TCONS_00037139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037139
Unique NameTCONS_00037139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037139 ID=TCONS_00037139|Name=TCONS_00037139|organism=Clytia hemisphaerica|type=transcript|length=563bp
ATCCTTaaatactttctgtaattccATTCTCTATCTAATTATTTCAGAGT
AAAATTCCTGTTCGAGTTTGTGTTACTGTAAATTACCCTATTTTTATTTA
CCAACTGCTCCTACACGGAAGATTTCCAGATAAAGAACCGAAACTTTGCT
TGGAGGGTGAAGTGAACAGTGGAAAGGCTTGATGGCCCCATTTGAAGGAA
TCATTTCCCAAGATCATATTGCTGGTATTGTGGCAGTAGGAAGGTTTTCT
GGACATTTGATAAACAATGACACTCAATTAGTTTTCATGGATGAATGGTC
TTCAGATTCTCTTTCCTTTTCTGATGCGAAAAGAATATTGCAGGGTGGAT
TCTTCATGTTATCACAAAAGCATAGCAAAGCAACGAAGGTCAATTACAGA
TCGGGGTTTTTCATAACCACAAATAAAATACCAGACTTTGTCAATGATCG
GGATaatgaagcgatcaaaaaacGACTTGAAACGTTCCAAACAAAGCCAT
TGCCGAGAAAGGATTCATACCTTAGAAACTGGATGAGACTTCActgtatg
aaaatattttaat
Run BLAST on NCBI

protein sequence of TCONS_00037139-protein

>TCONS_00037139-protein ID=TCONS_00037139-protein|Name=TCONS_00037139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MAPFEGIISQDHIAGIVAVGRFSGHLINNDTQLVFMDEWSSDSLSFSDAK
RILQGGFFMLSQKHSKATKVNYRSGFFITTNKIPDFVNDRDNEAIKKRLE
TFQTKPLPRKDSYLRNWMRLHCMKIF
Run BLAST on NCBI

transcript from alignment at sc0001579:39804..40893-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037139 ID=TCONS_00037139|Name=TCONS_00037139|organism=Clytia hemisphaerica|type=transcript|length=1090bp|location=Sequence derived from alignment at sc0001579:39804..40893- (Clytia hemisphaerica)
ATCCTTAAATACTTTCTGTAATTCCATTCTCTATCTAATTATTTCAGAGT
AAAATTCCTGTTCGAGTTTGTGTTACTGTAAATTACCCTATTTTTATTTA
CCAACTGCTCCTACACGGAAGATTTCCAGATAAAGAACCGAAACTTTGCT
TGGAGGGTGAAGTGAACAGTGGAAAGGCTTGATGGCCCCATTTGAAGGTA
TACATATACAAATTCCTGAACTTTATTCCCAGTCGATTTCTGTCAATACC
CTAACCTTATTAGATTGTTTTTGCTCTGAAATTTCTTAGCCTTTTTCATA
TAATAAGAACAGGACAAAGTTAGCACATCAACAATCAAATAGTCATTACT
ACAATTTGCTTTTTTCTGTTAAGGAATCATTTCCCAAGATCATATTGCTG
GTATTGTGGCAGTAGGAAGGTTTTCTGGACATTTGATAAACAATGACACT
CAATTAGTTTTCATGGATGAATGGTCTTCAGATTCTCTTTCCTTTTCTGA
TGCGAAAAGAATATTGCAGGGTAAGCCAGCTAAAACAATCTCACCGGGAT
AGAGTGATATCGTAACTGAACGAATTTCGACAATGTCATGCTTTACATGT
AAATTCACATACTAATTTCACATACGTACACGATTATTTATTTTTCTAAA
ATTGTAAAACTATATCTTGGATTTTTCAGGTGGATTCTTCATGTTATCAC
AAAAGCATAGCAAAGCAACGAAGGTCAATTACAGATCGGGGTTTTTCATA
ACCACAAATAAAATACCAGACTTTGTCAATGATCGGGATAATGAAGCGAT
CAAAAAACGACTTGAAACGTTCCAAACAAAGCCATTGCCGAGAAAGGATT
CATACCTTAGAAGTAAGTGTACATAAATGAAATTAATTGTCAAACTAATT
TCTTATTTATTTTTTACTTAACTTTACTTAACTTATCTTAATTAGCATAG
TTAATAGAAATTCACCCTGGAAAAGTTTGAAAATCTATATATGGTTGACT
GACTAACTGTTCACTTTGCTCAATCTATAACAAAGTTTTGTTTCTTGTCA
ATAGACTGGATGAGACTTCACTGTATGAAAATATTTTAAT

