|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037089 ID=TCONS_00037089|Name=TCONS_00037089|organism=Clytia hemisphaerica|type=transcript|length=530bp
AAGTTACTGAATCAGGTCTCCAACACCGGCTAACTGACAGTGAAAGGAAG
AAGAATGTGAGGATCATTGAAAATAGAGTGAAAACAAATATAGAAAAGGT
GATGCATGCACGCTCTGTTGATATTCTCTTTGGTACTCGACAAAGTAAAG
CACAATACGTTGATCAAAGGTCTGCGTTATATATGGAGTCAAAGAAAGAT
GCAGTTGCTCGCACAGAAAAGcGTAAACTTGATGAGGAATCTGGCAAATT
TAGAAAAAGACGCCACTGCACTAATTTCGAAGAGGTAGAGTTTGACAAGG
CTGCTATGCTAGAAGAAGTTAGGGGTATGAAAGGTCAAAAGGAGGTCAAT
CGGTACCAATGCCCAAATGTTACTCACATATCAGAAAGCAACTTTTAGAG
AAGATTGAGAAAGGTGAAATTCTTCTTGGCGAGCTGATTGAGCCTAAAAC
ATACATTCGGGTCAAATTGGAAGAAGGAAAACTGGTGAAGGAAACATTTC
AAGTGCATGGACGAAAGCTGCCACTGGATG Run BLAST on NCBI protein sequence of TCONS_00037089-protein >TCONS_00037089-protein ID=TCONS_00037089-protein|Name=TCONS_00037089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
VTESGLQHRLTDSERKKNVRIIENRVKTNIEKVMHARSVDILFGTRQSKA
QYVDQRSALYMESKKDAVARTEKRKLDEESGKFRKRRHCTNFEEVEFDKA
AMLEEVRGMKGQKEVNRYQCPNVTHISESNF Run BLAST on NCBI transcript from alignment at sc0001569:4352..7398+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037089 ID=TCONS_00037089|Name=TCONS_00037089|organism=Clytia hemisphaerica|type=transcript|length=3047bp|location=Sequence derived from alignment at sc0001569:4352..7398+ (Clytia hemisphaerica)
AAGTTACTGAATCAGGTCTCCAACACCGGCTAACTGACAGTGAAAGGAAG
AAGAATGTGAGGATCATTGAAAATAGAGTGAAAACAAATATAGAAAAGGT
GAGTAGTCAAGAGAGATTTCAATAAGTATTATGTTTACTAGTCTaaagat
ccatactctctaacCAAAACTTTCACCACTCAAACAAATGTCCCATCAAA
GCTACTCagtgagagtatggtatttatgtcccagtttgaatttgtaaaca
ttggtttgaatttcgtgccaaaaacAGCTGTTGATTGTACCTACTTATTC
ACTATATCTTTgcccctccactttcaaaatcAAGGCATGGGCTCTGTTTT
ATAGGGGAGAGTTACTCATATTATATTCTTTGGAAAACCTCCAGAAtcat
caaagttttaaaatttaaaattgttttgCCTGCAGCGCCGCTTTTCTGTT
TATTTCCTATGAACTTaagtcaaaatatataaaattgcAAGGTACTTGCT
GATAACTGTTACTGATTTTCAATATAGCTTTCCATCTAAATCCTCTCAAA
TTCAATATAAATTAGTACTTGGGCTTGTACCATGGAATTCCCACAAGTAA
GCCCATGCTCAGAATAATTAATCTGATTTTTATAGCTTTCCATTTCTGAA
ACctctgaaatttgatttaaaagtaCAAAATGGGCTTGTATCATGGAATT
CCCACAACTAAGCCCATGCTCTAAAGAATTGACCCCATTTTTAATAGCTT
TCCACCTGAAACCTCTGAAATTTGATATAAAAGTACAAAATGGGCTTTAC
ATGATGCAAGCTGATTGTGATTGTTGACCAGTAAATGTGCAGCCTTATGT
AACTAACGCAAATCCCGACATGAAAGTAGCTGCCTACTAGAGTTTTAAAA
GGTGCTCATCCTTGGATAAGCATGATCTCTAACAAACTAGGCTACGACTC
TCGCAGCGTGGATTTGCTTGTTACggcatttcaaaatttttgctcagatt
attttaaaactttttttatttaaaatatttttcacatatTAGCAATAAAA
ATTCTTTAGACATCCTGAGATGAAAAAGGTTTTTGTCAAACTTTTGAAAG
GGGGTAGAACCCAGAGGGGGAGCTGATATAGATATCTTTGAAAACATCTC
AGAACTCAACAGTTATTTCTAATTATGTACTCGGTAGTATGCGATAATCA
AACTTTACGTATAGAACGTATATAAGGTTGAGCATTTTTTGAATTGATAG
GTGATGCATGCACGCTCTGTTGATATTCTCTTTGGTACTCGACAAAGTAA
