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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037179 ID=TCONS_00037179|Name=TCONS_00037179|organism=Clytia hemisphaerica|type=transcript|length=1528bp
actcaaatttgtcagattggtattggtactaaattagggggtgggtccca
tgatattttgtcaaattcaaaaagtcatgttggtatcgataccaaattaa
ggggttggtcccccttttttctgataattaagattttcaagttggtatcg
ataccaaaataagggggtgggtcccccctttttctgaaaatcatgatttt
caagttggtatcgataccaattttggggtggtggtgttaacttagctcaa
aaggtcaaaagtcaggttttcgGGCTATGGGCTGGTATTATAAacgttga
cccccccccctgaagaTACACCATATTAGCGTTCGAATTGGTATACTACA
CATCAGCGATTAGGAAACCTTTCCAATTTAGGTACTGTCCCTTTTGCACT
CCTGATGGATGACTCTACCCATTCTCCGAGTTCTGGGAAAAAAGACATCG
AAGCTCTAAAAAATTCGGCTTTGAAGCGCCACAACTGGGACGTTTCATCA
ACTACCTCATCGACTTCGAATAGCACTAACAACTTCTCCACCAAAGGCAC
ATGCTTCCAAGGAATGACGGTCGATTGCTTGAGAGTTATTCCTATTTTGG
TGCCATCACATGCCAGCATATGGATGTTATCGCCACAACCAAAGCAAGGC
TTACGGAAGTCGATCCCCATCGCAGAAGCCCAAGCAAACCACCACTTGAT
GAAAGTATTCTTAGTCATGAATGGCTTCTCCGACAGGAATCGACCATAAT
TTGCATTCATGACCTTGACGAAACCGGTGAAAGTTTGCTTGCTCGTCATC
ACCAAATCGACAAAATTCCATCCGACTTCATAGCTACAGCTCACGGCATT
CGTGGAACAGAAAATGAAGTCTTTGGCACCATCGTACTCCTTTGTGCACT
TTCCTGACATACACCGTCGTCTGAAAAAAGTTGCTTCGTGGGCACCAACC
AACGTGTACAAAATAGTTTTGCCGTCTTCGAAAAGGATACCGTCAGGAGA
ATCTTCATCGTACCATACATTCtgtaaaaaatgattgaatttttttcttt
cacaacCTTACAATCATTACAGTTATTTCGAACTCGTAAGGAAAGATGAA
ATTTGCTCGAactacagagagattcgaagtgtggaaaatattaaaaaggT
GTCTCCTTGAAAAAGAACTAATAATAAGTTCGAGAAAGATCGGAATAGAA
GTCCGAATCAGCGAGAGTCCTCAGAATTcttagccaaaatttactgtttc
ttgtaaaaaaacatttattcaTTTAATTACCATAGTATGTActcttttcc
aaaatttgaatagaaaaaaaacattttatatgaAATAATTACCCCGCATT
CACACTCGCCGTCCTTGTTAGGTTTTAATTCAAAGGGTCCAGGTTCAGGA
TGAAGCATCAGAAATGATCTTAATCTTGTTTTTTTGTTCATAGCGTCACT
TGATGAATCACTGGAAACAATCTTCTTACTTTTTGAGCCTTTGTGGAATT
TCCATAGTCCCGTTTCTTCGTCAAATAC Run BLAST on NCBI transcript from alignment at sc0001587:17409..20206- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037179 ID=TCONS_00037179|Name=TCONS_00037179|organism=Clytia hemisphaerica|type=transcript|length=2798bp|location=Sequence derived from alignment at sc0001587:17409..20206- (Clytia hemisphaerica)
ACTCAAATTTGTCAGATTGGTATTGGTACTAAATTAGGGGGTGGGTCCCA