Coding sequence (CDS) from alignment at sc0001579:39804..40893-

>TCONS_00037139 ID=TCONS_00037139|Name=TCONS_00037139|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0001579:39804..40893- (Clytia hemisphaerica)
ACTGGATGAGACTTCACTGTATGAAAATATTTTAAGTGGATTCTTCATGT
TATCACAAAAGCATAGCAAAGCAACGAAGGTCAATTACAGATCGGGGTTT
TTCATAACCACAAATAAAATACCAGACTTTGTCAATGATCGGGATAATGA
AGCGATCAAAAAACGACTTGAAACGTTCCAAACAAAGCCATTGCCGAGAA
AGGATTCATACCTTAGAAGAATCATTTCCCAAGATCATATTGCTGGTATT
GTGGCAGTAGGAAGGTTTTCTGGACATTTGATAAACAATGACACTCAATT
AGTTTTCATGGATGAATGGTCTTCAGATTCTCTTTCCTTTTCTGATGCGA
AAAGAATATTGCAGGATGGCCCCATTTGAAGACTGGATGAGACTTCACTG
TATGAAAATATTTTAAGTGGATTCTTCATGTTATCACAAAAGCATAGCAA
AGCAACGAAGGTCAATTACAGATCGGGGTTTTTCATAACCACAAATAAAA
TACCAGACTTTGTCAATGATCGGGATAATGAAGCGATCAAAAAACGACTT
GAAACGTTCCAAACAAAGCCATTGCCGAGAAAGGATTCATACCTTAGAAG
AATCATTTCCCAAGATCATATTGCTGGTATTGTGGCAGTAGGAAGGTTTT
CTGGACATTTGATAAACAATGACACTCAATTAGTTTTCATGGATGAATGG
TCTTCAGATTCTCTTTCCTTTTCTGATGCGAAAAGAATATTGCAGGATGG
CCCCATTTGAAGACTGGATGAGACTTCACTGTATGAAAATATTTTAAGTG
GATTCTTCATGTTATCACAAAAGCATAGCAAAGCAACGAAGGTCAATTAC
AGATCGGGGTTTTTCATAACCACAAATAAAATACCAGACTTTGTCAATGA
TCGGGATAATGAAGCGATCAAAAAACGACTTGAAACGTTCCAAACAAAGC
CATTGCCGAGAAAGGATTCATACCTTAGAAGAATCATTTCCCAAGATCAT
ATTGCTGGTATTGTGGCAGTAGGAAGGTTTTCTGGACATTTGATAAACAA
TGACACTCAATTAGTTTTCATGGATGAATGGTCTTCAGATTCTCTTTCCT
TTTCTGATGCGAAAAGAATATTGCAGGATGGCCCCATTTGAAGACTGGAT
GAGACTTCACTGTATGAAAATATTTTAAGTGGATTCTTCATGTTATCACA
AAAGCATAGCAAAGCAACGAAGGTCAATTACAGATCGGGGTTTTTCATAA
CCACAAATAAAATACCAGACTTTGTCAATGATCGGGATAATGAAGCGATC
AAAAAACGACTTGAAACGTTCCAAACAAAGCCATTGCCGAGAAAGGATTC
ATACCTTAGAAGAATCATTTCCCAAGATCATATTGCTGGTATTGTGGCAG
TAGGAAGGTTTTCTGGACATTTGATAAACAATGACACTCAATTAGTTTTC
ATGGATGAATGGTCTTCAGATTCTCTTTCCTTTTCTGATGCGAAAAGAAT
ATTGCAGGATGGCCCCATTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021966XLOC_021966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037139-exon-sc0001579-1575043694:40697..40893TCONS_00037139-exon-sc0001579-1575043694:40697..40893Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1575043694:40374..40520TCONS_00037139-exon-sc0001579-1575043694:40374..40520Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1575043694:40032..40214TCONS_00037139-exon-sc0001579-1575043694:40032..40214Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1575043694:39804..39839TCONS_00037139-exon-sc0001579-1575043694:39804..39839Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1510915933:40697..40893TCONS_00037139-exon-sc0001579-1510915933:40697..40893Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1510915933:40374..40520TCONS_00037139-exon-sc0001579-1510915933:40374..40520Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1510915933:40032..40214TCONS_00037139-exon-sc0001579-1510915933:40032..40214Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1510915933:39804..39839TCONS_00037139-exon-sc0001579-1510915933:39804..39839Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1491911889:40697..40893TCONS_00037139-exon-sc0001579-1491911889:40697..40893Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1491911889:40374..40520TCONS_00037139-exon-sc0001579-1491911889:40374..40520Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1491911889:40032..40214TCONS_00037139-exon-sc0001579-1491911889:40032..40214Clytia hemisphaericaexon
TCONS_00037139-exon-sc0001579-1491911889:39804..39839TCONS_00037139-exon-sc0001579-1491911889:39804..39839Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037139-proteinTCONS_00037139-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001579supercontigsc0001579:39804..40893 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.80615	2.54098	2.26948	1.22118	7.43335	6.40792	11.9829	13.872	6.75625	10.6701	9.54437	8.87718	8.46492	6.71431	4.66646	4.27497	3.91219	4.08698	8.30978	10.0334	6.39527	5.24624	4.94112	6.99947	6.77889	8.64285	5.9091	5.57306	3.67079	3.39996
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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