XLOC_021970 (gene) - C. hemisphaerica

Overview
NameXLOC_021970
Unique NameXLOC_021970
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001580:11834..19590+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_021970 ID=XLOC_021970|Name=XLOC_021970|organism=Clytia hemisphaerica|type=gene|length=7757bp|location=Sequence derived from alignment at sc0001580:11834..19590+ (Clytia hemisphaerica)
gaaaattcaaaaaaatagaaaaaaaccggtaagtgtaaaccgcaggttac
aggttgcaggttacaggtcacaggttacaggttacaggtcacaggtcagt
gttggtCAGCTTTAATTAcagtaaaacacaaagaaaatgtttgaaaaaca
gttgttgatgtcaaaaatataattcccaaggtattttattgatctagaac
tattttaaagctaaaaatctacccacGTGTTTACCATGTGATtaccttga
aaagcttttttagaaaaatcaaaaactccgacgGGAGTTGAAATGCCGTT
CGATAATGTGAGGTTTTCaatcacagacttgcaccgcaatggactgtgtt
cgaaaCCTAAGCACTTACAGACAGGCTGATAGAGAAACATGGTGATAAAT
CTCTAGTTAGGGTTATATCAATGTGAATTGGCTGgacattttctttgaaa
ggAGGAAGGTGATGTTGGTCAGCAACTTGATTATCTTACTCATAAAACTT
gcaagtttttttctttatttttccagTGAATTTGAATACCGTATGATGAA
ACGAGCTTCAGGAGAATCTGTTGAAGAAGAAATGGAGAAGGTTCGAAGCA
GGAAAGTTCTTGGCGTCCTCAAACCTATGAAGTCTGGAAAAGTTAGCAAT
GACCGAATGAAAAACCaaagtaaaatttcatttctctcCATTATATGTGT
TTTAACCCTCAAATTGTTTTAAGGAGGTTCTCTTTGACAAAATTACCTCA
TTTATATTTTAGGCTCAAGAACAAAGCTTGGCTCTTTGACCTCTTCTTCA
CGGCAACCAAGTGGAAATAGACAATCGGGAGGATTCCAAATTTACGGAGA
CGAATCGAACCCTGGTATGTTGTCATCGGCAACCGGTCAATTGAAAAGCA
ATCCTTTGGATCCCACCAATAATAGGGAGAATGTCAAACAGATGCAAAGA
GTGAAAGGAACAAAAGTAAGTGAATcataacttttatcaaaatgtaGAAG
CTATATTTGACATTTACCCTTTCAATACCTTGTGCCGTGTAGATTTCAAG
AGATTTCAATCTGAGCCGTTATCAATTGACAATGGATTTGAAAAATTGCG
GAGCTTTAACTCTTAACTTTTTCCTCTTCAAAATGATCCTATAGAGTAGC
TTTAGATCATTAATGTGATTTAATAGTTGATATTGGTAATTTGCAGGTAT
TTTCAGTTTAAGTTGGTAGAACACTTGATTCTTAATTGTTCAATTTCATA
TTTAGCTAAGTTTTCTTATTGGTTATTTGCAGGTAAAAGGAGGGTCAGTT
TCATCTGGAGCATGCGCGTTTGAGATTTTCAAAGACGAAGAACAAAATAC
TGAAATTCATGCTGCCACACCCAAAGAGATCGTCGTCAGCTCAAGAAAAC
CATTGAGTTCGAAGAAACGTGAAGAAGTTCAAGATCCTTTCTACAGCAAA
ACTGTAAGTCAAGTTTTCTTTCTAAGGTGTAGAGGCTTTAAACCTTAAGC
TAGATAAAtgagagtcgatattttacgtgggtTATCTCAGACTTTCAGAT
AGTTTTTCGACCAACCGTCTCGGCTATCTAATAACCGAACGGAGCATTCG
AAGGAGTGGTGATTCGAACCTTTTCAACATCGACATCTTTGACCGTTCGG
CTGTCGTcttaagagagagagagagagagaaaaaactATAATTCTCCCCG
AGCATCACATACACAAAATTTTAATGACCTTTGATACACATTGAGTAACG
ATCTGTGCAAAGCAAAGCGCATTTGACCTCTCTTGTGATAATTGACTgat