TGATATTTTGTCAAATTCAAAAAGTCATGTTGGTATCGATACCAAATTAA
GGGGTTGGTCCCCCTTTTTTCTGATAATTAAGATTTTCAAGTTGGTATCG
ATACCAAAATAAGGGGGTGGGTCCCCCCTTTTTCTGAAAATCATGATTTT
CAAGTTGGTATCGATACCAATTTTGGGGTGGTGGTGTTAACTTAGCTCAA
AAGGTCAAAAGTCAGGTTTTCGGGCTATGGGCTGGTATTATAAACGTTGA
CCCCCCCCCCTGAAGATACACCATATTAGCGTTCGAATTGGTATACTACA
CATCAGCGATTAGGAAACCTTTCCAATTTAGGTAAGTGCGGATTTTTTCA
TGAAATTTCTTTGGAGCAGCTTGTCATTGATTATGAGTTTGAACTAGGCT
TCATTTTGATTGAAAAATAAACTTGAAAATTATTACAATATTAAATCAAT
CACTAAGTATATATACGAACTAAAAAAGATAAAAGGTTAGAAAAGATCAA
CGTAAACTGGCAATTGCAATTGCTGCCTTTTTTCTAAATGAAAGTTCTCT
AGCTACGTTCCATTGGTTGATAAAAAATTGAACGTAGAATGTAAAGTGTT
CTTGAGTCATCAATTTGGCAGACGTTTTGATACATTGAAGAAAACTATTG
AACTGCTCACATATCGATGTGTTGACACCAGCGTATCCTTGTAGCCTGTT
TGATCGGAATGTCTTTGAACACTTATGGGTATACCCATGGAAAATGTCAT
GAAAAAATCTGGTTAGTTCGAAGAAGCCACTCTCTCGATTACGACAATAC
TCCTCCAAGGAGCATGCAAAATCGTAAAATACTGATAGCGGTGCCTCTTT
TAGAAACATATAGAGGGATTGAGCTGCATCTTTTCTTCCTTCGGCCTTTG
GGATAATATGAAATCCATAGCAGTGCCCATGACAGGGGCAGAACCAAAGG
AAGAGATAGGTGCAGCCTTTTTTTGATACTGTCGGGAAGGCTTTACTGCA
AACAGTATCGTCTGTTTTCTTGTCATCTTTGTCAGCCGTGAAGTTCCTGG
GTTCCCGCAATTGATGTCCTTCTTTCGTGAAATAGTATGCACGGCCATCT
CTTGGGGGGTTGTACTTTTTGAAATTGTTGGGTTTTTCTTCTTCGACGTT
TTCTCCTTGTAATTTTTTCCTCTTGTCGATGATCGATTTTAAAAGTAATT
TCGTATATTTTTCAGGTACTGTCCCTTTTGCACTCCTGATGGATGACTCT
ACCCATTCTCCGAGTTCTGGGAAAAAAGACATCGAAGCTCTAAAAAATTC
GGCTTTGAAGCGCCACAACTGGGACGTTTCATCAACTACCTCATCGACTT
CGAATAGCACTAACAACTTCTCCACCAAAGGCACATGCTTCCAAGGTAAG
AAGTTAACAATGCTTGCTTTAGGTGCTGTCAAGGTAGNAAAGGCACATGC
TTCCAAGGTAAGAAGTTAACAATGCTTGCTTTAGGTGCTGTCAAGGTAGC
AAGAAGTTTAGCCAAGTCGATCACTTCTGCTCCTTTTCCTCCAAGAACCA
TGTATTGTACGGCTAACAGAAGTGCTTCATCTGAACCATTGAGCTCAGCA
ACGGCTGTCAACAGTTGCGTATCTGTAAGAGACTCCCTATCAAGTTTGTG
AAGAGCCAATTTCCTAACATTGTTGTTTATCAATGTCCTTTTGTCTCCAT
ATGTTTCTTTGTCAATAAAAACTCGATCCAAGCCTTTGTTTGGGGTAACA
ATCGCAGCCTCTTTATTTTTTGTTTCAATAGGAATGACGGTCGATTGCTT
GAGAGTTATTCCTATTTTGGTGCCATCACATGCCAGCATATGGATGTTAT
CGCCACAACCAAAGCAAGGCTTACGGAAGTCGATCCCCATCGCAGAAGCC
CAAGCAAACCACCACTTGATGAAAGTATTCTTAGTCATGAATGGCTTCTC
CGACAGGAATCGACCATAATTTGCATTCATGACCTTGACGAAACCGGTGA
AAGTTTGCTTGCTCGTCATCACCAAATCGACAAAATTCCATCCGACTTCA
TAGCTACAGCTCACGGCATTCGTGGAACAGAAAATGAAGTCTTTGGCACC
ATCGTACTCCTTTGTGCACTTTCCTGACATACACCGTCGTCTGAAAAAAG
