TCONS_00037117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037117
Unique NameTCONS_00037117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037117 ID=TCONS_00037117|Name=TCONS_00037117|organism=Clytia hemisphaerica|type=transcript|length=517bp
GAAAACTGGAGCAAAAAGTGTAGTTTGGTTTACTAAAACCACTACAACGA
CCACGACAACAACGACGACAATAAAACCAGGGATCCTAACAACTTCAGTG
CCAAGTGCAACTAAAGATGAAAAAGGGTTATGGCTTGGAATAGGCATTGT
CATCGGGTTGGTTATTGGGCTATTACTAGCTCTGGTAATCTTTCATATTT
TGCGTTTTTACCAGAGACAAAACAATACCAAAGGAAATCAACCCAATGAA
CTGACGGAGAAAGGACCAACTTATGAAGGTGTCAACGACAATGTTTTTGT
GAATACAGAGTCGCCTAATGAACAGgATTATGAGTTTGTTGCAGATCATG
GGAATTCAAAGAGAGCGAACGCTGCAACCTATCAAGAACTCAATGCTATA
TCACCGCCAGATTTGACTTACACCAAACTTCAAGGAAAATCACATTACGA
AATATAATAGAAATATCAAGAGAAAATTACATCCTTTTTTTAGGCTTTAC
ATAGCTTTACGGTCGAA
Run BLAST on NCBI

transcript from alignment at sc0001573:29741..35416-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037117 ID=TCONS_00037117|Name=TCONS_00037117|organism=Clytia hemisphaerica|type=transcript|length=5676bp|location=Sequence derived from alignment at sc0001573:29741..35416- (Clytia hemisphaerica)
GAAAACTGGAGCAAAAAGTGTAGTTTGGTTTACTAAAACCACTACAACGA
CCACGACAACAACGACGACAATAAAACCAGGGATCCTAACAACTTCAGTG
CCAAGTGCAACTAGTATGTATACTGTGTGTCCTTGAGATAAACATCGAAA
AGAGAAAAATAATTAAAGACAAAGAAATCGAAAACTGGTTAAATGGAAAA
TTTGCAAATTATTATGATGAGTTTTATAGTCGGGGAGAGGCTAAAACTGC
AATGTTTTTTCTTTGTACACATTTTTTTTAATGATGATACAGGAAAATTA
AAACCATTTTCAAAATCTTCTGTTTTTCTAGAAGATGAAAAAGGGTTATG
GCTTGGAATAGGCATTGTCATCGGGTTGGTTATTGGGCTATTACTAGCTC
TGGTAATCTTTCATATTTTGCGTTTTTACCAGAGACAAAACAATACCAAA
GGTAAGCAAGAATTTATGACAAATTTGTAGTTTCAAGCATAATATACTTA
TTTTCAATGAACACGAGCCCAAACTCCAACCTTACTACACATCGGTATTA
TATCTGTCAATATTTTTAACTTTGACGTTTGCTGTTCATCTAGGAAATCA
ACCCAATGAACTGACGGAGAAAGGACCAACTTATGAAGGTGTCAACGACA
ATGTTTTTGTGAATACAGAGTCGCCTAATGAACAGGTACACATTGATTGT
ATATCTCAATAGTTGAATAAATATTCCAATGGGAGCTCTTTTATCTAAAA
TGAAAATATTGATATTCGTTTGTCATGAGCTGCAACATTTGCTCGTCTAT
AAGCTTTTTGCTCTGTAAAGATTGGCAAGACAAAGACAGTTTACGTATTA
GTGAGGGATGTTGCTTGTAGAACCATGAGCTCCATTTTCACCAAAGATAT
CCAGTAAAGAATCTATTATTCAGAACCGCTAGGCTTTAACTCCTATCACT
TCTTTTCCTGGATTGCCTCACTTAAGGCATGGGGACATGAGAAGTTTTTT
TTGCGTTGGTGCAATGCAACATGCTCCATCCCACCAACCTGAAACGCTTT
TTAATGTCGCTACATAGTACCGTGAAAAGCACAGGTCAAAATCATGTATT
