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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037099 ID=TCONS_00037099|Name=TCONS_00037099|organism=Clytia hemisphaerica|type=transcript|length=1869bp
NNCCAAAGTTCAGTCAGTTCATCAGGAAAGACTTCGTCAACAAAGTCAGA
CAAGCTGAGAGATGTTACCATGAAGAAGGCCAGTGAGATCGCCAAACTAA
AACATCAGTTTTTAGAAGATAAATTTAAACTCGATCTTCAAATAATCAAG
TCGAACGCCAAACTCGAGAGAGACCAGATAGAGAACAAAGAGGAGGATAG
GAAGTCAGTCATTTCTCACCACTTTCCCATCAACCACAATCAATCAAAGG
AGCTTCACACTCGTTATGCTTCATCTCGTGCATCTTCAGTTTCATCCTTT
CGCCACTTACTCTTACCAAAGAAACGCTCTCTTGAAACCAAGATTCATCA
CACAGCCACTGCCAAAAGTTGTCATCAGAAGCAACCAGACAGTCAGCCAT
TGGAACAACCATCCATCAAAGCTACAAATAGTCAGCCATTGTCTCATCAA
CAACCATCGACACAGTTAAAGGCAAGTCACAGACAGGTCGAGCCTTGTGA
TGCATTTATTGATGAATTGATTGAATATAAAGAGACTGAGATTCCAGTAG
ACAATACGTTGGCATCTAGGGTGATCCAAGTAGAGTGCGAGTCAAGACAC
CTGCCACCTATTGAGTTGAAACGATTTGATGGTAGTTCGTTGCAATGGCC
AGAATTCATACAGAATTTCAAGTCCAGGATTCATTTGAAAAGTAGTTTTA
ATGACACTATTAGAATGGAAAGACTACTTAGTGTACTGGACGGACCAGCA
AGATCTTCTATTGAATCGATCGGAACCAATTCTATCTTCTACGCGACAGC
ACTGAAGGCCTTAAAACGTGATTATGGCAACCCTTACGTCATCGCTCATC
TCAAGCTGAAAGAAATGTTTGACAGACCTCAAATCACCATAACCGACCAT
GAAGGATTGAGAAACTTCTACCAACAGTTGAAGACAGCAATGGCATGGTT
CGAATCCATTGGCAACAGTAGCTACAACAATCCAGAAACCGTCGCCAAAG
CAGTATCTATCATTCCAATACAACACAAGTTCCGATTCTTTAATAGATAT
GGTAACGATCAACCCAAATTGACTGACCTCTACGTATTTGTCAACTGGCT
CGAATGTATCGTCAAAGAGTTGTTCAATCCCATTGCCATGATCATCAGTG
ATGAAAAAACGTCGAAGTCACCGAAAGACAAAGAAAGTAGAAACCTAAAA
TTTCGAAACAATTTCATCGGTAGGCAATTCAAATGCTGGCTGTGCTCCAA
AGaccacaaaatatcaaaatgtccAAAGATCCTCAATGCATCTACAGACG
ATCGACAGAAAATCGTGAGAGAAAAAGGACTTTGTTTCAACTGTTTCTCT
AACAATCATCTCATTAAAGAGTGTCCTTCCAAATTTACATGTACCAAGGA
CGAATGTGGTAAAAAACATCACACTTTGCTTCACAGAGATACAGCCACTA
CCACTGATACTCCTGGATCAGCAAAAAGTATGCAATGTTCTACTACCAAC
CAGACCTTCCTTCAAATTGTCCCTGTCGTATTATCAAATGGTAAATACAG
CATCAAAACCAATGCAGTCCTCGACTCTGGATCTGATAGTACCTTGATTC
GTGCTGATACCGCCGAGGCTCTACACCTATCCGGTAAGAAAGAAACTCTT
CAAATGTCGAACGTATTATCAAAGGAGACAAGTCTGCAATCAAAAAGAGT
CTGCTTCAATCTTGAATCACACGACAACAAAACCAAAGAGAAACTCGACA
ACGTTTGGGTAATTGAGAACCTTGACGTACCAGTAAATAGGTACGACATC
AATAAAGTGAAAACAGAATTTCAACACCTGAAAGACATTACATTTCCAAC
