TCONS_00037091 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00037091
Unique Name	TCONS_00037091
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1094

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001569:9267..12744+
coding sequence from alignment at sc0001569:9267..12744+

transcript sequence

>TCONS_00037091 ID=TCONS_00037091|Name=TCONS_00037091|organism=Clytia hemisphaerica|type=transcript|length=1094bp
CATATTTTCATTCTTTAACGGTTCATCTCGCTGAAGTCATTCGTATCATC
GCGCCCTCCTCCCTTTACACTGAGAGCGAAGAGGGTATTTTGCCATCATA
CGCGCCATAGTAAAGTCGACATCAAACAGGACAAAAGAATCAGTCAGGGA
TGTAGGTTTAATAAGATACCAAACAGAGAAAGAGTTTCAACAAAACTATG
GGACACATGGTAACTCGAACAACAAAGAATCAAAAATTGCCCAGTTCCAA
ACACTTATCACAAGCCACCCAAATTCAAGATTCCATCTCGGAGAGTGTGA
TAAAAGTTGGCCGAAACATCTGAAGCGCATTGTGGACTATGTGCTGGCAA
GAAGCTGGTGGAAGCGAGAAGGAAACTATATCGTTTTTTTTGACGGGGAG
GATGAATTTGAGAACAGAATGGAGGGACCCGAGTTATTAGATTTCAAGAC
AACTAACCTTGAGAAGGTCCAACAAATCCTTACTAGCCAATGGAAAACCG
TTCCAGAAGATATTTTGGAAGAGTTGGTTTGCGAACCTGAAATGAATGAT
GACACAGATGACAATAATGATCATAATGAGAATGAGAAAAAAGATTCAGA
GGAAAATGACAAACTTCCAGAGACAATGGAAACCAACCACTCCGAGGATG
TCCAGGAAAAGCGTATGGAGTTGAATATGATGGAGGCGACAGAAGAAAAT
TTCGTCAATGAAAATATGGCATCGACCAGTAAAAGAGAAGAAAGACTCCC
TGATACCGACCTGTCATACCaattgaaaacgaaagttggTAAAAGTTTAT
ATCATGTCTTTGGTATGACtaatgaagtgaaaagttttgatTCCCATCAT
CTCAAATTCCGTGATTATAAGTACGAATCAGATCGTGCGAAGTGCAATAA
TTTGATCACAAAATTTACGTCAGAATTGAAGAATATTTACCGTGATTCTG
CAAAACAAGTTAAGGAATGGGAAGACGCTTACTTAAAGAAACATTTGACG
GACCCGCTTTTTAAATACATGGATTCTGATATGAAAAAGATTTACatgaa
aatgataaattctAAATCACTTATGAAACACTTCAACATCTCAT

Run BLAST on NCBI

protein sequence of TCONS_00037091-protein

>TCONS_00037091-protein ID=TCONS_00037091-protein|Name=TCONS_00037091-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MEGPELLDFKTTNLEKVQQILTSQWKTVPEDILEELVCEPEMNDDTDDNN
DHNENEKKDSEENDKLPETMETNHSEDVQEKRMELNMMEATEENFVNENM
ASTSKREERLPDTDLSYQLKTKVGKSLYHVFGMTNEVKSFDSHHLKFRDY
KYESDRAKCNNLITKFTSELKNIYRDSAKQVKEWEDAYLKKHLTDPLFKY
MDSDMKKIYMKMINSKSLMKHFNIS

