACGGCTTGAGAGCA
AATTTCTCCCAACTccgttggaaagataaaagTTCTCAAATTCAGACCCG
GTGTGAAGTTATACTTTTTTCTTAGCCattctgttgaatttcaaaacttg
accggttcactgagacaggggtgtggtAGAGGAGTAGTCTATTTTGTGtc
tattttttcattgttttagaCCTATATTTTGATATAGCTATGTTATATAT
AATTCCTCAATTGGTCTTACATTTCAGTTCAACCAGTAAGTCCAACATTC
AAGTgaaatcaaaaactttgaggacattaaagatttttattgttttggtg
CATATCTAAACACGCTGTAAGTTCTGTGCTTAATAAAGCTATGATTACTT
GTAGTCTTTAGAGAATTGTTCGTTATCCTTGAAGCTTTTGCCAACGCAAC
AATTTTCTTGCGATAAAAATTACAAACGTTCATTTCTTCCAGCACCAGAA
GAGTTTTTTGTCCTTCAAATCGTTTTAAAAAACTAACATGTCCAAATCTA
AATAAATACTTTACTGCATTTTTTATCGTTTTAGAGGCTGTAATAATCTA
TATCTCAGGCGGACAAACATCGAGGAGGAACGAGCCGCAAATGGCATGAA
tttaataagaacaatgaggcatTTTGCCAAAAGTGAGAAATGTACCTcaa
gtctttttttatttgagtatTTTATATCGTTTTAGAGGCTGTAATAATCT
ATGcctcaaacaaacaaaaaagaaggAGGAGCAAGCTGCAAACGGAatgg
cttttataagaacaatgaggcggTTTGCCAAAATGAGTGATGTactgaaa
gtcttttttttatttaagtattttataTCGTTTTAGAGGCTGTAATAATC
TATGcctcaaacaaacaaaaaagaaggAGGAGCAAGCCGCAAATGGCATG
AATTTCATAAGACAAATAAGAAAGTTTGCCAAAGTGAGTGATGTACTGAG
AATCTTCTTTTGAGTATTTGAGTTTTTTATCATATGCAACCAGGTTTTGT
AAGTCTAGTTGCTCTTGCTCATAACCTGATCGTATCAGTAAAAAGAGTTT
CTTCGAAGGCCAAACACAAAATAACGGTTTCTAGTCAGCTAGCTTCAGTG
TCGAGAACTTTGCTTAAGGATTAATGAAAACCTTGTTTATGTCATGATAA
TTGTCCActtattttttaaggaaaaacatgGCTTACTGTTAAAGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022005XLOC_022005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037194-exon-sc0001590-1491911889:35146..35275TCONS_00037194-exon-sc0001590-1491911889:35146..35275Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1510915933:35146..35275TCONS_00037194-exon-sc0001590-1510915933:35146..35275Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1575043694:35146..35275TCONS_00037194-exon-sc0001590-1575043694:35146..35275Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1491911889:36327..36502TCONS_00037194-exon-sc0001590-1491911889:36327..36502Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1510915933:36327..36502TCONS_00037194-exon-sc0001590-1510915933:36327..36502Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1575043694:36327..36502TCONS_00037194-exon-sc0001590-1575043694:36327..36502Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1491911889:37407..37665TCONS_00037194-exon-sc0001590-1491911889:37407..37665Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1510915933:37407..37665TCONS_00037194-exon-sc0001590-1510915933:37407..37665Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1575043694:37407..37665TCONS_00037194-exon-sc0001590-1575043694:37407..37665Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1491911889:39173..39261TCONS_00037194-exon-sc0001590-1491911889:39173..39261Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1510915933:39173..39261TCONS_00037194-exon-sc0001590-1510915933:39173..39261Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1575043694:39173..39261TCONS_00037194-exon-sc0001590-1575043694:39173..39261Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1491911889:39482..39577TCONS_00037194-exon-sc0001590-1491911889:39482..39577Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1510915933:39482..39577TCONS_00037194-exon-sc0001590-1510915933:39482..39577Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1575043694:39482..39577TCONS_00037194-exon-sc0001590-1575043694:39482..39577Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1491911889:40116..40142TCONS_00037194-exon-sc0001590-1491911889:40116..40142Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1510915933:40116..40142TCONS_00037194-exon-sc0001590-1510915933:40116..40142Clytia hemisphaericaexon
TCONS_00037194-exon-sc0001590-1575043694:40116..40142TCONS_00037194-exon-sc0001590-1575043694:40116..40142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001590supercontigsc0001590:35146..40142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.803395	0.965591	0	0.492552	0.296828	0	0	0.949383	0	0.264641	0.163305	0.895804	0.540997	1.16982e-05	0.975557	0.541939	0	0.406436	0	1.14051	0.880132	0	0.349863	1.54909	0	0	1.3218	0.547918	0.397343	1.34078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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