ACCTCATGATTCAGACGTC Run BLAST on NCBI protein sequence of TCONS_00037099-protein >TCONS_00037099-protein ID=TCONS_00037099-protein|Name=TCONS_00037099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
XQSSVSSSGKTSSTKSDKLRDVTMKKASEIAKLKHQFLEDKFKLDLQIIK
SNAKLERDQIENKEEDRKSVISHHFPINHNQSKELHTRYASSRASSVSSF
RHLLLPKKRSLETKIHHTATAKSCHQKQPDSQPLEQPSIKATNSQPLSHQ
QPSTQLKASHRQVEPCDAFIDELIEYKETEIPVDNTLASRVIQVECESRH
LPPIELKRFDGSSLQWPEFIQNFKSRIHLKSSFNDTIRMERLLSVLDGPA
RSSIESIGTNSIFYATALKALKRDYGNPYVIAHLKLKEMFDRPQITITDH
EGLRNFYQQLKTAMAWFESIGNSSYNNPETVAKAVSIIPIQHKFRFFNRY
GNDQPKLTDLYVFVNWLECIVKELFNPIAMIISDEKTSKSPKDKESRNLK
FRNNFIGRQFKCWLCSKDHKISKCPKILNASTDDRQKIVREKGLCFNCFS
NNHLIKECPSKFTCTKDECGKKHHTLLHRDTATTTDTPGSAKSMQCSTTN
QTFLQIVPVVLSNGKYSIKTNAVLDSGSDSTLIRADTAEALHLSGKKETL
QMSNVLSKETSLQSKRVCFNLESHDNKTKEKLDNVWVIENLDVPVNRYDI
NKVKTEFQHLKDITFPTPHDSDV Run BLAST on NCBI transcript from alignment at sc0001570:48680..50603- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037099 ID=TCONS_00037099|Name=TCONS_00037099|organism=Clytia hemisphaerica|type=transcript|length=1924bp|location=Sequence derived from alignment at sc0001570:48680..50603- (Clytia hemisphaerica)
NNCCAAAGTTCAGTCAGTTCATCAGGAAAGACTTCGTCAACAAAGTCAGA
CAAGCTGAGAGATGTTACCATGAAGAAGGCCAGTGAGATCGCCAAACTAA
AACATCAGTTTTTAGAAGATAAATTTAAACTCGATCTTCAAATAATCAAG
TCGAACGCCAAACTCGAGAGAGACCAGATAGAGAACAAAGAGGAGGATAG
GAAGTCAGTCATTTCTCACCACTTTCCCATCAACCACAATCAATCAAAGG
AGCTTCACACTCGTTATGCTTCATCTCGTGCATCTTCAGTTTCATCCTTT
CGCCACTTACTCTTACCAAAGAAACGCTCTCTTGAAACCAAGATTCATCA
CACAGCCACTGCCAAAAGTTGTCATCAGAAGCAACCAGACAGTCAGCCAT
TGGAACAACCATCCATCAAAGCTACAAATAGTCAGCCATTGTCTCATCAA
CAACCATCGACACAGTTAAAGGCAAGTCACAGACAGGTCGAGCCTTGTGA
TGCATTTATTGATGAATTGATTGAATATAAAGAGACTGAGATTCCAGTAG
ACAATACGTTGGCATCTAGGGTGATCCAAGTAGAGTGCGAGTCAAGACAC
CTGCCACCTATTGAGTTGAAACGATTTGATGGTAGTTCGTTGCAATGGCC
AGAATTCATACAGAATTTCAAGTCCAGGATTCATTTGAAAAGTAGTTTTA
ATGACACTATTAGAATGGAAAGACTACTTAGTGTACTGGACGGACCAGCA
AGATCTTCTATTGAATCGATCGGAACCAATTCTATCTTCTACGCGACAGC
ACTGAAGGCCTTAAAACGTGATTATGGCAACCCTTACGTCATCGCTCATC
