TCONS_00037169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037169
Unique NameTCONS_00037169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037169 ID=TCONS_00037169|Name=TCONS_00037169|organism=Clytia hemisphaerica|type=transcript|length=219bp
CAGAGCTGAGATGGCCATTGACACGAATAGATGAAGGAGAAGATTTGGAA
TCAGATCCTATGATATCTCTGATCCCTTCCcagactttcaaaatatttgt
agCATGAACAGAGAAAAAACTGGAATAATAATTATTGTTACTCTTACGTG
TAAGAGTAACTATGAgatttttgtatgttttataTCTTTGATAGTAAAAA
GATTTCATAATAGGGTCCT
Run BLAST on NCBI

transcript from alignment at sc0001583:47546..47764

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037169 ID=TCONS_00037169|Name=TCONS_00037169|organism=Clytia hemisphaerica|type=transcript|length=219bp|location=Sequence derived from alignment at sc0001583:47546..47764 (Clytia hemisphaerica)
AGGACCCTATTATGAAATCTTTTTACTATCAAAGAtataaaacatacaaa
aatcTCATAGTTACTCTTACACGTAAGAGTAACAATAATTATTATTCCAG
TTTTTTCTCTGTTCATGctacaaatattttgaaagtctgGGAAGGGATCA
GAGATATCATAGGATCTGATTCCAAATCTTCTCCTTCATCTATTCGTGTC
AATGGCCATCTCAGCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021992XLOC_021992Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037169-exon-sc0001583-1491911889:47546..47764TCONS_00037169-exon-sc0001583-1491911889:47546..47764Clytia hemisphaericaexon
TCONS_00037169-exon-sc0001583-1510915933:47546..47764TCONS_00037169-exon-sc0001583-1510915933:47546..47764Clytia hemisphaericaexon
TCONS_00037169-exon-sc0001583-1575043694:47546..47764TCONS_00037169-exon-sc0001583-1575043694:47546..47764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001583supercontigsc0001583:47546..47764 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25651	1.22529	7.11341	6.95936	5.08341	9.37295	16.1544	6.04941	2.11767	1.31154	0	3.34731	1.67133	1.73569	1.42697	1.53136	3.77302	2.90042	0	1.39771	0	1.7777	0	0	6.74528	10.836	0	0	1.39462	2.8418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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