Run BLAST on NCBI

transcript from alignment at sc0001569:9267..12744+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00037091 ID=TCONS_00037091|Name=TCONS_00037091|organism=Clytia hemisphaerica|type=transcript|length=3478bp|location=Sequence derived from alignment at sc0001569:9267..12744+ (Clytia hemisphaerica)
CATATTTTCATTCTTTAACGGTTCATCTCGCTGAAGTCATTCGTATCATC
GCGCCCTCCTCCCTTTACACTGAGAGCGAAGAGGGTATTTTGCCATCATA
CGCGCCATAGTAAAGTCGACATCAAACAGGACAAAAGAATCAGTCAGGGA
TGTAGGTTTAATAAGGTGAGCGATTAAAACTGTAAAAAATTGATTCAAGC
TTTTTCATTCgtaattcaatgtttaaaaattgtactccaaacccatcccc
actggattttttaaccgtggaacaatagaatttctatccccatcgggatt
tcaataggaattttcatacccactgaggaaaaaagttccagtggggctgt
gagacaggggtgttctaaagttcataacgtccatataacgttagataaac
gttgaaacaacgttttgtgccagcgTGGTAAGTTTTAGCCATATTTCCAG
GTGGGAAAAGTCTGTAGAGAGTTGTATCTTGGCGCTctttaaaactctac
ttttaaaaaactttccAGATACCAAACAGAGAAAGAGTTTCAACAAAACT
ATGGGACACATGGTAACTCGAACAACAAAGAATCAAAAATTGCCCAGTTC
CAAACACTTATCAGTAAGTAAATGTTTTAAACAATCGACGAAGNcgtgga
acaatagaatttctatccccatcgggatttcaataggaattttcataccc
actgaggaaaaaagttccagtggggctgtgagacaggggtgttctaaagt
tcataacgtccatataacgttagataaacgttgaaacaacgttttgtgcc
agcgTGGTAAGTTTTAGCCATATTTCCAGGTGGGAAAAGTCTGTAGAGAG
TTGTATCTTGGCCTctttaaaactctacttttaaaaaactttccAGATAC
CAAACAGAGAAAGAGTTTCAACAAAACTATGGGACACGTGGTAACTCGAA
CAACAAAGAATCAAAAATTGCCCAGTTCCAAACACTTATCAGTAAGTAAA
TGTTTTAAACAatcgatgaaaaaaaataaaatagtttgatatcatttcct
tattttttttatgGTGAAAAAAGGTTCGTCAAGAATGGCcacagaaaaac
tttttttcggagTAACTTAAAATCTTTAGTATTTCTTTCCTCCCTAAATT
TGCCTGGTTTGACCCTTTTTCCGAAGAGTGTTATGTAAAATTTAGTGGGT
GGTACCTTgcttttccttttgaaaaatagGACTGTATTGGAAACTTCCAG
GTAGTTTAGGGGTAGTGTAACtgcacacacccctgtctctatcTTAGGGA
TAAAATCATGGCGCTAAAtacaaatggggatgaaaatatCTTGCTTTTAA
TGGGTGGGGATTTTAAATTATATTGTGTACAGCTTAAAAATTCCAGTAGG
ATAGCCAAAATGTCAGTGTTTTTTTCCAATGGGGATGATAAGTTTtctaa
tggggatgaaatttcatGGTATTTGATCAACGGGGACGATTATTTTGCCG
ATTTCTCTAGTGGGTAGATCCTACCGGGTctttgatacaggggtgtttat
aTGAAGTCAGATTTTATATTTGTACAGGATACAAAAGGGTGATGGTCCTT
ACTCAATCTCCATAAATACGAAAGTAAAGTAAAGATTTTCTATGCATCCC
CACTGCCTGATTTACTaaagaaaatcatttcatttCCAGCAAGCCACCCA
AATTCAAGATTCCATCTCGGAGAGTGTGATAAAAGTTGGCCGAAACATCT
GAAGCGCATTGTGGACTATGTGCTGGCAAGAAGCTGGTGGAAGCGAGAAG
GAAACTATATCGTTTTTTTTGACGGGGAGGATGAATTTGAGAACAGAATG
GAGGGACCCGAGTTATTAGATTTCAAGACAACTAACCTTGAGAAGGTAAA
CCCTTTTAAAAATCAACttgaagaaaattaaaaaacaaaaaatgttttat
tgacATCAATTCTATAGGATTTTTGTTTTGCGTGTATCTCATTACAATAA
GATACCTCTCACCACACTAAAaccccttttttgttttttagccaattact
caatttttaagCAGACCCGAAACATTGATTAATTTGAATACAATATGAGT
AGTAAGCTTGTTTTTCAAAGGATGTAGAATTTGGCTTTTTTGGAAGGATA
TTGAAAAATCAAACAGAATTTTTACCCCATTTTTTTCTAAGGTCCAACAA
ATCCTTACTAGCCAATGGAAAACCGTTCCAGAAGATATTTTGGAAGAGTT
GGTTTGCGAACCTGAAATGAATGATGACACAGATGACAATAATGATCATA
ATGAGAATGAGAAAAAAGGTGATTGTCCAAATATTGCTTTCAATAATTTT
CATATATGCTATCAAAGtaatctaaaattttaaatcagACCTTTCCAAAT
CAGATAACCATTCAtctaagaagaaaaattacacagtatagaccttttca
taaattacgccaCGAACAtaacttgcctcgttttgactaattaaCTAATT
TTAAGCGGAGTTCATTAAAACTACTCTCTATTCATGAAGAAagcatttaa
tgtctcaagggacaaaATCACTATGGTcattgtttgaaaacgaggcaagt
gatgttggtgacgtaatttatgaaaaggtctattatgttAAGTTATGAAA
ATCTCTTTTAGATTCAGAGGAAAATGACAAACTTCCAGAGACAATGGAAA
CCAACCACTCCGAGGATGTCCAGGAAAAGCGTATGGGTAGGAAAAATTTA
AAAGCAATGCAATGCccatcatttttttgtttttaagggctctgaccata
acaaaatgtacaaaatttcTAGGGTGAGGGAGACTATGTGTATCCCTCAA
TCTTATATTATTTGGAAAATCTTACTGCCCCATAAACCCGTGAGTAATAT
CGTGCTttgaagtaaaatatttttcaattattaCTTTATAGAGTTGAATA
TGATGGAGGCGACAGAAGAAAATTTCGTCAATGAAAATATGGCATCGACC
AGTAAAAGAGGTTGGTCTTAGCTTTGGCTTTTCTAAACAAATTATTTATT
TCATGAGCTATTAACATTAGTTTCCCCACCGAACACAAATAGttaaatca
tttatttttaacTCATTTCAGAAGAAAGACTCCCTGATACCGACCTGTCA
TACCaattgaaaacgaaagttggTAAAAGTTTATATCATGTCTTTGGTAT
GACtaatgaagtgaaaagttttgatTCCCATCATCTCAAATTCCGTGATT
ATAAGTACGAATCAGATCGTGCGAAGTGCAATAATTTGATCACAAAATTT
ACGTCAGAATTGAAGAATATTTACCGTGATTCTGCAAAACAAGTTAAGGA
ATGGGAAGACGCTTACTTAAAGAAACATTTGACGGACCCGCTTTTTAAAT
ACATGGATTCTGATATGAAAAAGATTTACatgaaaatgataaattctAAA
TCACTTATGAAACACTTCAACATCTCAT

