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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037046 ID=TCONS_00037046|Name=TCONS_00037046|organism=Clytia hemisphaerica|type=transcript|length=903bp
taAAAGAAGATGGCAATCCTAGCCCAATGAGGACCCCAAGGAAATCATGG
TCGACCGAAGAAGATGCCATAATACAATCTGCTTTGTCTAATGGGACTCC
ATTCAAAGACATTAACGTTGACGCAAGTCCTCGACAGATTCGTGACCACG
TGAGGCATATTAAACGTAAAGGCCGAAACAGCTCGGACAAAGAGAGAGTA
ACAATACCTGTATCTGCAACCCTTAATGAAGAAGATGAACATGATCACAG
CACGATACGGATGGCCCCTAGGTCTCCTCCAAGGATGGAAATATTTCACA
CTGAGGGAGATAGACACTCTTTATGGCCGCCAGTTGATGTGCTAACACTT
GAAAAATATGGTCAAGATTTCATTGACAAGAAACAGAAAATGAACGATAA
ATCNGTGGTAACACTTGAAAAATATGGTCAAGATTTCATTGACAAGAAAC
AGAAAATGAACAATAAATTCATTAAACAACTGGGTTATctaagtgaaaaa
tattccttgCAACAGATTAGATCAAGAGTGCAACATCAAagaaacaagca
agcaaaggaGAAGGATGGAGAAAAGTGATTCTACAACAAAGTGATTGGAC
ATCATGATCCTGTTTTCTTATATTTGTAACATATTTCTTTTGTCTATCGT
GCGTTAAGGGAAGAAAATCTCTCGTTTTCGAGACTTACTCCTAAAACTAG
CAATCCCAAGTCAAAATAGGCTATTCTATTATAGGTGAATAGCATTGATA
GGGCAATTTTTTCCGTCCATCCTTGGACTACGTTTTTGGTATAACTTGAA
TTGTTTTGCTACCAGGTTTTCCATTCTTTGGGAGANgctagtgcactgta
agggtaggaaattacaaaactgcactgaactgcactgtaagggtaggaaa
ttg Run BLAST on NCBI protein sequence of TCONS_00037046-protein >TCONS_00037046-protein ID=TCONS_00037046-protein|Name=TCONS_00037046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
KEDGNPSPMRTPRKSWSTEEDAIIQSALSNGTPFKDINVDASPRQIRDHV
RHIKRKGRNSSDKERVTIPVSATLNEEDEHDHSTIRMAPRSPPRMEIFHT
EGDRHSLWPPVDVLTLEKYGQDFIDKKQKMNDKXVVTLEKYGQDFIDKKQ
KMNNKFIKQLGYLSEKYSLQQIRSRVQHQRNKQAKEKDGEK Run BLAST on NCBI transcript from alignment at sc0001562:24317..27879+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037046 ID=TCONS_00037046|Name=TCONS_00037046|organism=Clytia hemisphaerica|type=transcript|length=3563bp|location=Sequence derived from alignment at sc0001562:24317..27879+ (Clytia hemisphaerica)
taAAAGAAGATGGCAATCCTAGCCCAATGAGGACCCCAAGGAAATCATGG
TCGACCGAAGAAGATGCCATAATACAATCTGCTTTGTCTAATGGGACTCC
ATTCAAAGACATTAACGTTGACGCAAGTCCTCGACAGATTCGTGACCACG
TGAGGCATATTAAACGTAAAGGCCGAAACAGCTCGGACAAAGAGAGAGTA
ACAATACCTGTATCTGCAACCCTTGTGAGttcaatttcattgtttcttta
agAATAAATATGATCAGGAAGGGTAGCATTTGTTGTGTATTTTCTACTGT
GGAATCGCGCAGTTCCAACTTTTATTCTTCGAACTAATTAGCCTATTTAA
TTCACTATACGGGGGTGGGTTTGACGACCTTTTCTTAGCTCAAAATCGTT
TTCGCCATCTTTCTAGAACATGCATTTAAACTGTGAATATATTATTTAAA
CCCCTGGAAAAAATTCTATACCCACTTTATTGAAGACCGTGCTTTGAGCT
CCGTCCCTTGTCGAAAAAAGGCAAAAGTGAAATAGAGCTAAAACGAtcaa
aaatcactaaaaagggCCAGAATTGGCCTACTTCAAAGGTTAATATCGTT