GACACTGAGTCGACGAATCAATATTCTATTCATCGCGCAATCAACGAAGA
CAAAGCAACCATGACGACCATCCGAGATCTTGGATGAAGTTCAAAGTTGA
TATTTTTATTCCCGTCGTTGAAAACACAACTAAAAAATATCATCAATGCT
TTTTAAAAAGATTCAGTGATAGAGAATCATGACATGAAGTCTGTCTATTT
TATAGTGAAAAATGAAAAATATCTTTTTAGTTTTCCCAGGAGTAATCTTT
AACTAAAAATATAAATATTGATCTCCCCTTAAAAAATCTAATTTTAGGTG
GCAACACGACAGAAAAACACAATTTTCCGACGTGGGATAAAATTTCTCTC
ATTAATGTCCCTGGGACAATGGAGCAAAATCGATTCAAATCAATTTACTC
CATTTTCCCAGGGACAAAATCAGTGTCTTTTGGGTATTTCTCTTAAATTT
TGTCCCATGGACAAAAATTGAAACCATGGGACACGCACTTTTTTCTTATG
TTTGTGGGATGGAGCATGTTGCATTGTACCAACGCGAAAAAAACTTCTCG
TGTTCCCAAGCCTTTATCCTTAGTCCTTCCTTTTTATTACTAAGCATTGC
GCAAACAACCTTCAAAGTACCATTTTGTAAATAAAAGGTTTTATTTTCAC
ATAAGTGTTCTCGTTTCATATCTCGTTTCCTCTTTCTGAACAATTTTGCT
CCCCATTCGTATCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTGATG
ATTATGCAAATGATATCACTCTTTAAAAACAAAACCTTTAAGTATTGGTT
CAGTATGAATCCTCTCCATCTATTGTCCTGCCCAGGCTATGAACCTTCTG
AAATAACTTTTTGACATCGGTTGATATTCAACGGTACTCTAAAGTTTGGT
CACTAAAATTTGGAAAATTTTTCTAAATAACCCTTTAATTTATCATTTTT
TAGGATTATGAGTTTGTTGCAGATCATGGGAATTCAAAGAGAGCGAACGC
TGCAACCTATCAAGAACTCAATGCTATATCACCGCCAGATTTGACTTACA
CCAAACTTCAAGGAAAATCACATTACGAAATATAATAGAAATATCAAGAG
AAAATTACATCCTTTTTTTAGGCTTTACATAGCTTTACGGTCGAAAGGAA
AGAAATAAACGTAGCCTATAAATGTTATTGTCCCATTAGTTTTAAACAAC
TAATTAACGGATTGGCTAGTGAAGCAATTCTACATACTTTCTACCCTTTC
TCTGCGAATTCTGACTGAAATTATAATCTGCACGCAAAAGACAGTTCCGG
ATGGAAAAAATGCAATCATCCTTCACTGCCACTCAACTTCATCCATATCA
AGTGCGTTTGAAGTGTATATGATGTTTGACGAGGTACAGGGCATAACGAA
TTTGAATGCAGCCTGAAAAAACAATGAATTGATAATACTTATTAAATATT
TCCCTACTATAGGGGAATATTTGTTAAAACGGCTTTTTTCCGTTTCCTCC
TCCATTTTCGATGTTAATTTTTATTTATTATTATTATTAATATTATCTCT
TTTATCACCAATAATGGTATAAACTTTATTAATCGTTAATGTTTTCTTTG
TTCGTGCTGCGCATTATGACTAGGCACTTCAGTGACTAAAAACCATCGCG
AAGATTTAGCGGGGAAGCGTTTTTTTATATAGACGGGGTTTTGGGTTTTT
TCAAAAAATAGTATACATTCTTTTATCAAAATATGGCAGGGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTATCAAAATATGGCAGGGGTTTTTACCAGCTTTTCATAA
AACAAATGATTGTGTGTAAAGCTCAGAGGACTGCCTGAGTTTCTCTCGTG
TGTGCTGAATTCATTGTTTTTCCAAGTAAAATTCTACAGAGCTTTGAAAA
TCTTTTTAGTGATAACTTATTATAAACTCAATTTTTAAATATAGCACACC
TTAAGTATTATAGAACAAAAACTTAACTTTCCAAAAACAATAAACACTTT
ATATCCAGTGTATTAGAGAGACCAAGCCAAAGTTCAATATTGTGATTTTC
AAATTTCCAACATGACCTCCGTCCCGAAATCACTTTCGATTTGGCACGGG
TTTTTTGAGATTCCAGATCAAGAATAACAGTCAAGGACTATTGCAAACCA
GGACAAATTATCCTAAATAGGCTATAGAATATTTATCCTAGATAGGAGAC