TCAAGCTGAAAGAAATGTTTGACAGACCTCAAATCACCATAACCGACCAT
GAAGGATTGAGAAACTTCTACCAACAGTTGAAGACAGCAATGGCATGGTT
CGAATCCATTGGCAACAGTAGCTACAACAATCCAGAAACCGTCGCCAAAG
CAGTATCTATCATTCCAATACAACACAAGTTCCGATTCTTTAATAGATAT
GGTAACGATCAACCCAAATTGACTGACCTCTACGTATTTGTCAACTGGCT
CGAATGTATCGTCAAAGAGTTGTTCAATCCCATTGCCATGATCATCAGTG
ATGAAAAAACGTCGAAGTCACCGAAAGACAAAGAAAGTAGAAACCTAAAA
TTTCGAAACAATTTCATCGGTAGGCAATTCAAATGCTGGCTGTGCTCCAA
AGACCACAAAATATCAAAATGTCCAAAGATCCTCAATGCATCTACAGACG
ATCGACANCCACAAAATATCAAAATGTCCAAAGATCCTCAATGCATCTAC
AGACGATCGACAGAAAATCGTGAGAGAAAAAGGACTTTGTTTCAACTGTT
TCTCTAACAATCATCTCATTAAAGAGTGTCCTTCCAAATTTACATGTACC
AAGGACGAATGTGGTAAAAAACATCACACTTTGCTTCACAGAGATACAGC
CACTACCACTGATACTCCTGGATCAGCAAAAAGTATGCAATGTTCTACTA
CCAACCAGACCTTCCTTCAAATTGTCCCTGTCGTATTATCAAATGGTAAA
TACAGCATCAAAACCAATGCAGTCCTCGACTCTGGATCTGATAGTACCTT
GATTCGTGCTGATACCGCCGAGGCTCTACACCTATCCGGTAAGAAAGAAA
CTCTTCAAATGTCGAACGTATTATCAAAGGAGACAAGTCTGCAATCAAAA
AGAGTCTGCTTCAATCTTGAATCACACGACAACAAAACCAAAGAGAAACT
CGACAACGTTTGGGTAATTGAGAACCTTGACGTACCAGTAAATAGGTACG
ACATCAATAAAGTGAAAACAGAATTTCAACACCTGAAAGACATTACATTT
CCAACACCTCATGATTCAGACGTC Coding sequence (CDS) from alignment at sc0001570:48680..50603- >TCONS_00037099 ID=TCONS_00037099|Name=TCONS_00037099|organism=Clytia hemisphaerica|type=CDS|length=3738bp|location=Sequence derived from alignment at sc0001570:48680..50603- (Clytia hemisphaerica)
AGAAAATCGTGAGAGAAAAAGGACTTTGTTTCAACTGTTTCTCTAACAAT
CATCTCATTAAAGAGTGTCCTTCCAAATTTACATGTACCAAGGACGAATG
TGGTAAAAAACATCACACTTTGCTTCACAGAGATACAGCCACTACCACTG
ATACTCCTGGATCAGCAAAAAGTATGCAATGTTCTACTACCAACCAGACC
TTCCTTCAAATTGTCCCTGTCGTATTATCAAATGGTAAATACAGCATCAA
AACCAATGCAGTCCTCGACTCTGGATCTGATAGTACCTTGATTCGTGCTG
ATACCGCCGAGGCTCTACACCTATCCGGTAAGAAAGAAACTCTTCAAATG
TCGAACGTATTATCAAAGGAGACAAGTCTGCAATCAAAAAGAGTCTGCTT
CAATCTTGAATCACACGACAACAAAACCAAAGAGAAACTCGACAACGTTT
GGGTAATTGAGAACCTTGACGTACCAGTAAATAGGTACGACATCAATAAA
GTGAAAACAGAATTTCAACACCTGAAAGACATTACATTTCCAACACCTCA
TGATTCAGACGTCNNCCAAAGTTCAGTCAGTTCATCAGGAAAGACTTCGT
CAACAAAGTCAGACAAGCTGAGAGATGTTACCATGAAGAAGGCCAGTGAG
ATCGCCAAACTAAAACATCAGTTTTTAGAAGATAAATTTAAACTCGATCT