ttgaaaatgataaaaaattttaaccCTTAGCGTATCCGCCCGTTGCACGA
GCATGCATTAATTTtgactttctttcaaaatattaaataGTACAGAAAAT
TTTGTACATGGGATACGCTtgcttttcaaagattttgaatgtTCCTTCTT
TTGCTACGATTCTTCTTTGtcaatctcttttcaaaacactcATACCAACT
CTCAGCTATTAAGTTTCGGAAGATTCCCCTTCCATCCTGCGTACTCTCCA
GTTGTTTAGCTACCCGAGGCATTCgaacaatatttcaaaaatatgcaCAA
CACAAATCAACTTCTTCTGTATAGATTGACGATCCGAAAGTGATCCACAA
ATATTGCAAAAATGTCATTAACATGGGAACAAGAGAGATTTCATTCGAAG
AAATCAAAGCGCAACTCCCAAGATATGACATGTTGAAGAAGAAAGCTACT
GAACAAAGGTATTACAAATCGATTCTATTTAACTTATTTAGGTACGCTTT
TTAAACCGATTCTACTTTCAAACCGGTGTTTGTNNNNNNNNNNNNNNNNN
NNNNNagaaagaaaaaggaaagaaagaaatgagaagaaaattaattcccg
ctttgatgttattatcgaaacaaaaggatcagtcaagccgaaattccttt
ccacacgtcagcaatctactttttataaatagaaaaactagattgtaagg
aagatactaaaaaaaatagctgttttcttagacgactaCGTTAACTTTAA
ACACCCATGAGATTAAAGAAACCTCATTATTATTGTTTTCTTAGCACCGA
AACATTGCAGATTTGTTATTTCATATTGAAACAACCGTTGCTTGCGCAGC
CCACATATTTTTGCAGACGGCCGTTTTATTCTGTCGCTTtatattatgga
gataaaaatTCCAGGATTATTGgtgaaaaagtttagaaattatctctgat
attttttaaatgtaaatgcGAGCCgtagcaaaaataaaaatagctgACGA
AACAACAATGGAATATTTACAGCGAGCAATGGGAGAagggttgaatattt
tgaaatcaaGTTTGATTGCCACAGTCTACGTTATTTGGGGTAGGGGTTGG
AAATCAAAACGTCTGACGTTTTCCGTAGCAAGTCTGAGTTTGGAAGGCTC
TACTAAGGTTGGTCGAAAAAAGGCTGCTCTACCATATGTATAAACAATAT
AAATTTGTTATTAAGAAACTCTGTGGTGCAACCTTAAAATTACTCTGATT
GCCTCAACGGCTAAATTTTTAAGTAACCCCGAATCATTTAAAAAGTAGCC
TGTCGCAAGTcggggactccagattgcattacatttttgttgggtttttg
agtggtttttggtgtttgtgtttctGCTTGGCGTTTTAAACTTTGGTCTA
TTGggttgttggttctttttcgcataaaattctcatttcttgacagaatg
tttgattagtttgatttatatatttagaaaattcaaaaaaatagaaaaaa
accggtaagtgtaaaccgcaggttacaggttgcaggttacaggtcacagg
ttacaggttacaggtcacaggtcagtgtttgTCAGCTTTAATTAcagtaa
aacacaaagaaaatgtttgaaaaacagttgttgatgtcaaaaatataatt
cccaaggtattttattgatctagaactattttaaagctaaaaatctaccc
acGTGTTTACCATGTGATtaccttgaaaagcttttttagaaaaatcaaaa
actccgacgGGAGTTGAAATGCCGTTCGATAATGTGAGGTTTTCaatcac
agacttgcaccgcaatggactgtgttcgaaaCCTAAGCACTTACAGACAG
GCTGATAGAGAAACATGGTGATAAATCTCTAGTTAGGGTTATATCAATGT
GAATTGGCTGgacattttctttgaaaggAGGAAGGTGATGTTGGTCAGCA
ACTTGATTATCTTACTCATAAAACTTgcaagtttttttctttatttttcc
agTGAATTTGAATACCGTATGATGAAACGAGCTTCAGGAGAATCTGTTGA
AGAAGAAATGGAGAAGGTTCGAAGCAGGAAAGTTCTTGGCGTCCTCAAAC
CTATGAAGTCTGGAAAAGTTAGCAATGACCGAATGAAAAACCaaagtaaa
atttcatttctctcCATTATATGTGTTTTAACCCTCAAATTGTTTTAAGG
