TCONS_00037092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037092
Unique NameTCONS_00037092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037092 ID=TCONS_00037092|Name=TCONS_00037092|organism=Clytia hemisphaerica|type=transcript|length=1094bp
CATATTTTCATTCTTTAACGGTTCATCTCGCTGAAGTCATTCGTATCATC
GCGCCCTCCTCCCTTTACACTGAGAGCGAAGAGGGTATTTTGCCATCATA
CGCGCCATAGTAAAGTCGACATCAAACAGGACAAAAGAATCAGTCAGGGA
TGTAGGTTTAATAAGATACCAAACAGAGAAAGAGTTTCAACAAAACTATG
GGACACGTGGTAACTCGAACAACAAAGAATCAAAAATTGCCCAGTTCCAA
ACACTTATCACAAGCCACCCAAATTCAAGATTCCATCTCGGAGAGTGTGA
TAAAAGTTGGCCGAAACATCTGAAGCGCATTGTGGACTATGTGCTGGCAA
GAAGCTGGTGGAAGCGAGAAGGAAACTATATCGTTTTTTTTGACGGGGAG
GATGAATTTGAGAACAGAATGGAGGGACCCGAGTTATTAGATTTCAAGAC
AACTAACCTTGAGAAGGTCCAACAAATCCTTACTAGCCAATGGAAAACCG
TTCCAGAAGATATTTTGGAAGAGTTGGTTTGCGAACCTGAAATGAATGAT
GACACAGATGACAATAATGATCATAATGAGAATGAGAAAAAAGATTCAGA
GGAAAATGACAAACTTCCAGAGACAATGGAAACCAACCACTCCGAGGATG
TCCAGGAAAAGCGTATGGAGTTGAATATGATGGAGGCGACAGAAGAAAAT
TTCGTCAATGAAAATATGGCATCGACCAGTAAAAGAGAAGAAAGACTCCC
TGATACCGACCTGTCATACCaattgaaaacgaaagttggTAAAAGTTTAT
ATCATGTCTTTGGTATGACtaatgaagtgaaaagttttgatTCCCATCAT
CTCAAATTCCGTGATTATAAGTACGAATCAGATCGTGCGAAGTGCAATAA
TTTGATCACAAAATTTACGTCAGAATTGAAGAATATTTACCGTGATTCTG
CAAAACAAGTTAAGGAATGGGAAGACGCTTACTTAAAGAAACATTTGACG
GACCCGCTTTTTAAATACATGGATTCTGATATGAAAAAGATTTACatgaa
aatgataaattctAAATCACTTATGAAACACTTCAACATCTCAT
Run BLAST on NCBI

transcript from alignment at sc0001569:9267..12744+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037092 ID=TCONS_00037092|Name=TCONS_00037092|organism=Clytia hemisphaerica|type=transcript|length=3478bp|location=Sequence derived from alignment at sc0001569:9267..12744+ (Clytia hemisphaerica)
CATATTTTCATTCTTTAACGGTTCATCTCGCTGAAGTCATTCGTATCATC
GCGCCCTCCTCCCTTTACACTGAGAGCGAAGAGGGTATTTTGCCATCATA
CGCGCCATAGTAAAGTCGACATCAAACAGGACAAAAGAATCAGTCAGGGA
TGTAGGTTTAATAAGGTGAGCGATTAAAACTGTAAAAAATTGATTCAAGC
TTTTTCATTCgtaattcaatgtttaaaaattgtactccaaacccatcccc
actggattttttaaccgtggaacaatagaatttctatccccatcgggatt
tcaataggaattttcatacccactgaggaaaaaagttccagtggggctgt
gagacaggggtgttctaaagttcataacgtccatataacgttagataaac
gttgaaacaacgttttgtgccagcgTGGTAAGTTTTAGCCATATTTCCAG
GTGGGAAAAGTCTGTAGAGAGTTGTATCTTGGCGCTctttaaaactctac
ttttaaaaaactttccAGATACCAAACAGAGAAAGAGTTTCAACAAAACT
ATGGGACACATGGTAACTCGAACAACAAAGAATCAAAAATTGCCCAGTTC
CAAACACTTATCAGTAAGTAAATGTTTTAAACAATCGACGAAGNcgtgga
acaatagaatttctatccccatcgggatttcaataggaattttcataccc
actgaggaaaaaagttccagtggggctgtgagacaggggtgttctaaagt
tcataacgtccatataacgttagataaacgttgaaacaacgttttgtgcc
agcgTGGTAAGTTTTAGCCATATTTCCAGGTGGGAAAAGTCTGTAGAGAG
TTGTATCTTGGCCTctttaaaactctacttttaaaaaactttccAGATAC
CAAACAGAGAAAGAGTTTCAACAAAACTATGGGACACGTGGTAACTCGAA
CAACAAAGAATCAAAAATTGCCCAGTTCCAAACACTTATCAGTAAGTAAA
TGTTTTAAACAatcgatgaaaaaaaataaaatagtttgatatcatttcct
tattttttttatgGTGAAAAAAGGTTCGTCAAGAATGGCcacagaaaaac