TTCAAAAATCATCGGATTTGGCTGAAATTTGGCACACTTGTTCCTTGAGT
GAATATCATCCTTTTAGTGATGGTTTTCCCTTTAAGTTTTTTATTTTTAT
TCAATAGCTTAGTGCTTTGCGGGGGGGGGGGGGGGGCTTTTTTTTTTTTT
TTTTTAGTCTTTTTTTTGGGGTTTTTGGGGGGGGGGGGGGGTGAGCTATT
TATTTTTTCTGTGTTTGTTTTTGTAAGTAGTATATGTTCGTAAGTGTAAT
GTAGCTTCTCAAATCATATAGAAAAAAAAAAATATCTGAAAGGCTATTTT
TCATTTTTCAAAAATTTTGATTTTTGGGGCCTGGGGACAAGTTTTAAGCC
AAAACGAGGCTAAAACTTTAGAGCAGAGCCTACAGAAATGGTTGGAGTTA
GCTGAAATTTGGCACACTTGTTCCTTGGGTGAATATCTGGGGGTCTACAA
TTGGGCCTATGAATAATTTGAAGCCACTGAAGTTAAGCCCAGTGCTTTGC
GCACGTTCGACTATTAGTTAAATAAAATACATTTATTTTTGTGTTAAAAT
GATTATCATTTGCATGCAATTCTTTAAAAAGTTTTTTGACTTATATCATC
TGTGAATATGTCAATGAAATAACGACAATTTTTGCTTAATATAAAGGCTT
TTAATAAATCTATGTAACTAAGTTGGGGCTTTAGGATAATCTGTGGGGTT
CGACTGCGACTGCGACTACGATCTACGCTCTGAGCTATCGGGGGAAATAT
TTAACCACATCTTTGTGGCTCTTGTTTAAAGTACACTAAGTTAGCAATAT
TCCAACGAATTTTTCTTATGCATCTATTCAACAGTAACGGCGGTTGGCTT
TTAAAGAGACTGGAAACGGATTTAAGTAAATTCCAACCAAAATTGTTGAG
ACATTATATCCAAAGGCCATTCTAAGAGTGCAAATCATTTTCATCGTATT
CAAATAGTTTAACTATATTGACGTTACTTTTAACGCTTAAACGCAGGGGT
ATATTATATTTTTCGCAAGAGTACTCCTCCCTATGGGCATTCAACGTCTT
ATGGACATTCAATGGACGGCTTCAAGACCTTTGGACGTCCTAGAAACGTA
CATTAGACGTCCAAAAGACGTTTGTGCCCATTGGGCTACACTTATTTTTC
GATATCGTCTTCGAGAAGAATTTTCCTTGTATGTTTGTTACCAGTCTCCG
CTGACCACGCTGATAAGGGTTGATAGAACTTTGGTGTATATGTTAAGCTT
AAAATATATACAAAAATAAATGTTTTTGACATCATCGTAAAGACGATGAA
CATATATTGTAATTGACAATCCTTAAAAGGACATAAAAGCACTTGCAAAA
TTTGTAAAAAAACTATATGCAGCGGATACAAAATCAAAACAAATGTCACA
TGTCAAAATAAAAAATCAAACCAAAAATGGCTAATGAGAAGATTTTTTTC
GCGTTGGTGCAATGCAACATGCTCCATCCCACCAACCTGAAACGCTTTTT
AATATCGCTACGTAGTACCGTGAAAAGCACAGGTCAAAATCATGTATTGA
CACTGAGTTGACGAATCGATATTCTATTCATCGCGCAATCAACGAAGACA
AAAGTAACCGTGACAACCATCCAAGATCTTGGTAGAAGTTCAAAGTTGAT
ATTTTTATTCCCGTCGCTGAAAACACAAATAAAAAATGTCATCAATGCTT
TTTAAAGTCAGTGATAGAGAATCATAACATAAAGTCTGTCTATTATTTCG
ATTCAATTAAAAGTAACATTTCCATAATTAATACACCCCTGTCGGTAGAA
CTTTTTCCCTCCGCCTATTGTTATTATGCTGATATAAGCAAAAATATTTT
TCTTTTCCTCTTTCTAAACAATTTTGCTCCCCATTTGTATCAATCCAATG
TGAAAAACCTTGTGAATTAAAATTGATGAGTAAGCAAATGATATCACTCT
TATTTAAAAACGAAACCTTTAAGTATTGGTTCAGTATGAATCCTCTCCAT
CTATTGTCCTACCCAGGCTATGAACCTTCTGAAATAACTTTTTAACATCG
GTTGATATTCAACGGTGCTCTTAAGTTTGGTCACTAAAACTTGGAAAATT
TTTCTAAATAACCCTTTAATTTATCATTTTTTAGGATTATGAGTTTGTTG
CAGATCATGGGAATTCAAAGAGAGCGAACGCTGCAACCTATCAAGAACTC