Coding sequence (CDS) from alignment at sc0001569:9267..12744+

>TCONS_00037091 ID=TCONS_00037091|Name=TCONS_00037091|organism=Clytia hemisphaerica|type=CDS|length=3375bp|location=Sequence derived from alignment at sc0001569:9267..12744+ (Clytia hemisphaerica)
ATGGAGGGACCCGAGTTATTAGATTTCAAGACAACTAACCTTGAGAAGGT
CCAACAAATCCTTACTAGCCAATGGAAAACCGTTCCAGAAGATATTTTGG
AAGAGTTGGTTTGCGAACCTGAAATGAATGATGACACAGATGACAATAAT
GATCATAATGAGAATGAGAAAAAAGATTCAGAGGAAAATGACAAACTTCC
AGAGACAATGGAAACCAACCACTCCGAGGATGTCCAGGAAAAGCGTATGG
AGTTGAATATGATGGAGGCGACAGAAGAAAATTTCGTCAATGAAAATATG
GCATCGACCAGTAAAAGAGAAGAAAGACTCCCTGATACCGACCTGTCATA
CCaattgaaaacgaaagttggTAAAAGTTTATATCATGTCTTTGGTATGA
CtaatgaagtgaaaagttttgatTCCCATCATCTCAAATTCCGTGATTAT
AAGTACGAATCAGATCGTGCGAAGTGCAATAATTTGATCACAAAATTTAC
GTCAGAATTGAAGAATATTTACCGTGATTCTGCAAAACAAGTTAAGGAAT
GGGAAGACGCTTACTTAAAGAAACATTTGACGGACCCGCTTTTTAAATAC
ATGGATTCTGATATGAAAAAGATTTACatgaaaatgataaattctAAATC
ACTTATGAAACACTTCAACATCTCAATGGAGGGACCCGAGTTATTAGATT
TCAAGACAACTAACCTTGAGAAGGTCCAACAAATCCTTACTAGCCAATGG
AAAACCGTTCCAGAAGATATTTTGGAAGAGTTGGTTTGCGAACCTGAAAT
GAATGATGACACAGATGACAATAATGATCATAATGAGAATGAGAAAAAAG
ATTCAGAGGAAAATGACAAACTTCCAGAGACAATGGAAACCAACCACTCC
GAGGATGTCCAGGAAAAGCGTATGGAGTTGAATATGATGGAGGCGACAGA
AGAAAATTTCGTCAATGAAAATATGGCATCGACCAGTAAAAGAGAAGAAA
GACTCCCTGATACCGACCTGTCATACCaattgaaaacgaaagttggTAAA
AGTTTATATCATGTCTTTGGTATGACtaatgaagtgaaaagttttgatTC
CCATCATCTCAAATTCCGTGATTATAAGTACGAATCAGATCGTGCGAAGT
GCAATAATTTGATCACAAAATTTACGTCAGAATTGAAGAATATTTACCGT
GATTCTGCAAAACAAGTTAAGGAATGGGAAGACGCTTACTTAAAGAAACA
TTTGACGGACCCGCTTTTTAAATACATGGATTCTGATATGAAAAAGATTT
ACatgaaaatgataaattctAAATCACTTATGAAACACTTCAACATCTCA
ATGGAGGGACCCGAGTTATTAGATTTCAAGACAACTAACCTTGAGAAGGT
CCAACAAATCCTTACTAGCCAATGGAAAACCGTTCCAGAAGATATTTTGG
AAGAGTTGGTTTGCGAACCTGAAATGAATGATGACACAGATGACAATAAT
GATCATAATGAGAATGAGAAAAAAGATTCAGAGGAAAATGACAAACTTCC
AGAGACAATGGAAACCAACCACTCCGAGGATGTCCAGGAAAAGCGTATGG
AGTTGAATATGATGGAGGCGACAGAAGAAAATTTCGTCAATGAAAATATG
GCATCGACCAGTAAAAGAGAAGAAAGACTCCCTGATACCGACCTGTCATA
CCaattgaaaacgaaagttggTAAAAGTTTATATCATGTCTTTGGTATGA
CtaatgaagtgaaaagttttgatTCCCATCATCTCAAATTCCGTGATTAT
AAGTACGAATCAGATCGTGCGAAGTGCAATAATTTGATCACAAAATTTAC
GTCAGAATTGAAGAATATTTACCGTGATTCTGCAAAACAAGTTAAGGAAT