AGCACAATACGTTGATCAAAGGTCTGCGTTATATATGGAGTCAAAGAAAG
ATGCAGTTGCTCGCACAGAAAAGcgtaattatcattttttgagtaatttg
tcacagagaaaaaaaattagccaGGGGGTGAACGAGTTTATGTAGAAGAA
AACTATCTTTATTATCTGACGCCTTTAATAGCAACATTTGACTTCTTTAC
GTGTGTATAAGGAGAAATATGAACAACTAATCTTTGATAAGATTTggaca
aaagatttttctgcgatttttttcaaagtataGTTAGCTAATACCATTAT
TCATAATTACAGTCTTGAAAATTGGATTCAAATCATTGATTCTTCTTTTA
TATACCAAATAAGAAAGGCTCCGTTATGTGTGTGACTCAGACGAATTGAA
AAATCCCAATCAATACTGGATAAGATAGTTCAACTAGGAATTAGGGATAT
TTATAGTTCCCCAAATAGTACAGCTCTTTGCAAGAATGACTGAGGATAAT
aagggcaaaaaaaaattgttcccTAGAATTCCTAAAATTTACTGCGTTAC
TAATGTCATTATTTTCTAACAGGTAAACTTGATGAGGAATCTGGCAAATT
TAGAAAAAGACGCCACTGCACTAATTTCGAAGAGGTAGAGTTTGACAAGG
CTGCTATGCTAGAAGAAGTTAGGGGTATGAAAGGTCAAAAGGTTAGTATA
AGGAACTTTTTTATTATGATTAGCAAATCTTTGTTGAAATTATTCCGACC
TTTGAAAGCACCAACAATATAATGTAAAAAATCTAAagtcattttaaaat
ttattacacGTGCACGATCTCCCAGATTGGTGAATTCCCTGCTATTTATC
GATTTTTTACAAAGGCTAATCAATCATCCTGTTGTTTTTTAGTTGATTTT
GCAACATTTGGCAGACAAGTATAAAATTTCCAAGAAAGATGGTGCTGGTC
AGGTTGTTAGAGAGTTTTTAGACAGCGAGAATGTTGATTTCAGAGAGTAT
GACAACAATTACATCAACACAACTAGAGCATCTAGACGGGCTTATCAGAA
AATGTCAGGTATGCTGATGAGAGAAAAGGTTACATCATTCAATAGAACTG
GCTTTGGCCTTTTTAAAATTAGTCCAAATTATGTAAAATGCTGAAGGGCT
AATCTTTGCATTTACAACCACAAAaccaaaaatctcaattttcataaaaa
tggacttagaCCCCTTTGAATCAGGGTAGGCCCCTTTGAATCAGggtagg
ccccttttgaattaggGGGGGGGAGTACTTGGACTTgggcatttttttta
tttaagataGTGAATTTTACTTTGAATAGATTAAAAGAATATAAAGTAGA
AATCTTTTAGGCGATAATTGAATAGATTAAGTCCATGATAGTGTTGAATG
TTATTAAAAAGAATATTGCGAGTtcagctacacgtttttttataagaata
cagtAGTGTAATTTGACTAAGGGTCAAGTGTTCTtaagaaattgtcaaaa
ttgagggtgaaatattcttataaacaaGGCGTGTTACGACTTTGTGTTTT
CTTATCAGGAGGTCAATCGGTACCAATGCCCAAATGTTACTCACATATCA
GAAAGCAACTTTTAGAGAAGATTGAGAAAGGTGAAATTCTTCTTGGCGAG
CTGATTGAGCCTAAAACATACATTCGGGTCAAATTGGAAGAAGGAAAACT
GGTGAAGGAAACATTTCAAGTGCATGGACGAAAGCTGCCACTGGATG Coding sequence (CDS) from alignment at sc0001569:4352..7398+ >TCONS_00037089 ID=TCONS_00037089|Name=TCONS_00037089|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0001569:4352..7398+ (Clytia hemisphaerica)
GTTACTGAATCAGGTCTCCAACACCGGCTAACTGACAGTGAAAGGAAGAA
GAATGTGAGGATCATTGAAAATAGAGTGAAAACAAATATAGAAAAGGTGA
TGCATGCACGCTCTGTTGATATTCTCTTTGGTACTCGACAAAGTAAAGCA
CAATACGTTGATCAAAGGTCTGCGTTATATATGGAGTCAAAGAAAGATGC
AGTTGCTCGCACAGAAAAGcGTAAACTTGATGAGGAATCTGGCAAATTTA
GAAAAAGACGCCACTGCACTAATTTCGAAGAGGTAGAGTTTGACAAGGCT
GCTATGCTAGAAGAAGTTAGGGGTATGAAAGGTCAAAAGGAGGTCAATCG
GTACCAATGCCCAAATGTTACTCACATATCAGAAAGCAACTTTTAGGTTA
CTGAATCAGGTCTCCAACACCGGCTAACTGACAGTGAAAGGAAGAAGAAT
GTGAGGATCATTGAAAATAGAGTGAAAACAAATATAGAAAAGGTGATGCA
TGCACGCTCTGTTGATATTCTCTTTGGTACTCGACAAAGTAAAGCACAAT
ACGTTGATCAAAGGTCTGCGTTATATATGGAGTCAAAGAAAGATGCAGTT
GCTCGCACAGAAAAGcGTAAACTTGATGAGGAATCTGGCAAATTTAGAAA
AAGACGCCACTGCACTAATTTCGAAGAGGTAGAGTTTGACAAGGCTGCTA
