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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037175 ID=TCONS_00037175|Name=TCONS_00037175|organism=Clytia hemisphaerica|type=transcript|length=2169bp
GCGGGGTAATTATTtcatataaaatgttttttttctattcaaattttgga
aaagagTACATACTATGGTAATTAAAtgaataaatgtttttttacaagaa
acagtaaattttggctaagAATTCTGAGGACTCTCGCTGATTCGGACTTC
TATTCCGATCTTTCTCGAACTTATTATTAGTTCTTTTTCAAGGAGACAcc
tttttaatattttccacacttcgaatctctctgtagtTCGAGCAAATTTC
ATCTTTCCTTACGAGTTCGAAATAACTGTAATGATTGTAAGgttgtgaaa
gaaaaaaattcaatcattttttacaGAATGTATGGTACGATGAAGATTCT
CCTGACGGTATCCTTTTCGAAGACGGCAAAACTATTTTGTACACGTTGGT
TGGTGCCCACGAAGCAACTTTTTTCAGACGACGGTGTATGTCAGGAAAGT
GCACAAAGGAGTACGATGGTGCCAAAGACTTCATTTTCTGTTCCACGAAT
GCCGTGAGCTGTAGCTATGAAGTCGGATGGAATTTTGTCGATTTGGTGAT
GACGAGCAAGCAAACTTTCACCGGTTTCGTCAAGGTCATGAATGCAAATT
ATGGTCGATTCCTGTCGGAGAAGCCATTCATGACTAAGAATACTTTCATC
AAGTGGTGGTTTGCTTGGGCTTCTGCGATGGGGATCGACTTCCGTAAGCC
TTGCTTTGGTTGTGGCGATAACATCCATATGCTGGCATGTGATGGCACCA
AAATAGGAATAACTCTCAAGCAATCGACCGTCATTCctattgaaacaaaa
aataaagagGCTGCGATTGTTACCCCAAACAAAGGCTTGGATCGAGTTTT
TATTGACAAAGAAACATATGGAGACAAAAGGACATTGATAAACAACAATG
TTAGGAAATTGGCTCTTCACAAACTTGATAGGGAGTCTCTTACAGATACG
CAACTGTTGACAGCCGTTGCTGAGCTCAATGGTTCAGATGAAGCACTTCT
GTTAGCCGTACAATACATGGTTCTTGGAGGAAAAGGAGCAGAAGTGATCG
ACTTGGCTAAACTTCTTGCTACCTTGACAGCACCTAAAGCAAGCATTGTT
AACTTCTTACCTTGGAAGCATGTGCCTTTNCTACCTTGACAGCACCTAAA
GCAAGCATTGTTAACTTCTTACCTTGGAAGCATGTGCCTTTGGTGGAGAA
GTTGTTAGTGCTATTCGAAGTCGATGAGGTAGTTGATGAAACGTCCCAGT
TGTGGCGCTTCAAAGCCGAATTTTTTAGAGCTTCGATGTCTTTTTTCCCA
GAACTCGGAGAATGGGTAGAGTCATCCATCAGGAGTGCAAAAGGGACAGT
ACCTGAAAAATATacgaaattacttttaaaatcgATCATCGACAAGAGGA
AAAAATTACAAGGAGAAAACGTCGAAGAAGAAAAACCcaacaatttcaaa
aagtacaaccccccaaGAGATGGCCGTGCATACTATTTCACGAAAGAAGG
ACATCAATTGCGGGAACCCAGGAACTTCACGGCTGACAAAGATGACAAGA
AAACAGACGATACTGTTTGCAGTAAAGCCTTCCCGACAGTATCAAAAAAA
GGCTGCACCTATCTCTTCCTTTGGTTCTGCCCCTGTCATGGGCACTGCTA
TGGATTTCATATTATCCCAAAGGCCGAAGGAAGAAAAGATGCAGCTCAAT
CCCTCTATATGTTTCTAAAAGAGGCACCGCTATCAGTATTTTACGATTTT
GCATGCTCCTTGGAGGAGTATTGTCGTAATCGAGAGAGTGGCTTCTTCGA
ACTAACCAGATTTTTTCATGACATTTTCCATGGGTATACCCATAAGTGTT
CAAAGACATTCCGATCAAACAGGCTACAAGGATACGCTGGTGTCAACACA
TCGATATGTGAGCAGTTCAATAGTTTTCTTCAATGTATCAAAACGTCTGC
CAAATTGATGACTCAAGAACACTTTACATTCTACGTTCAATTTTTTATCA
ACCAATGGAACGTAGCTAGAGAACTTTCATTTAGAAAAAAGGCAGCAATT
GCAATTGCCAGTTTACGTTGATCTTTTCTaaccttttatcttttttagtt
CGTATATATACTTAGTGATTGATTTAATATTGTAAtaattttcaagttta
tttttcaatcaaaatgaaG Run BLAST on NCBI transcript from alignment at sc0001587:17590..19758+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037175 ID=TCONS_00037175|Name=TCONS_00037175|organism=Clytia hemisphaerica|type=transcript|length=2169bp|location=Sequence derived from alignment at sc0001587:17590..19758+ (Clytia hemisphaerica)
GCGGGGTAATTATTtcatataaaatgttttttttctattcaaattttgga