AATGCTATATCACCGCCAGATTTGACTTACACCAAACTTCAAGGAAAATC
ACATTACGAAATATAATAGAAATATCAAGAGAAAATTACATCCTTTTTTT
AGGCTTTACATAGCTTTACGGTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021949XLOC_021949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037117-exon-sc0001573-1575043694:35304..35416TCONS_00037117-exon-sc0001573-1575043694:35304..35416Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1575043694:34966..35085TCONS_00037117-exon-sc0001573-1575043694:34966..35085Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1575043694:34732..34823TCONS_00037117-exon-sc0001573-1575043694:34732..34823Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1575043694:29741..29932TCONS_00037117-exon-sc0001573-1575043694:29741..29932Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1510915933:35304..35416TCONS_00037117-exon-sc0001573-1510915933:35304..35416Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1510915933:34966..35085TCONS_00037117-exon-sc0001573-1510915933:34966..35085Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1510915933:34732..34823TCONS_00037117-exon-sc0001573-1510915933:34732..34823Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1510915933:29741..29932TCONS_00037117-exon-sc0001573-1510915933:29741..29932Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1491911889:35304..35416TCONS_00037117-exon-sc0001573-1491911889:35304..35416Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1491911889:34966..35085TCONS_00037117-exon-sc0001573-1491911889:34966..35085Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1491911889:34732..34823TCONS_00037117-exon-sc0001573-1491911889:34732..34823Clytia hemisphaericaexon
TCONS_00037117-exon-sc0001573-1491911889:29741..29932TCONS_00037117-exon-sc0001573-1491911889:29741..29932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001573supercontigsc0001573:29741..35416 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0931873	0.107912	0.210963	0.217886	0.623414	0.503035	0.843582	0.316061	1.74642	1.90655	4.67281	3.05153	0.977822	1.74804	7.27144	5.19711	0.605816	0.208496	0.481359	0.92323	1.80372	2.38709	0	0.18635	2.21724	0.974144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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