ACTAGGGACATAGCTAGAAGCCTGTTCTTTATCCAGAGTCTATGATAAAT
CCTTGATACAAACAGCTGCTATTGCCACAAACAGCatatttttttaagtt
tcttcattttcatgtacTTCTTGTAGAATGAAGAAGATGAACATGATCAC
AGCACGATACGGATGGCCCCTAGGTCTCCTCCAAGGATGGAAATATTTCA
CGTAAGTGCTTAGAAAAGATGATTTCCCGTCCCcatgaaactttttttaa
ttcgttatgtgcgttaaaatttttctttttccgtGCTACAACAACAtctt
caacatttttcaaatagtgTGCTTCTACAGTGTGTCCGGACAAAATTTAt
ctaaagaaaaatcttttacgTTCAATTTCTTTTAATGGCGTCtattaggc
tatttttctcactcaagtgagttacggcatgtccaaagaaaaagtgaacc
agttccactcattttcaaaatgtcgaacatagctggaaagaagcgccttg
tgatgtagatcaacgtgataggtgttagaaaaatttaacttaaggctata
agaagttatagcccaaaaacctgtattatgacgtcataaacattacataa
cattacgtcataaaactaaaaatttgaatatctcgtgaactaaaagtcat
ataaacgtcaaattttgaccacaaatagataTTGATGTTAGAAAATTTCT
GAGTTAAAAATCCTTTGaaaataatgatgacgtcatttatNAATAGATAT
TGATGTAAGAAAATTTCtgagttaaaaatcttttgaaaaaaatgatgacg
tcatttattatagccaaaaatcgaaaattgcttaaaaatgctgacgtcat
catttttcaggagatttcgaaaattttactTCTAGAGAATTACGATATAT
TTGTTCTGTCAAAGTTACATATTGATATCATTAATAGTTTATgagttatt
taaattttaaatttcgtgaCGAaatgttacgtaatgtttatgacgtcata
atataggtttttgggctataacttcttatagccttaagttaaatttttct
aacacccatcacgttgatctacatcaTATGGCGCTTCTTTTCAGCTaggt
ttgacattttgaaagtgagtggaactggttcacttttaccttggacatgc
cgtaactcacttgagcaCAAAGAATTAATAAAGCTACATAGATATCTTTT
GAATAATCAACGAATTTCCGTGTTGCAGCAATGCAGTAAAATTCCTGAGG
GCGACTTTTTTGAggtctttattttttttgcctcCTTCGTTTAGACTGAG
GGAGATAGACACTCTTTATGGCCGCCAGTTGATGTGCTAACACTTGAAAA
ATATGGTCAAGATTTCATTGACAAGAAACAGAAAATGAACGATAAATCNG
TGGTAACACTTGAAAAATATGGTCAAGATTTCATTGACAAGAAACAGAAA
ATGAACAATAAATTCATTAAACAACTGGGTTATctaagtgaaaaatattc
cttgCAACAGATTAGATCAAGAGTGCAACATCAAagaaacaagcaagcaa
aggaGAAGGTTGGTAACTTTTTAAGTGAGATGATTACCGCTGAACCTACC
GAAGTCTCTAAAATTAAAGTGAATCCTCTAAGAACTATTTGCTAACAAGT
GCCGTTTTTGGACGAAACTTGAAGTCCTGTAAATTAACCCATTCCCGTCC
GTTCGTCCATCCGCCTGaacgttcgtctgttaccagcttttctcgggatc
agcttagttttttttctaattttttgcacaatgattcAAAATGGCAATGT
CAAAAATGTGAATGATGCCCAATTTTagataacaatttttttttttttgg
agggGGGGGGCAAAAAACTGTCTAAAATGGagctttttggactttgtgcg
aaaaattgctttgtaagtttttcctgattttttgcacaaagatgacGGCT
CGGTTCTCTAAACGCTGGCTGAAACGATTTTTCACGGACATTTTATTGGC
CATAGAAATTGGATTTTCgtaattgaatttatttttgtttaactATTTAC
ATGAATAACCAGCTTCTCTCACTATTCGCTAACTATTTTTTCTGAATCTT
TGCATCTGTatcaatgcccaaaacttgcgGTGCCTGATTTCGGAAAAGAA
CTACCTTAAaataggttttttggacttaatTTCTGGATTTCTTCCCCATA
ATAGATATGCAGTAGTACATACTTCCGAAAATGTGCTGAAacctattttc
gaaaaaaaaaattttacgacCTGTAGAACTGGCTGGTTCAACTGATATAA
TTGTTCCGATATAGAAAAAGTTCTAAATGGTGATGACTAAATTTaataat