TCAAATAATCAAGTCGAACGCCAAACTCGAGAGAGACCAGATAGAGAACA
AAGAGGAGGATAGGAAGTCAGTCATTTCTCACCACTTTCCCATCAACCAC
AATCAATCAAAGGAGCTTCACACTCGTTATGCTTCATCTCGTGCATCTTC
AGTTTCATCCTTTCGCCACTTACTCTTACCAAAGAAACGCTCTCTTGAAA
CCAAGATTCATCACACAGCCACTGCCAAAAGTTGTCATCAGAAGCAACCA
GACAGTCAGCCATTGGAACAACCATCCATCAAAGCTACAAATAGTCAGCC
ATTGTCTCATCAACAACCATCGACACAGTTAAAGGCAAGTCACAGACAGG
TCGAGCCTTGTGATGCATTTATTGATGAATTGATTGAATATAAAGAGACT
GAGATTCCAGTAGACAATACGTTGGCATCTAGGGTGATCCAAGTAGAGTG
CGAGTCAAGACACCTGCCACCTATTGAGTTGAAACGATTTGATGGTAGTT
CGTTGCAATGGCCAGAATTCATACAGAATTTCAAGTCCAGGATTCATTTG
AAAAGTAGTTTTAATGACACTATTAGAATGGAAAGACTACTTAGTGTACT
GGACGGACCAGCAAGATCTTCTATTGAATCGATCGGAACCAATTCTATCT
TCTACGCGACAGCACTGAAGGCCTTAAAACGTGATTATGGCAACCCTTAC
GTCATCGCTCATCTCAAGCTGAAAGAAATGTTTGACAGACCTCAAATCAC
CATAACCGACCATGAAGGATTGAGAAACTTCTACCAACAGTTGAAGACAG
CAATGGCATGGTTCGAATCCATTGGCAACAGTAGCTACAACAATCCAGAA
ACCGTCGCCAAAGCAGTATCTATCATTCCAATACAACACAAGTTCCGATT
CTTTAATAGATATGGTAACGATCAACCCAAATTGACTGACCTCTACGTAT
TTGTCAACTGGCTCGAATGTATCGTCAAAGAGTTGTTCAATCCCATTGCC
ATGATCATCAGTGATGAAAAAACGTCGAAGTCACCGAAAGACAAAGAAAG
TAGAAACCTAAAATTTCGAAACAATTTCATCGGTAGGCAATTCAAATGCT
GGCTGTGCTCCAAAGACCACAAAATATCAAAATGTCCAAAGATCCTCAAT
GCATCTACAGACGATCGACAGAAAATCGTGAGAGAAAAAGGACTTTGTTT
CAACTGTTTCTCTAACAATCATCTCATTAAAGAGTGTCCTTCCAAATTTA
CATGTACCAAGGACGAATGTGGTAAAAAACATCACACTTTGCTTCACAGA
GATACAGCCACTACCACTGATACTCCTGGATCAGCAAAAAGTATGCAATG
TTCTACTACCAACCAGACCTTCCTTCAAATTGTCCCTGTCGTATTATCAA
ATGGTAAATACAGCATCAAAACCAATGCAGTCCTCGACTCTGGATCTGAT
AGTACCTTGATTCGTGCTGATACCGCCGAGGCTCTACACCTATCCGGTAA
GAAAGAAACTCTTCAAATGTCGAACGTATTATCAAAGGAGACAAGTCTGC
AATCAAAAAGAGTCTGCTTCAATCTTGAATCACACGACAACAAAACCAAA
GAGAAACTCGACAACGTTTGGGTAATTGAGAACCTTGACGTACCAGTAAA
TAGGTACGACATCAATAAAGTGAAAACAGAATTTCAACACCTGAAAGACA
TTACATTTCCAACACCTCATGATTCAGACGTCNNCCAAAGTTCAGTCAGT
TCATCAGGAAAGACTTCGTCAACAAAGTCAGACAAGCTGAGAGATGTTAC
CATGAAGAAGGCCAGTGAGATCGCCAAACTAAAACATCAGTTTTTAGAAG
ATAAATTTAAACTCGATCTTCAAATAATCAAGTCGAACGCCAAACTCGAG
AGAGACCAGATAGAGAACAAAGAGGAGGATAGGAAGTCAGTCATTTCTCA
CCACTTTCCCATCAACCACAATCAATCAAAGGAGCTTCACACTCGTTATG
CTTCATCTCGTGCATCTTCAGTTTCATCCTTTCGCCACTTACTCTTACCA