GGGAAGACGCTTACTTAAAGAAACATTTGACGGACCCGCTTTTTAAATAC
ATGGATTCTGATATGAAAAAGATTTACatgaaaatgataaattctAAATC
ACTTATGAAACACTTCAACATCTCAATGGAGGGACCCGAGTTATTAGATT
TCAAGACAACTAACCTTGAGAAGGTCCAACAAATCCTTACTAGCCAATGG
AAAACCGTTCCAGAAGATATTTTGGAAGAGTTGGTTTGCGAACCTGAAAT
GAATGATGACACAGATGACAATAATGATCATAATGAGAATGAGAAAAAAG
ATTCAGAGGAAAATGACAAACTTCCAGAGACAATGGAAACCAACCACTCC
GAGGATGTCCAGGAAAAGCGTATGGAGTTGAATATGATGGAGGCGACAGA
AGAAAATTTCGTCAATGAAAATATGGCATCGACCAGTAAAAGAGAAGAAA
GACTCCCTGATACCGACCTGTCATACCaattgaaaacgaaagttggTAAA
AGTTTATATCATGTCTTTGGTATGACtaatgaagtgaaaagttttgatTC
CCATCATCTCAAATTCCGTGATTATAAGTACGAATCAGATCGTGCGAAGT
GCAATAATTTGATCACAAAATTTACGTCAGAATTGAAGAATATTTACCGT
GATTCTGCAAAACAAGTTAAGGAATGGGAAGACGCTTACTTAAAGAAACA
TTTGACGGACCCGCTTTTTAAATACATGGATTCTGATATGAAAAAGATTT
ACatgaaaatgataaattctAAATCACTTATGAAACACTTCAACATCTCA
ATGGAGGGACCCGAGTTATTAGATTTCAAGACAACTAACCTTGAGAAGGT
CCAACAAATCCTTACTAGCCAATGGAAAACCGTTCCAGAAGATATTTTGG
AAGAGTTGGTTTGCGAACCTGAAATGAATGATGACACAGATGACAATAAT
GATCATAATGAGAATGAGAAAAAAGATTCAGAGGAAAATGACAAACTTCC
AGAGACAATGGAAACCAACCACTCCGAGGATGTCCAGGAAAAGCGTATGG
AGTTGAATATGATGGAGGCGACAGAAGAAAATTTCGTCAATGAAAATATG
GCATCGACCAGTAAAAGAGAAGAAAGACTCCCTGATACCGACCTGTCATA
CCaattgaaaacgaaagttggTAAAAGTTTATATCATGTCTTTGGTATGA
CtaatgaagtgaaaagttttgatTCCCATCATCTCAAATTCCGTGATTAT
AAGTACGAATCAGATCGTGCGAAGTGCAATAATTTGATCACAAAATTTAC
GTCAGAATTGAAGAATATTTACCGTGATTCTGCAAAACAAGTTAAGGAAT
GGGAAGACGCTTACTTAAAGAAACATTTGACGGACCCGCTTTTTAAATAC
ATGGATTCTGATATGAAAAAGATTTACatgaaaatgataaattctAAATC
ACTTATGAAACACTTCAACATCTCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021932	XLOC_021932	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00037091-protein	TCONS_00037091-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001569	supercontig	sc0001569:9267..12744 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.019546	0	0	0.108121	0.128158	0.0773089	0.0482504	0.118234	0	0.162457	0.106793	0	0	0.0113816	0.0244284	0.0150469	0.0308452	0	0	0.0387592	0	0.022982	0.0208939	0.150642	0	0.0274842	0	0.0222472	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00037091 vs. Swiss-Prot (Human)

BLAST of TCONS_00037091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00037091 (transcript) - C. hemisphaerica