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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037164 ID=TCONS_00037164|Name=TCONS_00037164|organism=Clytia hemisphaerica|type=transcript|length=1561bp
tatttttttttttgaaaaaattttagttttgaatttcattaaTAAAGTTC
ATTTCATTGGATCTATTGATCACAATCAAGGTTCTAATTGAGCGTTTCGT
TTCACGAAATACCTTTTCATTTGAGTTTTTGTACTTAACAATTACACGTC
TAACAATACCATCATTCGACATTTCCAATTCTGAAACCATACCATACTGA
TAAGTCGAACAAAGAACAGAATCGTTCTTTAAGAACAAAACAATATCTCC
AACGTTGAGAGCGTCATCCGTTCGAAACCATTTTTGCTGATTAATCAGTT
TGGGCACGTGCGAAAGTAACCAATTCTCGAACCATGACTGAAAGATTTTA
CGATTGTCGTCAATGATTTTGCTTGGATTTGACTCTATTAGTAGTGGATC
AGTAGGGCTCCTTGCGTTGTTTCTACCAAGTTTGAGAGGGTTTGGAGTGA
TGATGTCAAGGTTTTCAAGATCTGAGGTTGTGCTGCCAATGACAATTGGC
ATGTCGTTGATGCTATTGCTGATTGATGCAGCAACTGTCTCCCATTGCAT
AATTGACAGCTTGCTCTTGACGAATATCTTTTCGAGTGACAACTTGATCT
CCTTGATTTTTCTTTCCACTCTTCCGTGCTCGTTGTGTCCGCCAACCGGG
CAAACCTTGAAGTCAACAGACTGATTGGTGTGAAGCTGATACTTGGCATC
ATGGAAGTCGAACTTCATGTTTTCGCAGCCACATATCAATTAACTACCAG
CATCAATAAGAAGCGTTTTGGGATATCCAACGTCGCATGAGAAGCGAATG
AACGATTGGATGAATGATTGGGTGCTGTAATCTTCCATGATTTTGATACt
cgttgttgtagttgtggAGCAGCAGAATACCAGAAACCAAATTTTGATGG
TGGTTCTTNAGAAGCGAATGAACGATTGGACGAATGATTGGGTGCTGTAA
TCTTCCATGATTTTGATACtcgttgttgtagttgtggAGCAGCAGAATAC
CAGAAACCAAATTTTGATGGTGGTTCTTTTATGGTGATGCGAGTAACAAT
CGAAGGGTCCACACAAATCCACTTGTGTGGTGTAGAAGGGTGGTGCAATG
TTGAGAACGTGTTTCGAAACAGGTCCCATGACAATGTCAAGCGTCTTTTT
GAGAATGTAACGACAACGTTGACATAACTTTCTGATAAGTTTGATAATTG
ATCGTCCTTCGAGGATGTATGCTTCTTTATTGACATATCGAAGTGATGTT
TCGACACCAGAGTGATTTGCGGAAGGATGATTCCAATGAACCTCATTGAT
GATGGCGATTCCAACTGGTGAAAACTTTTCCAACATTGGAACGACGAATG
ATGTTGAAGTGAGATCTTTGATGCTTTGATTGAATCGACCAACGATGGCG
GTGTCATTCATGTTGAGTACTCGTTCTGTATGGTAGATGATGCCATCCTT
TTCGTGGGAGAtatcttgaaacttttttgaactAGTGAAGTGTTTCAATT
CTTctgttgattttttgaaaaagtaaagcTTGGCTTGTCTGATCTCTTCT
TCTGTTGGTAG Run BLAST on NCBI protein sequence of TCONS_00037164-protein >TCONS_00037164-protein ID=TCONS_00037164-protein|Name=TCONS_00037164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
LPTEEEIRQAKLYFFKKSTEELKHFTSSKKFQDISHEKDGIIYHTERVLN
MNDTAIVGRFNQSIKDLTSTSFVVPMLEKFSPVGIAIINEVHWNHPSANH
SGVETSLRYVNKEAYILEGRSIIKLIRKLCQRCRYILKKTLDIVMGPVSK
HVLNIAPPFYTTQVDLCGPFDCYSHHHKRTTIKIWFLVFCCSTTTTTSIK
IMEDYSTQSFVQSFIRFXRTTIKIWFLVFCCSTTTTTSIKIMEDYSTQSF
IQSFIRFSCDVGYPKTLLIDAGS Run BLAST on NCBI transcript from alignment at sc0001582:40920..42480 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037164 ID=TCONS_00037164|Name=TCONS_00037164|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at sc0001582:40920..42480 (Clytia hemisphaerica)
CTACCAACAGAAGAAGAGATCAGACAAGCCAAgctttactttttcaaaaa
atcaacagAAGAATTGAAACACTTCACTagttcaaaaaagtttcaagata
TCTCCCACGAAAAGGATGGCATCATCTACCATACAGAACGAGTACTCAAC
ATGAATGACACCGCCATCGTTGGTCGATTCAATCAAAGCATCAAAGATCT
CACTTCAACATCATTCGTCGTTCCAATGTTGGAAAAGTTTTCACCAGTTG
GAATCGCCATCATCAATGAGGTTCATTGGAATCATCCTTCCGCAAATCAC
TCTGGTGTCGAAACATCACTTCGATATGTCAATAAAGAAGCATACATCCT