tttttttcggagTAACTTAAAATCTTTAGTATTTCTTTCCTCCCTAAATT
TGCCTGGTTTGACCCTTTTTCCGAAGAGTGTTATGTAAAATTTAGTGGGT
GGTACCTTgcttttccttttgaaaaatagGACTGTATTGGAAACTTCCAG
GTAGTTTAGGGGTAGTGTAACtgcacacacccctgtctctatcTTAGGGA
TAAAATCATGGCGCTAAAtacaaatggggatgaaaatatCTTGCTTTTAA
TGGGTGGGGATTTTAAATTATATTGTGTACAGCTTAAAAATTCCAGTAGG
ATAGCCAAAATGTCAGTGTTTTTTTCCAATGGGGATGATAAGTTTtctaa
tggggatgaaatttcatGGTATTTGATCAACGGGGACGATTATTTTGCCG
ATTTCTCTAGTGGGTAGATCCTACCGGGTctttgatacaggggtgtttat
aTGAAGTCAGATTTTATATTTGTACAGGATACAAAAGGGTGATGGTCCTT
ACTCAATCTCCATAAATACGAAAGTAAAGTAAAGATTTTCTATGCATCCC
CACTGCCTGATTTACTaaagaaaatcatttcatttCCAGCAAGCCACCCA
AATTCAAGATTCCATCTCGGAGAGTGTGATAAAAGTTGGCCGAAACATCT
GAAGCGCATTGTGGACTATGTGCTGGCAAGAAGCTGGTGGAAGCGAGAAG
GAAACTATATCGTTTTTTTTGACGGGGAGGATGAATTTGAGAACAGAATG
GAGGGACCCGAGTTATTAGATTTCAAGACAACTAACCTTGAGAAGGTAAA
CCCTTTTAAAAATCAACttgaagaaaattaaaaaacaaaaaatgttttat
tgacATCAATTCTATAGGATTTTTGTTTTGCGTGTATCTCATTACAATAA
GATACCTCTCACCACACTAAAaccccttttttgttttttagccaattact
caatttttaagCAGACCCGAAACATTGATTAATTTGAATACAATATGAGT
AGTAAGCTTGTTTTTCAAAGGATGTAGAATTTGGCTTTTTTGGAAGGATA
TTGAAAAATCAAACAGAATTTTTACCCCATTTTTTTCTAAGGTCCAACAA
ATCCTTACTAGCCAATGGAAAACCGTTCCAGAAGATATTTTGGAAGAGTT
GGTTTGCGAACCTGAAATGAATGATGACACAGATGACAATAATGATCATA
ATGAGAATGAGAAAAAAGGTGATTGTCCAAATATTGCTTTCAATAATTTT
CATATATGCTATCAAAGtaatctaaaattttaaatcagACCTTTCCAAAT
CAGATAACCATTCAtctaagaagaaaaattacacagtatagaccttttca
taaattacgccaCGAACAtaacttgcctcgttttgactaattaaCTAATT
TTAAGCGGAGTTCATTAAAACTACTCTCTATTCATGAAGAAagcatttaa
tgtctcaagggacaaaATCACTATGGTcattgtttgaaaacgaggcaagt
gatgttggtgacgtaatttatgaaaaggtctattatgttAAGTTATGAAA
ATCTCTTTTAGATTCAGAGGAAAATGACAAACTTCCAGAGACAATGGAAA
CCAACCACTCCGAGGATGTCCAGGAAAAGCGTATGGGTAGGAAAAATTTA
AAAGCAATGCAATGCccatcatttttttgtttttaagggctctgaccata
acaaaatgtacaaaatttcTAGGGTGAGGGAGACTATGTGTATCCCTCAA
TCTTATATTATTTGGAAAATCTTACTGCCCCATAAACCCGTGAGTAATAT
CGTGCTttgaagtaaaatatttttcaattattaCTTTATAGAGTTGAATA
TGATGGAGGCGACAGAAGAAAATTTCGTCAATGAAAATATGGCATCGACC
AGTAAAAGAGGTTGGTCTTAGCTTTGGCTTTTCTAAACAAATTATTTATT
TCATGAGCTATTAACATTAGTTTCCCCACCGAACACAAATAGttaaatca
tttatttttaacTCATTTCAGAAGAAAGACTCCCTGATACCGACCTGTCA
TACCaattgaaaacgaaagttggTAAAAGTTTATATCATGTCTTTGGTAT
GACtaatgaagtgaaaagttttgatTCCCATCATCTCAAATTCCGTGATT
ATAAGTACGAATCAGATCGTGCGAAGTGCAATAATTTGATCACAAAATTT
ACGTCAGAATTGAAGAATATTTACCGTGATTCTGCAAAACAAGTTAAGGA
ATGGGAAGACGCTTACTTAAAGAAACATTTGACGGACCCGCTTTTTAAAT
ACATGGATTCTGATATGAAAAAGATTTACatgaaaatgataaattctAAA
TCACTTATGAAACACTTCAACATCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021932XLOC_021932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037092-exon-sc0001569-1491911889:9267..9431TCONS_00037092-exon-sc0001569-1491911889:9267..9431Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1510915933:9267..9431TCONS_00037092-exon-sc0001569-1510915933:9267..9431Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1575043694:9267..9431TCONS_00