AGGTTCTCTTTGACAAAATTACCTCATTTATATTTTAGGCTCAAGAACAA
AGCTTGGCTCTTTGACCTCTTCTTCACGGCAACCAAGTGGAAATAGACAA
TCGGGAGGATTCCAAATTTACGGAGACGAATCGAACCCTGGTATGTTGTC
ATCGGCAACCGGTCAATTGAAAAGCAATCCTTTGGATCCCACCAATAATA
GGGAGAATGTCAAACAGATGCAAAGAGTGAAAGGAACAAAAGTAAGTGAA
TcataacttttatcaaaatgtaGAAGCTATATTTGACATTTACCCTTTCA
ATACCTTGTGCCGTGTAGATTTCAAGAGATTTCAATCTGAGCCGTTATCA
ATTGACAATGGATTTGAAAAATTGCGGAGCTTTAACTCTTAACTTTTTCC
TCTTCAAAATGATCCTATAGAGTAGCTTTAGATCATTAATGTGATTTAAT
AGTTGATATTGGTAATTTGCAGGTATTTTCAGTTTAAGTTGGTAGAACAC
TTGATTCTTAATTGTTCAATTTCATATTTAGCTAAGTTTTCTTATTGGTT
ATTTGCAGGTAAAAGGAGGGTCAGTTTCATCTGGAGCATGCGCGTTTGAG
ATTTTCAAAGACGAAGAACAAAATACTGAAATTCATGCTGCCACACCCAA
AGAGATCGTCGTCAGCTCAAGAAAACCATTGAGTTCGAAGAAACGTGAAG
AAGTTCAAGATCCTTTCTACAGCAAAACTGTAAGTCAAGTTTTCTTTCTA
AGGTGTAGAGGCTTTAAACCTTAAGCTAGATAAAtgagagtcgatatttt
acgtgggtTATCTCAGACTTTCAGATAGTTTTTCGACCAACCGTCTCGGC
TATCTAATAACCGAACGGAGCATTCGAAGGAGTGGTGATTCGAACCTTTT
CAACATCGACATCTTTGACCGTTCGGCTGTCGTcttaagagagagagaga
gagagaaaaaactATAATTCTCCCCGAGCATCACATACACAAAATTTTAA
TGACCTTTGATACACATTGAGTAACGATCTGTGCAAAGCAAAGCGCATTT
GACCTCTCTTGTGATAATTGACTgatttgaaaatgataaaaaattttaac
cCTTAGCGTATCCGCCCGTTGCACGAGCATGCATTAATTTtgactttctt
tcaaaatattaaataGTACAGAAAATTTTGTACATGGGATACGCTtgctt
ttcaaagattttgaatgtTCCTTCTTTTGCTACGATTCTTCTTTGtcaat
ctcttttcaaaacactcATACCAACTCTCAGCTATTAAGTTTCGGAAGAT
TCCCCTTCCATCCTGCGTACTCTCCAGTTGTTTAGCTACCCGAGGCATTC
gaacaatatttcaaaaatatgcaCAACACAAATCAACTTCTTCTGTATAG
ATTGACGATCCGAAAGTGATCCACAAATATTGCAAAAATGTCATTAACAT
GGGAACAAGAGAGATTTCATTCGAAGAAATCAAAGCGCAACTCCCAAGAT
ATGACATGTTGAAGAAGAAAGCTACTGAACAAAGGTATTACAAATCGATT
CTATTTAACTTATTTAGGTACGCTTTTTAAACCGATTCTACTTTCAAACC
GGTGTTTGTGTGAAAACGTCGTGGGTAAAGCATTTTGGATCGCAAATAAG
GGCTTCATTTTCCATCTAAGGGATTCCTCTCGTTAAAATCAATGAAAAAT
ATGTTTCTAATATACAAAGTTATTTTAGCTATCTGTGTTTTATTTAAGCC
AGCTCAAAGATAGCGTTTTAACCGAAGTTTCCGAATATGTAGGCATATAC
AGCATTACTTTTAACACATCTTAGCCATCCGAAGCAACATATCGAACATT
TTACTTTTAGACCAAAAATAGTGCGATCAGCCTTGGACTTTGGTCACCAA
GCAGCAACAAGATCCCTTACACCAGAACCGACAGAACAAATACTGCCAGG
AACACCACAAGAACCAGCAATTAACCGTACACCATCCAGTGCTAAGAACA
ACAACATTGGTGATATTTTGCAGAACCTCGAAGATGAATTCAACTCGCCC
ATTGAAAGTACTGGTTATTATGGACCACGGAAAACCAAACAACCAGATAT
TACGGGAATCACTGAAATCTTCTCCAATAATCTCCAAGACCAAGAGGATT
TGACATGCAAGATGCAAGAGTTGGATAGGACTGAACAGTTTGGTAGATTT
CCCACTACTGCTACAGTAAGAAAGCAAGGTGAAATCGATAATACATTCAA
