TCONS_00037147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037147
Unique NameTCONS_00037147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037147 ID=TCONS_00037147|Name=TCONS_00037147|organism=Clytia hemisphaerica|type=transcript|length=2539bp
ATACCGTATGATGAAACGAGCTTCAGGAGAATCTGTTGAAGAAGAAATGG
AGAAGGTTCGAAGCAGGAAAGTTCTTGGCGTCCTCAAACCTATGAAGTCT
GGAAAAGTTAGCAATGACCGAATGAAAAACCaaaGCTCAAGAACAAAGCT
TGGCTCTTTGACCTCTTCTTCACGGCAACCAAGTGGAAATAGACAATCGG
GAGGATTCCAAATTTACGGAGACGAATCGAACCCTGGTATGTTGTCATCG
GCAACCGGTCAATTGAAAAGCAATCCTTTGGATCCCACCAATAATAGGGA
GAATGTCAAACAGATGCAAAGAGTGAAAGGAACAAAAGTAAAAGGAGGGT
CAGTTTCATCTGGAGCATGCGCGTTTGAGATTTTCAAAGACGAAGAACAA
AATACTGAAATTCATGCTGCCACACCCAAAGAGATCGTCGTCAGCTCAAG
AAAACCATTGAGTTCGAAGAAACGTGAAGAAGTTCAAGATCCTTTCTACA
GCAAAACTATTGACGATCCGAAAGTGATCCACAAATATTGCAAAAATGTC
ATTAACATGGGAACAAGAGAGATTTCATTCGAAGAAATCAAAGCGCAACT
CCCAAGATATGACATGTTGAAGAAGAAAGCTACTGAACAAAGACCAAAAA
TAGTGCGATCAGCCTTGGACTTTGGTCACCAAGCAGCAACAAGATCCCTT
ACACCAGAACCGACAGAACAAATACTGCCAGGAACACCACAAGAACCAGC
AATTAACCGTACACCATCCAGTGCTAAGAACAACAACATTGGTGATATTT
TGCAGAACCTCGAAGATGAATTCAACTCGCCCATTGAAAGTACTGGTTAT
TATGGACCACGGAAAACCAAACAACCAGATATTACGGGAATCACTGAAAT
CTTCTCCAATAATCTCCAAGACCAAGAGGATTTGACATGCAAGATGCAAG
AGTTGGATAGGACTGAACAGTTTGGTAGATTTCCCACTACTGCTACAGTA
AGAAAGCAAGGTGAAATCGATAATACATTCAAATTTTAGGGACTGGGACG
AACAACTTTGGATgcaaatattcttaattttgatCAACGGTGCGGAACAA
ATAAACTTATTAATCAATCACTTACAACAGATATTATCCGAACCTTCATT
CTTGGAGCAATTAGATGCGGCTATTCTGCGGAAAGAAGACTTGCTTATGG
AAGACGACTAGTGGTGAATCATTGGGTTTTAGTTTTGTAGAATGAAGTTA
CATGTTGCAACGGAGACAATTGCCCATTCTCCTCTTTATACGTATGAGAA
GGAATAAACAAATTCATGAACGTTCTGGATCCACTACGGTGTTGTTTGAT
GGATGATTGACAGTAACGGCTAAACTTATTTCCATTCAAATGACTAGAAG
AAAAATTGCAACACCTGCTCATCTTCACAAAAAGGTACTCATAGGGCATT
ATTTGGAAGtagcaaatgtcaaattttctgtaatatttaaatttcaaaat
taagccTTCAAACTCCTTCCAATATACGTAAAGCATTTTGACTGCACTTC
AGTTCAATCTTTCAAAAGTATAAAGTCTCCAAATAGACTAAACGATGAAT
TATCTTATGTTATCGAGATCGAGGAGAAAAGTTTTCAGATATCTGCAAAT
GATTCAGCAAAGAATGTTTTTACCTTGTTCACCGTTTGAACCCTCATCAT
TCTTGGCGACTGGAATATTTTTTTACCTGTATCTTTTCTAATATTTTACT
GTTGTTAATTCACATATATTATATGTtagttatgttttttttttgttatt
ttatgaaAGTATATACAGAGTGTCTGGAAATGAGCGTGGAACAGGATCTT
TTAATAGAACTCCTCAAAACCCATACTATACCCATATAATACTTGGTTTG
AATATCTATAGATGAAGCTTGGTTTACATCTTTTTGAGTAAAAACAATAT
TCTCCATATACATATGCGAGAGTTTATGTAGCATCTTTGCCACTCATTGT
TTTTAATATGTATTCCGCTCCCACTTTTTTTACGGACAAACTGTACAGTA
TTTGATGATGAAACACAAATatcatttaaaggttttagtGTACATAtgtc
