TCONS_00037087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037087
Unique NameTCONS_00037087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037087 ID=TCONS_00037087|Name=TCONS_00037087|organism=Clytia hemisphaerica|type=transcript|length=396bp
AGAAAGTAGAGATAtagaagaaaatagaaaatattcaCCTCTTTTGACGT
TGAAAGAATCGATAACTTGTTTCAAAATGTCTTTACTTGCTTTATTTTGT
TCATTAATGAGGATcgttgaaaaagttgaacagGTCGACACCATCAGCAG
GCAAAGGAACTTTAACAAACGATGTATCACGGCAACTTTCCAGTAATGCT
TCTTTTACATGAATGTCAATACTTAGAGTGGCAATCAAATAATTGCCATT
GTCAACAACAACTGTTGAGTTTGAATtacccattttgatttttcacttCA
AATATTTCGTTTATACTAAATTAGGTGAAAGAAACATTATTAGCCTACTT
AtttataattttgaattttaggccattaacacatttataatagGAG
Run BLAST on NCBI

transcript from alignment at sc0001568:41373..42169-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037087 ID=TCONS_00037087|Name=TCONS_00037087|organism=Clytia hemisphaerica|type=transcript|length=797bp|location=Sequence derived from alignment at sc0001568:41373..42169- (Clytia hemisphaerica)
AGAAAGTAGAGATATAGAAGAAAATAGAAAATATTCACCTCTTTTGACGT
TGAAAGAATCGATAACTTGTTTCAAAATGTCTTTACTTGCTTTATTTTGT
TCATTAATGAGGTGAGTTTGCATGTTTGTTATCAGCGTCTGGTGGAAGTT
CATAAAAGTTTTCAAGTCAATTTCTACAGTCTTGTTTCTTAAGTTATTAA
AATCATTCATTTTAGCATAGTTTAGTTTGATCAGCAGCTTTTTAATATCG
TCCATCGTGTCATCAAATTTCTGTTGCTGCTTAAACTCTTCCGGGTTGCC
GTGTTTAATACCATTTCTAGACTTCTGAGCATCCTTGATAATTGCTTTGG
AAGAATTTGGTAGAAAAAGAAATTCCCCAGCAACACGAGTTATGATAGTC
ACGTCCCAATTTTTGGACTCCGTTAAACAATTTTGTGGTAAGAGTAAATC
GTATTGATCTTGATAAATAGATTTTTGTTTCAACAAAGAGTCTAGCCTCC
TTTTCCTCTGAGGATCGTTGAAAAAGTTGAACAGGTCGACACCATCAGCA
GGCAAAGGAACTTTAACAAACGATGTATCACGGCAACTTTCCAGTAATGC
TTCTTTTACATGAATGTCAATACTTAGAGTGGCAATCAAATAATTGCCAT
TGTCAACAACAACTGTTGAGTTTGAATTACCCATTTTGATTTTTCACTTC
AAATATTTCGTTTATACTAAATTAGGTGAAAGAAACATTATTAGCCTACT
TATTTATAATTTTGAATTTTAGGCCATTAACACATTTATAATAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021928XLOC_021928Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037087-exon-sc0001568-1575043694:42059..42169TCONS_00037087-exon-sc0001568-1575043694:42059..42169Clytia hemisphaericaexon
TCONS_00037087-exon-sc0001568-1575043694:41373..41657TCONS_00037087-exon-sc0001568-1575043694:41373..41657Clytia hemisphaericaexon
TCONS_00037087-exon-sc0001568-1510915933:42059..42169TCONS_00037087-exon-sc0001568-1510915933:42059..42169Clytia hemisphaericaexon
TCONS_00037087-exon-sc0001568-1510915933:41373..41657TCONS_00037087-exon-sc0001568-1510915933:41373..41657Clytia hemisphaericaexon
TCONS_00037087-exon-sc0001568-1491911889:42059..42169TCONS_00037087-exon-sc0001568-1491911889:42059..42169Clytia hemisphaericaexon
TCONS_00037087-exon-sc0001568-1491911889:41373..41657TCONS_00037087-exon-sc0001568-1491911889:41373..41657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001568supercontigsc0001568:41373..42169 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.353851	0	0	0	0.399321	0	0	0	0	0	0	0	0.437917	0	0	0.669477	0.293602	0.730277	0	0	4.27975	2.18481	0.0301817	1.71618	0	0	12.1936	10.217	6.8523	10.4024
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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