TTGCTTCGTGGGCACCAACCAACGTGTACAAAATAGTTTTGCCGTCTTCG
AAAAGGATACCGTCAGGAGAATCTTCATCGTACCATACATTCTGTAAAAA
ATGATTGAATTTTTTTCTTTCACAACCTTACAATCATTACAGTTATTTCG
AACTCGTAAGGAAAGATGAAATTTGCTCGAACTACAGAGAGATTCGAAGT
GTGGAAAATATTAAAAAGGTGTCTCCTTGAAAAAGAACTAATAATAAGTT
CGAGAAAGATCGGAATAGAAGTCCGAATCAGCGAGAGTCCTCAGAATTCT
TAGCCAAAATTTACTGTTTCTTGTAAAAAAACATTTATTCATTTAATTAC
CATAGTATGTACTCTTTTCCAAAATTTGAATAGAAAAAAAACATTTTATA
TGAAATAATTACCCCGCATTCACACTCGCCGTCCTTGTTAGGTTTTAATT
CAAAGGGTCCAGGTTCAGGATGAAGCATCAGAAATGATCTTAATCTTGTT
TTTTTGTTCATAGCGTCACTTGATGAATCACTGGAAACAATCTTCTTACT
TTTTGAGCCTTTGTGGAATTTCCATAGTCCCGTTTCTTCGTCAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037179-exon-sc0001587-1575043694:19826..20206 | TCONS_00037179-exon-sc0001587-1575043694:19826..20206 | Clytia hemisphaerica | exon |
| TCONS_00037179-exon-sc0001587-1575043694:18762..18941 | TCONS_00037179-exon-sc0001587-1575043694:18762..18941 | Clytia hemisphaerica | exon |
| TCONS_00037179-exon-sc0001587-1575043694:17409..18375 | TCONS_00037179-exon-sc0001587-1575043694:17409..18375 | Clytia hemisphaerica | exon |
| TCONS_00037179-exon-sc0001587-1510915933:19826..20206 | TCONS_00037179-exon-sc0001587-1510915933:19826..20206 | Clytia hemisphaerica | exon |
| TCONS_00037179-exon-sc0001587-1510915933:18762..18941 | TCONS_00037179-exon-sc0001587-1510915933:18762..18941 | Clytia hemisphaerica | exon |
| TCONS_00037179-exon-sc0001587-1510915933:17409..18375 | TCONS_00037179-exon-sc0001587-1510915933:17409..18375 | Clytia hemisphaerica | exon |
| TCONS_00037179-exon-sc0001587-1491911889:19826..20206 | TCONS_00037179-exon-sc0001587-1491911889:19826..20206 | Clytia hemisphaerica | exon |
| TCONS_00037179-exon-sc0001587-1491911889:18762..18941 | TCONS_00037179-exon-sc0001587-1491911889:18762..18941 | Clytia hemisphaerica | exon |
| TCONS_00037179-exon-sc0001587-1491911889:17409..18375 | TCONS_00037179-exon-sc0001587-1491911889:17409..18375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001587 | supercontig | sc0001587:17409..20206 - |
Blast
The following BLAST results are available for this feature:
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