AAGAAACGCTCTCTTGAAACCAAGATTCATCACACAGCCACTGCCAAAAG
TTGTCATCAGAAGCAACCAGACAGTCAGCCATTGGAACAACCATCCATCA
AAGCTACAAATAGTCAGCCATTGTCTCATCAACAACCATCGACACAGTTA
AAGGCAAGTCACAGACAGGTCGAGCCTTGTGATGCATTTATTGATGAATT
GATTGAATATAAAGAGACTGAGATTCCAGTAGACAATACGTTGGCATCTA
GGGTGATCCAAGTAGAGTGCGAGTCAAGACACCTGCCACCTATTGAGTTG
AAACGATTTGATGGTAGTTCGTTGCAATGGCCAGAATTCATACAGAATTT
CAAGTCCAGGATTCATTTGAAAAGTAGTTTTAATGACACTATTAGAATGG
AAAGACTACTTAGTGTACTGGACGGACCAGCAAGATCTTCTATTGAATCG
ATCGGAACCAATTCTATCTTCTACGCGACAGCACTGAAGGCCTTAAAACG
TGATTATGGCAACCCTTACGTCATCGCTCATCTCAAGCTGAAAGAAATGT
TTGACAGACCTCAAATCACCATAACCGACCATGAAGGATTGAGAAACTTC
TACCAACAGTTGAAGACAGCAATGGCATGGTTCGAATCCATTGGCAACAG
TAGCTACAACAATCCAGAAACCGTCGCCAAAGCAGTATCTATCATTCCAA
TACAACACAAGTTCCGATTCTTTAATAGATATGGTAACGATCAACCCAAA
TTGACTGACCTCTACGTATTTGTCAACTGGCTCGAATGTATCGTCAAAGA
GTTGTTCAATCCCATTGCCATGATCATCAGTGATGAAAAAACGTCGAAGT
CACCGAAAGACAAAGAAAGTAGAAACCTAAAATTTCGAAACAATTTCATC
GGTAGGCAATTCAAATGCTGGCTGTGCTCCAAAGACCACAAAATATCAAA
ATGTCCAAAGATCCTCAATGCATCTACAGACGATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037099-exon-sc0001570-1575043694:49298..50603 | TCONS_00037099-exon-sc0001570-1575043694:49298..50603 | Clytia hemisphaerica | exon |
| TCONS_00037099-exon-sc0001570-1575043694:48680..49242 | TCONS_00037099-exon-sc0001570-1575043694:48680..49242 | Clytia hemisphaerica | exon |
| TCONS_00037099-exon-sc0001570-1510915933:49298..50603 | TCONS_00037099-exon-sc0001570-1510915933:49298..50603 | Clytia hemisphaerica | exon |
| TCONS_00037099-exon-sc0001570-1510915933:48680..49242 | TCONS_00037099-exon-sc0001570-1510915933:48680..49242 | Clytia hemisphaerica | exon |
| TCONS_00037099-exon-sc0001570-1491911889:49298..50603 | TCONS_00037099-exon-sc0001570-1491911889:49298..50603 | Clytia hemisphaerica | exon |
| TCONS_00037099-exon-sc0001570-1491911889:48680..49242 | TCONS_00037099-exon-sc0001570-1491911889:48680..49242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001570 | supercontig | sc0001570:48680..50603 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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