ATTTTAGGGACTGGGACGAACAACTTTGGATgcaaatattcttaattttg
atCAACGGTGCGGAACAAATAAACTTATTAATCAATCACTTACAACAGAT
ATTATCCGAACCTTCATTCTTGGAGCAATTAGATGCGGCTATTCTGCGGA
AAGAAGACTTGCTTATGGAAGACGACTAGTGGTGAATCATTGGGTTTTAG
TTTTGTAGAATGAAGTTACATGTTGCAACGGAGACAATTGCCCATTCTCC
TCTTTATACGTATGAGAAGGAATAAACAAATTCATGAACGTTCTGGATCC
ACTACGGTGTTGTTTGATGGATGATTGACAGTAACGGCTAAACTTATTTC
CATTCAAATGACTAGAAGAAAAATTGCAACACCTGCTCATCTTCACAAAA
AGGTACTCATAGGGCATTATTTGGAAGtagcaaatgtcaaattttctgta
atatttaaatttcaaaattaagccTTCAAACTCCTTCCAATATACGTAAA
GCATTTTGACTGCACTTCAGTTCAATCTTTCAAAAGTATAAAGTCTCCAA
ATAGACTAAACGATGAATTATCTTATGTTATCGAGATCGAGGAGAAAAGT
TTTCAGATATCTGCAAATGATTCAGCAAAGAATGTTTTTACCTTGTTCAC
CGTTTGAACCCTCATCATTCTTGGCGACTGGAATATTTTTTTACCTGTAT
CTTTTCTAATATTTTACTGTTGTTAATTCACATATATTATATGTtagtta
tgttttttttttgttattttatgaaAGTATATACAGAGTGTCTGGAAATG
AGCGTGGAACAGGATCTTTTAATAGAACTCCTCAAAACCCATACTATACC
CATATAATACTTGGTTTGAATATCTATAGATGAAGCTTGGTTTACATCTT
TTTGAGTAAAAACAATATTCTCCATATACATATGCGAGAGTTTATGTAGC
ATCTTTGCCACTCATTGTTTTTAATATGTATTCCGCTCCCACTTTTTTTA
CGGACAAACTGTACAGTATTTGATGATGAAACACAAATatcatttaaagg
ttttagtGTACATAtgtcccggggggggcacttaggcaaaaatagatacg
gggacgtgccgctggtcagggtacctttttcagtgttgcagaattactga
cagggtatctaaaattgcaaaattctgatctgacaggggcgcaatttcat
gatgtgcgtctgacagggtctgtttttgccgtttttgcatgtagagttct
tttgcaaatcgttttgacgcggcggtgagcagactcctgcgaggggcaaa
cagctttttgcaaatacttatcgCACAGCCAACACAGGCGCTTTGCTGCT
GTTGTCTCGCACCACACGCCCGCCATTGCGCCCTCTTAAAGGGATCGAGG
TTATTTTCAAAGATACCTCTATTGAACTATTTAGAATAAATGTTCAGCTG
AATAGTGGTACTAACAACATTGtttccggaaattttttttgaaaattgta
ttcTTTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00037143TCONS_00037143Clytia hemisphaericatranscript
TCONS_00037144TCONS_00037144Clytia hemisphaericatranscript
TCONS_00037145TCONS_00037145Clytia hemisphaericatranscript
TCONS_00037146TCONS_00037146Clytia hemisphaericatranscript
TCONS_00037147TCONS_00037147Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00037143-proteinTCONS_00037143-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001580supercontigsc0001580:11834..19590 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.4	4.8	3.27	3.05	27.05	27.72	40.57	61.09	35.33	43.03	32.68	28.97	29.48	32.53	2.19	2.82	3.1	2.97	1.28	1.72	2.87	2.56	4.1	4.08	13.47	35.29	2.24	1.82	3.31	4.27