ccggggggggcacttaggcaaaaatagatacggggacgtgccgctggtca
gggtacctttttcagtgttgcagaattactgacagggtatctaaaattgc
aaaattctgatctgacaggggcgcaatttcatgatgtgcgtctgacaggg
tctgtttttgccgtttttgcatgtagagttcttttgcaaatcgttttgac
gcggcggtgagcagactcctgcgaggggcaaacagctttttgcaaatact
tatcgCACAGCCAACACAGGCGCTTTGCTGCTGTTGTCTCGCACCACACG
CCCGCCATTGCGCCCTCTTAAAGGGATCGAGGTTATTTTCAAAGATACCT
CTATTGAACTATTTAGAATAAATGTTCAGCTGAATAGTGGTACTAACAAC
ATTGtttccggaaattttttttgaaaattgtattcTTTA
Run BLAST on NCBI

transcript from alignment at sc0001580:15645..19590+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037147 ID=TCONS_00037147|Name=TCONS_00037147|organism=Clytia hemisphaerica|type=transcript|length=3946bp|location=Sequence derived from alignment at sc0001580:15645..19590+ (Clytia hemisphaerica)
ATACCGTATGATGAAACGAGCTTCAGGAGAATCTGTTGAAGAAGAAATGG
AGAAGGTTCGAAGCAGGAAAGTTCTTGGCGTCCTCAAACCTATGAAGTCT
GGAAAAGTTAGCAATGACCGAATGAAAAACCaaagtaaaatttcatttct
ctcCATTATATGTGTTTTAACCCTCAAATTGTTTTAAGGAGGTTCTCTTT
GACAAAATTACCTCATTTATATTTTAGGCTCAAGAACAAAGCTTGGCTCT
TTGACCTCTTCTTCACGGCAACCAAGTGGAAATAGACAATCGGGAGGATT
CCAAATTTACGGAGACGAATCGAACCCTGGTATGTTGTCATCGGCAACCG
GTCAATTGAAAAGCAATCCTTTGGATCCCACCAATAATAGGGAGAATGTC
AAACAGATGCAAAGAGTGAAAGGAACAAAAGTAAGTGAATcataactttt
atcaaaatgtaGAAGCTATATTTGACATTTACCCTTTCAATACCTTGTGC
CGTGTAGATTTCAAGAGATTTCAATCTGAGCCGTTATCAATTGACAATGG
ATTTGAAAAATTGCGGAGCTTTAACTCTTAACTTTTTCCTCTTCAAAATG
ATCCTATAGAGTAGCTTTAGATCATTAATGTGATTTAATAGTTGATATTG
GTAATTTGCAGGTATTTTCAGTTTAAGTTGGTAGAACACTTGATTCTTAA
TTGTTCAATTTCATATTTAGCTAAGTTTTCTTATTGGTTATTTGCAGGTA
AAAGGAGGGTCAGTTTCATCTGGAGCATGCGCGTTTGAGATTTTCAAAGA
CGAAGAACAAAATACTGAAATTCATGCTGCCACACCCAAAGAGATCGTCG
TCAGCTCAAGAAAACCATTGAGTTCGAAGAAACGTGAAGAAGTTCAAGAT
CCTTTCTACAGCAAAACTGTAAGTCAAGTTTTCTTTCTAAGGTGTAGAGG
CTTTAAACCTTAAGCTAGATAAAtgagagtcgatattttacgtgggtTAT
CTCAGACTTTCAGATAGTTTTTCGACCAACCGTCTCGGCTATCTAATAAC
CGAACGGAGCATTCGAAGGAGTGGTGATTCGAACCTTTTCAACATCGACA
TCTTTGACCGTTCGGCTGTCGTcttaagagagagagagagagagaaaaaa
ctATAATTCTCCCCGAGCATCACATACACAAAATTTTAATGACCTTTGAT
ACACATTGAGTAACGATCTGTGCAAAGCAAAGCGCATTTGACCTCTCTTG
TGATAATTGACTgatttgaaaatgataaaaaattttaaccCTTAGCGTAT
CCGCCCGTTGCACGAGCATGCATTAATTTtgactttctttcaaaatatta
aataGTACAGAAAATTTTGTACATGGGATACGCTtgcttttcaaagattt
tgaatgtTCCTTCTTTTGCTACGATTCTTCTTTGtcaatctcttttcaaa
acactcATACCAACTCTCAGCTATTAAGTTTCGGAAGATTCCCCTTCCAT
CCTGCGTACTCTCCAGTTGTTTAGCTACCCGAGGCATTCgaacaatattt
caaaaatatgcaCAACACAAATCAACTTCTTCTGTATAGATTGACGATCC
GAAAGTGATCCACAAATATTGCAAAAATGTCATTAACATGGGAACAAGAG