037092-exon-sc0001569-1575043694:9267..9431Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1491911889:10163..10257TCONS_00037092-exon-sc0001569-1491911889:10163..10257Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1510915933:10163..10257TCONS_00037092-exon-sc0001569-1510915933:10163..10257Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1575043694:10163..10257TCONS_00037092-exon-sc0001569-1575043694:10163..10257Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1491911889:10956..11161TCONS_00037092-exon-sc0001569-1491911889:10956..11161Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1510915933:10956..11161TCONS_00037092-exon-sc0001569-1510915933:10956..11161Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1575043694:10956..11161TCONS_00037092-exon-sc0001569-1575043694:10956..11161Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1491911889:11458..11584TCONS_00037092-exon-sc0001569-1491911889:11458..11584Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1510915933:11458..11584TCONS_00037092-exon-sc0001569-1510915933:11458..11584Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1575043694:11458..11584TCONS_00037092-exon-sc0001569-1575043694:11458..11584Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1491911889:11928..12002TCONS_00037092-exon-sc0001569-1491911889:11928..12002Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1510915933:11928..12002TCONS_00037092-exon-sc0001569-1510915933:11928..12002Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1575043694:11928..12002TCONS_00037092-exon-sc0001569-1575043694:11928..12002Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1491911889:12208..12276TCONS_00037092-exon-sc0001569-1491911889:12208..12276Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1510915933:12208..12276TCONS_00037092-exon-sc0001569-1510915933:12208..12276Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1575043694:12208..12276TCONS_00037092-exon-sc0001569-1575043694:12208..12276Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1491911889:12388..12744TCONS_00037092-exon-sc0001569-1491911889:12388..12744Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1510915933:12388..12744TCONS_00037092-exon-sc0001569-1510915933:12388..12744Clytia hemisphaericaexon
TCONS_00037092-exon-sc0001569-1575043694:12388..12744TCONS_00037092-exon-sc0001569-1575043694:12388..12744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001569supercontigsc0001569:9267..12744 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.019546	0	0	0.108121	0.128158	0.0773089	0.0482504	0.118234	0.376592	0	0.106793	1.59967	1.10752	0.0113816	0.0244284	0.0150469	0.0308452	0	0	0.0387592	0	0.022982	0.0208939	0.150642	3.76444	0.0274842	0	0.0222472	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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