aaagagTACATACTATGGTAATTAAAtgaataaatgtttttttacaagaa
acagtaaattttggctaagAATTCTGAGGACTCTCGCTGATTCGGACTTC
TATTCCGATCTTTCTCGAACTTATTATTAGTTCTTTTTCAAGGAGACAcc
tttttaatattttccacacttcgaatctctctgtagtTCGAGCAAATTTC
ATCTTTCCTTACGAGTTCGAAATAACTGTAATGATTGTAAGgttgtgaaa
gaaaaaaattcaatcattttttacaGAATGTATGGTACGATGAAGATTCT
CCTGACGGTATCCTTTTCGAAGACGGCAAAACTATTTTGTACACGTTGGT
TGGTGCCCACGAAGCAACTTTTTTCAGACGACGGTGTATGTCAGGAAAGT
GCACAAAGGAGTACGATGGTGCCAAAGACTTCATTTTCTGTTCCACGAAT
GCCGTGAGCTGTAGCTATGAAGTCGGATGGAATTTTGTCGATTTGGTGAT
GACGAGCAAGCAAACTTTCACCGGTTTCGTCAAGGTCATGAATGCAAATT
ATGGTCGATTCCTGTCGGAGAAGCCATTCATGACTAAGAATACTTTCATC
AAGTGGTGGTTTGCTTGGGCTTCTGCGATGGGGATCGACTTCCGTAAGCC
TTGCTTTGGTTGTGGCGATAACATCCATATGCTGGCATGTGATGGCACCA
AAATAGGAATAACTCTCAAGCAATCGACCGTCATTCctattgaaacaaaa
aataaagagGCTGCGATTGTTACCCCAAACAAAGGCTTGGATCGAGTTTT
TATTGACAAAGAAACATATGGAGACAAAAGGACATTGATAAACAACAATG
TTAGGAAATTGGCTCTTCACAAACTTGATAGGGAGTCTCTTACAGATACG
CAACTGTTGACAGCCGTTGCTGAGCTCAATGGTTCAGATGAAGCACTTCT
GTTAGCCGTACAATACATGGTTCTTGGAGGAAAAGGAGCAGAAGTGATCG
ACTTGGCTAAACTTCTTGCTACCTTGACAGCACCTAAAGCAAGCATTGTT
AACTTCTTACCTTGGAAGCATGTGCCTTTNCTACCTTGACAGCACCTAAA
GCAAGCATTGTTAACTTCTTACCTTGGAAGCATGTGCCTTTGGTGGAGAA
GTTGTTAGTGCTATTCGAAGTCGATGAGGTAGTTGATGAAACGTCCCAGT
TGTGGCGCTTCAAAGCCGAATTTTTTAGAGCTTCGATGTCTTTTTTCCCA
GAACTCGGAGAATGGGTAGAGTCATCCATCAGGAGTGCAAAAGGGACAGT
ACCTGAAAAATATacgaaattacttttaaaatcgATCATCGACAAGAGGA
AAAAATTACAAGGAGAAAACGTCGAAGAAGAAAAACCcaacaatttcaaa
aagtacaaccccccaaGAGATGGCCGTGCATACTATTTCACGAAAGAAGG
ACATCAATTGCGGGAACCCAGGAACTTCACGGCTGACAAAGATGACAAGA
AAACAGACGATACTGTTTGCAGTAAAGCCTTCCCGACAGTATCAAAAAAA
GGCTGCACCTATCTCTTCCTTTGGTTCTGCCCCTGTCATGGGCACTGCTA
TGGATTTCATATTATCCCAAAGGCCGAAGGAAGAAAAGATGCAGCTCAAT
CCCTCTATATGTTTCTAAAAGAGGCACCGCTATCAGTATTTTACGATTTT
GCATGCTCCTTGGAGGAGTATTGTCGTAATCGAGAGAGTGGCTTCTTCGA
ACTAACCAGATTTTTTCATGACATTTTCCATGGGTATACCCATAAGTGTT
CAAAGACATTCCGATCAAACAGGCTACAAGGATACGCTGGTGTCAACACA
TCGATATGTGAGCAGTTCAATAGTTTTCTTCAATGTATCAAAACGTCTGC
CAAATTGATGACTCAAGAACACTTTACATTCTACGTTCAATTTTTTATCA
ACCAATGGAACGTAGCTAGAGAACTTTCATTTAGAAAAAAGGCAGCAATT
GCAATTGCCAGTTTACGTTGATCTTTTCTaaccttttatcttttttagtt
CGTATATATACTTAGTGATTGATTTAATATTGTAAtaattttcaagttta
tttttcaatcaaaatgaaG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037175-exon-sc0001587-1491911889:17590..19758 | TCONS_00037175-exon-sc0001587-1491911889:17590..19758 | Clytia hemisphaerica | exon |
| TCONS_00037175-exon-sc0001587-1510915933:17590..19758 | TCONS_00037175-exon-sc0001587-1510915933:17590..19758 | Clytia hemisphaerica | exon |
| TCONS_00037175-exon-sc0001587-1575043694:17590..19758 | TCONS_00037175-exon-sc0001587-1575043694:17590..19758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001587 | supercontig | sc0001587:17590..19758 + |
Blast
The following BLAST results are available for this feature:
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