TCONS_00037123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037123
Unique NameTCONS_00037123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037123 ID=TCONS_00037123|Name=TCONS_00037123|organism=Clytia hemisphaerica|type=transcript|length=227bp
TGCTGGAAAACGGTGACCAAGACGTTGgtttaaagctttttaatggAACA
ACTGAAGTATGGACCCAACGGACGGGTAAAGTTAGTGATGCAGGAAAAGC
ACTCTTCAAAGACAGATTGACCGTCGAGAAAAGTGTCACCTACCTAAAAG
CTACAATCAAAAATGTGGATTTCAATGATTCTACAATAGAATTGAGAATT
ACAGGGGCTATTATAGACAGCGGCTTT
Run BLAST on NCBI

transcript from alignment at sc0001573:40857..41083

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037123 ID=TCONS_00037123|Name=TCONS_00037123|organism=Clytia hemisphaerica|type=transcript|length=227bp|location=Sequence derived from alignment at sc0001573:40857..41083 (Clytia hemisphaerica)
AAAGCCGCTGTCTATAATAGCCCCTGTAATTCTCAATTCTATTGTAGAAT
CATTGAAATCCACATTTTTGATTGTAGCTTTTAGGTAGGTGACACTTTTC
TCGACGGTCAATCTGTCTTTGAAGAGTGCTTTTCCTGCATCACTAACTTT
ACCCGTCCGTTGGGTCCATACTTCAGTTGTTccattaaaaagctttaaac
CAACGTCTTGGTCACCGTTTTCCAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021955XLOC_021955Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037123-exon-sc0001573-1491911889:40857..41083TCONS_00037123-exon-sc0001573-1491911889:40857..41083Clytia hemisphaericaexon
TCONS_00037123-exon-sc0001573-1510915933:40857..41083TCONS_00037123-exon-sc0001573-1510915933:40857..41083Clytia hemisphaericaexon
TCONS_00037123-exon-sc0001573-1575043694:40857..41083TCONS_00037123-exon-sc0001573-1575043694:40857..41083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001573supercontigsc0001573:40857..41083 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.43209	3.24149	2.50912	1.22739	8.36636	9.87891	11.8248	7.99324	16.603	11.7203	19.9146	12.4989	13.766	18.294	26.0393	20.8123	12.0046	19.7514	20.4777	17.0179	2.1426	1.56763	6.12551	5.73686	0	0	7.59659	3.24292	8.60873	3.75897
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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