CGAAGGACGATCAATTATCAAACTTATCAGAAAGTTATGTCAACGTTGTC
GTTACATTCTCAAAAAGACGCTTGACATTGTCATGGGACCTGTTTCGAAA
CACGTTCTCAACATTGCACCACCCTTCTACACCACACAAGTGGATTTGTG
TGGACCCTTCGATTGTTACTCGCATCACCATAAAAGAACCACCATCAAAA
TTTGGTTTCTGGTATTCTGCTGCTccacaactacaacaacgaGTATCAAA
ATCATGGAAGATTACAGCACCCAATCATTCGTCCAATCGTTCATTCGCTT
CTNAAGAACCACCATCAAAATTTGGTTTCTGGTATTCTGCTGCTccacaa
ctacaacaacgaGTATCAAAATCATGGAAGATTACAGCACCCAATCATTC
ATCCAATCGTTCATTCGCTTCTCATGCGACGTTGGATATCCCAAAACGCT
TCTTATTGATGCTGGTAGTTAATTGATATGTGGCTGCGAAAACATGAAGT
TCGACTTCCATGATGCCAAGTATCAGCTTCACACCAATCAGTCTGTTGAC
TTCAAGGTTTGCCCGGTTGGCGGACACAACGAGCACGGAAGAGTGGAAAG
AAAAATCAAGGAGATCAAGTTGTCACTCGAAAAGATATTCGTCAAGAGCA
AGCTGTCAATTATGCAATGGGAGACAGTTGCTGCATCAATCAGCAATAGC
ATCAACGACATGCCAATTGTCATTGGCAGCACAACCTCAGATCTTGAAAA
CCTTGACATCATCACTCCAAACCCTCTCAAACTTGGTAGAAACAACGCAA
GGAGCCCTACTGATCCACTACTAATAGAGTCAAATCCAAGCAAAATCATT
GACGACAATCGTAAAATCTTTCAGTCATGGTTCGAGAATTGGTTACTTTC
GCACGTGCCCAAACTGATTAATCAGCAAAAATGGTTTCGAACGGATGACG
CTCTCAACGTTGGAGATATTGTTTTGTTCTTAAAGAACGATTCTGTTCTT
TGTTCGACTTATCAGTATGGTATGGTTTCAGAATTGGAAATGTCGAATGA
TGGTATTGTTAGACGTGTAATTGTTAAGTACAAAAACTCAAATGAAAAGG
TATTTCGTGAAACGAAACGCTCAATTAGAACCTTGATTGTGATCAATAGA
TCCAATGAAATGAACTTTAttaatgaaattcaaaactaaaattttttcaa
aaaaaaaaata Coding sequence (CDS) from alignment at sc0001582:40920..42480 >TCONS_00037164 ID=TCONS_00037164|Name=TCONS_00037164|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0001582:40920..42480 (Clytia hemisphaerica)
CTACCAACAGAAGAAGAGATCAGACAAGCCAAgctttactttttcaaaaa
atcaacagAAGAATTGAAACACTTCACTagttcaaaaaagtttcaagata
TCTCCCACGAAAAGGATGGCATCATCTACCATACAGAACGAGTACTCAAC
ATGAATGACACCGCCATCGTTGGTCGATTCAATCAAAGCATCAAAGATCT
CACTTCAACATCATTCGTCGTTCCAATGTTGGAAAAGTTTTCACCAGTTG
GAATCGCCATCATCAATGAGGTTCATTGGAATCATCCTTCCGCAAATCAC
TCTGGTGTCGAAACATCACTTCGATATGTCAATAAAGAAGCATACATCCT
CGAAGGACGATCAATTATCAAACTTATCAGAAAGTTATGTCAACGTTGTC
GTTACATTCTCAAAAAGACGCTTGACATTGTCATGGGACCTGTTTCGAAA
CACGTTCTCAACATTGCACCACCCTTCTACACCACACAAGTGGATTTGTG
TGGACCCTTCGATTGTTACTCGCATCACCATAAAAGAACCACCATCAAAA
TTTGGTTTCTGGTATTCTGCTGCTccacaactacaacaacgaGTATCAAA
ATCATGGAAGATTACAGCACCCAATCATTCGTCCAATCGTTCATTCGCTT
CTNAAGAACCACCATCAAAATTTGGTTTCTGGTATTCTGCTGCTccacaa
ctacaacaacgaGTATCAAAATCATGGAAGATTACAGCACCCAATCATTC
ATCCAATCGTTCATTCGCTTCTCATGCGACGTTGGATATCCCAAAACGCT
TCTTATTGATGCTGGTAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037164-exon-sc0001582-1491911889:40920..42480 | TCONS_00037164-exon-sc0001582-1491911889:40920..42480 | Clytia hemisphaerica | exon |
| TCONS_00037164-exon-sc0001582-1510915933:40920..42480 | TCONS_00037164-exon-sc0001582-1510915933:40920..42480 | Clytia hemisphaerica | exon |
| TCONS_00037164-exon-sc0001582-1575043694:40920..42480 | TCONS_00037164-exon-sc0001582-1575043694:40920..42480 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001582 | supercontig | sc0001582:40920..42480 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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