AGATTTCATTCGAAGAAATCAAAGCGCAACTCCCAAGATATGACATGTTG
AAGAAGAAAGCTACTGAACAAAGGTATTACAAATCGATTCTATTTAACTT
ATTTAGGTACGCTTTTTAAACCGATTCTACTTTCAAACCGGTGTTTGTGT
GAAAACGTCGTGGGTAAAGCATTTTGGATCGCAAATAAGGGCTTCATTTT
CCATCTAAGGGATTCCTCTCGTTAAAATCAATGAAAAATATGTTTCTAAT
ATACAAAGTTATTTTAGCTATCTGTGTTTTATTTAAGCCAGCTCAAAGAT
AGCGTTTTAACCGAAGTTTCCGAATATGTAGGCATATACAGCATTACTTT
TAACACATCTTAGCCATCCGAAGCAACATATCGAACATTTTACTTTTAGA
CCAAAAATAGTGCGATCAGCCTTGGACTTTGGTCACCAAGCAGCAACAAG
ATCCCTTACACCAGAACCGACAGAACAAATACTGCCAGGAACACCACAAG
AACCAGCAATTAACCGTACACCATCCAGTGCTAAGAACAACAACATTGGT
GATATTTTGCAGAACCTCGAAGATGAATTCAACTCGCCCATTGAAAGTAC
TGGTTATTATGGACCACGGAAAACCAAACAACCAGATATTACGGGAATCA
CTGAAATCTTCTCCAATAATCTCCAAGACCAAGAGGATTTGACATGCAAG
ATGCAAGAGTTGGATAGGACTGAACAGTTTGGTAGATTTCCCACTACTGC
TACAGTAAGAAAGCAAGGTGAAATCGATAATACATTCAAATTTTAGGGAC
TGGGACGAACAACTTTGGATgcaaatattcttaattttgatCAACGGTGC
GGAACAAATAAACTTATTAATCAATCACTTACAACAGATATTATCCGAAC
CTTCATTCTTGGAGCAATTAGATGCGGCTATTCTGCGGAAAGAAGACTTG
CTTATGGAAGACGACTAGTGGTGAATCATTGGGTTTTAGTTTTGTAGAAT
GAAGTTACATGTTGCAACGGAGACAATTGCCCATTCTCCTCTTTATACGT
ATGAGAAGGAATAAACAAATTCATGAACGTTCTGGATCCACTACGGTGTT
GTTTGATGGATGATTGACAGTAACGGCTAAACTTATTTCCATTCAAATGA
CTAGAAGAAAAATTGCAACACCTGCTCATCTTCACAAAAAGGTACTCATA
GGGCATTATTTGGAAGtagcaaatgtcaaattttctgtaatatttaaatt
tcaaaattaagccTTCAAACTCCTTCCAATATACGTAAAGCATTTTGACT
GCACTTCAGTTCAATCTTTCAAAAGTATAAAGTCTCCAAATAGACTAAAC
GATGAATTATCTTATGTTATCGAGATCGAGGAGAAAAGTTTTCAGATATC
TGCAAATGATTCAGCAAAGAATGTTTTTACCTTGTTCACCGTTTGAACCC
TCATCATTCTTGGCGACTGGAATATTTTTTTACCTGTATCTTTTCTAATA
TTTTACTGTTGTTAATTCACATATATTATATGTtagttatgttttttttt
tgttattttatgaaAGTATATACAGAGTGTCTGGAAATGAGCGTGGAACA
GGATCTTTTAATAGAACTCCTCAAAACCCATACTATACCCATATAATACT
TGGTTTGAATATCTATAGATGAAGCTTGGTTTACATCTTTTTGAGTAAAA
ACAATATTCTCCATATACATATGCGAGAGTTTATGTAGCATCTTTGCCAC
TCATTGTTTTTAATATGTATTCCGCTCCCACTTTTTTTACGGACAAACTG
TACAGTATTTGATGATGAAACACAAATatcatttaaaggttttagtGTAC
ATAtgtcccggggggggcacttaggcaaaaatagatacggggacgtgccg
ctggtcagggtacctttttcagtgttgcagaattactgacagggtatcta
aaattgcaaaattctgatctgacaggggcgcaatttcatgatgtgcgtct
gacagggtctgtttttgccgtttttgcatgtagagttcttttgcaaatcg
ttttgacgcggcggtgagcagactcctgcgaggggcaaacagctttttgc
aaatacttatcgCACAGCCAACACAGGCGCTTTGCTGCTGTTGTCTCGCA
CCACACGCCCGCCATTGCGCCCTCTTAAAGGGATCGAGGTTATTTTCAAA
GATACCTCTATTGAACTATTTAGAATAAATGTTCAGCTGAATAGTGGTAC