TGCTAGAAGAAGTTAGGGGTATGAAAGGTCAAAAGGAGGTCAATCGGTAC
CAATGCCCAAATGTTACTCACATATCAGAAAGCAACTTTTAGGTTACTGA
ATCAGGTCTCCAACACCGGCTAACTGACAGTGAAAGGAAGAAGAATGTGA
GGATCATTGAAAATAGAGTGAAAACAAATATAGAAAAGGTGATGCATGCA
CGCTCTGTTGATATTCTCTTTGGTACTCGACAAAGTAAAGCACAATACGT
TGATCAAAGGTCTGCGTTATATATGGAGTCAAAGAAAGATGCAGTTGCTC
GCACAGAAAAGcGTAAACTTGATGAGGAATCTGGCAAATTTAGAAAAAGA
CGCCACTGCACTAATTTCGAAGAGGTAGAGTTTGACAAGGCTGCTATGCT
AGAAGAAGTTAGGGGTATGAAAGGTCAAAAGGAGGTCAATCGGTACCAAT
GCCCAAATGTTACTCACATATCAGAAAGCAACTTTTAGGTTACTGAATCA
GGTCTCCAACACCGGCTAACTGACAGTGAAAGGAAGAAGAATGTGAGGAT
CATTGAAAATAGAGTGAAAACAAATATAGAAAAGGTGATGCATGCACGCT
CTGTTGATATTCTCTTTGGTACTCGACAAAGTAAAGCACAATACGTTGAT
CAAAGGTCTGCGTTATATATGGAGTCAAAGAAAGATGCAGTTGCTCGCAC
AGAAAAGcGTAAACTTGATGAGGAATCTGGCAAATTTAGAAAAAGACGCC
ACTGCACTAATTTCGAAGAGGTAGAGTTTGACAAGGCTGCTATGCTAGAA
GAAGTTAGGGGTATGAAAGGTCAAAAGGAGGTCAATCGGTACCAATGCCC
AAATGTTACTCACATATCAGAAAGCAACTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037089-exon-sc0001569-1491911889:4352..4449 | TCONS_00037089-exon-sc0001569-1491911889:4352..4449 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1510915933:4352..4449 | TCONS_00037089-exon-sc0001569-1510915933:4352..4449 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1575043694:4352..4449 | TCONS_00037089-exon-sc0001569-1575043694:4352..4449 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1491911889:5602..5725 | TCONS_00037089-exon-sc0001569-1491911889:5602..5725 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1510915933:5602..5725 | TCONS_00037089-exon-sc0001569-1510915933:5602..5725 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1575043694:5602..5725 | TCONS_00037089-exon-sc0001569-1575043694:5602..5725 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1491911889:6224..6342 | TCONS_00037089-exon-sc0001569-1491911889:6224..6342 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1510915933:6224..6342 | TCONS_00037089-exon-sc0001569-1510915933:6224..6342 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1575043694:6224..6342 | TCONS_00037089-exon-sc0001569-1575043694:6224..6342 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1491911889:7210..7398 | TCONS_00037089-exon-sc0001569-1491911889:7210..7398 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1510915933:7210..7398 | TCONS_00037089-exon-sc0001569-1510915933:7210..7398 | Clytia hemisphaerica | exon |
| TCONS_00037089-exon-sc0001569-1575043694:7210..7398 | TCONS_00037089-exon-sc0001569-1575043694:7210..7398 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001569 | supercontig | sc0001569:4352..7398 + |
Blast
The following BLAST results are available for this feature:
|