TAACAACATTGtttccggaaattttttttgaaaattgtattcTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021970XLOC_021970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037147-exon-sc0001580-1491911889:15645..15778TCONS_00037147-exon-sc0001580-1491911889:15645..15778Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1510915933:15645..15778TCONS_00037147-exon-sc0001580-1510915933:15645..15778Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1575043694:15645..15778TCONS_00037147-exon-sc0001580-1575043694:15645..15778Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1491911889:15872..16074TCONS_00037147-exon-sc0001580-1491911889:15872..16074Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1510915933:15872..16074TCONS_00037147-exon-sc0001580-1510915933:15872..16074Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1575043694:15872..16074TCONS_00037147-exon-sc0001580-1575043694:15872..16074Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1491911889:16392..16562TCONS_00037147-exon-sc0001580-1491911889:16392..16562Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1510915933:16392..16562TCONS_00037147-exon-sc0001580-1510915933:16392..16562Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1575043694:16392..16562TCONS_00037147-exon-sc0001580-1575043694:16392..16562Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1491911889:17234..17367TCONS_00037147-exon-sc0001580-1491911889:17234..17367Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1510915933:17234..17367TCONS_00037147-exon-sc0001580-1510915933:17234..17367Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1575043694:17234..17367TCONS_00037147-exon-sc0001580-1575043694:17234..17367Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1491911889:17694..19590TCONS_00037147-exon-sc0001580-1491911889:17694..19590Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1510915933:17694..19590TCONS_00037147-exon-sc0001580-1510915933:17694..19590Clytia hemisphaericaexon
TCONS_00037147-exon-sc0001580-1575043694:17694..19590TCONS_00037147-exon-sc0001580-1575043694:17694..19590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001580supercontigsc0001580:15645..19590 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.00578	2.92276	1.67672	0.0378756	11.8496	9.67484	11.1795	20.559	22.4457	27.5751	17.9295	16.1529	16.0783	17.3268	0	0	0.41713	0.461444	0	0	0	0	2.32173	1.60811	3.32156	12.1956	0	0	1.21187	1.63734
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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