tatttcattttatttgcaGTGAAATAAATCTTTTGTATTCGTAAAATTCT
TAGTAATAAtggccggaacagccgaaagcTGTCATAAAACGGTTCTACTT
CATATTTACAAGCTCTAGTCTGTACTTCCTGTTGTTGTCATTTAATCATC
AGGCAGGTCCATTTAGCATATTGCTTGTTATACTTGGATCTGGTAGTTTA
AGTTCGACGGGGTTAAGTTCATTGAGATTCTACCTGAAGGTTAATTAATT
AAATGTAAATTATTTGTTTATAGGATGGAGAAAAGTGATTCTACAACAAA
GTGATTGGACATCATGATCCTGTTTTCTTATATTTGTAACATATTTCTTT
TGTCTATCGTGCGTTAAGGGAAGAAAATCTCTCGTTTTCGAGACTTACTC
CTAAAACTAGCAATCCCAAGTCAAAATAGGCTATTCTATTATAGGTGAAT
AGCATTGATAGGGCAATTTTTTCCGTCCATCCTTGGACTACGTTTTTGGT
ATAACTTGAATTGTTTTGCTACCAGGTTTTCCATTCTTTGGGAGANgcta
gtgcactgtaagggtaggaaattacaaaactgcactgaactgcactgtaa
gggtaggaaattg Coding sequence (CDS) from alignment at sc0001562:24317..27879+ >TCONS_00037046 ID=TCONS_00037046|Name=TCONS_00037046|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at sc0001562:24317..27879+ (Clytia hemisphaerica)
AAAGAAGATGGCAATCCTAGCCCAATGAGGACCCCAAGGAAATCATGGTC
GACCGAAGAAGATGCCATAATACAATCTGCTTTGTCTAATGGGACTCCAT
TCAAAGACATTAACGTTGACGCAAGTCCTCGACAGATTCGTGACCACGTG
AGGCATATTAAACGTAAAGGCCGAAACAGCTCGGACAAAGAGAGAGTAAC
AATACCTGTATCTGCAACCCTTAATGAAGAAGATGAACATGATCACAGCA
CGATACGGATGGCCCCTAGGTCTCCTCCAAGGATGGAAATATTTCACACT
GAGGGAGATAGACACTCTTTATGGCCGCCAGTTGATGTGCTAACACTTGA
AAAATATGGTCAAGATTTCATTGACAAGAAACAGAAAATGAACGATAAAT
CNGTGGTAACACTTGAAAAATATGGTCAAGATTTCATTGACAAGAAACAG
AAAATGAACAATAAATTCATTAAACAACTGGGTTATctaagtgaaaaata
ttccttgCAACAGATTAGATCAAGAGTGCAACATCAAagaaacaagcaag
caaaggaGAAGGATGGAGAAAAGTGAAAAGAAGATGGCAATCCTAGCCCA
ATGAGGACCCCAAGGAAATCATGGTCGACCGAAGAAGATGCCATAATACA
ATCTGCTTTGTCTAATGGGACTCCATTCAAAGACATTAACGTTGACGCAA
GTCCTCGACAGATTCGTGACCACGTGAGGCATATTAAACGTAAAGGCCGA
AACAGCTCGGACAAAGAGAGAGTAACAATACCTGTATCTGCAACCCTTAA
TGAAGAAGATGAACATGATCACAGCACGATACGGATGGCCCCTAGGTCTC
CTCCAAGGATGGAAATATTTCACACTGAGGGAGATAGACACTCTTTATGG
CCGCCAGTTGATGTGCTAACACTTGAAAAATATGGTCAAGATTTCATTGA
CAAGAAACAGAAAATGAACGATAAATCNGTGGTAACACTTGAAAAATATG
GTCAAGATTTCATTGACAAGAAACAGAAAATGAACAATAAATTCATTAAA
CAACTGGGTTATctaagtgaaaaatattccttgCAACAGATTAGATCAAG
AGTGCAACATCAAagaaacaagcaagcaaaggaGAAGGATGGAGAAAAGT
GAAAAGAAGATGGCAATCCTAGCCCAATGAGGACCCCAAGGAAATCATGG
TCGACCGAAGAAGATGCCATAATACAATCTGCTTTGTCTAATGGGACTCC
ATTCAAAGACATTAACGTTGACGCAAGTCCTCGACAGATTCGTGACCACG
TGAGGCATATTAAACGTAAAGGCCGAAACAGCTCGGACAAAGAGAGAGTA
ACAATACCTGTATCTGCAACCCTTAATGAAGAAGATGAACATGATCACAG
CACGATACGGATGGCCCCTAGGTCTCCTCCAAGGATGGAAATATTTCACA
CTGAGGGAGATAGACACTCTTTATGGCCGCCAGTTGATGTGCTAACACTT
GAAAAATATGGTCAAGATTTCATTGACAAGAAACAGAAAATGAACGATAA
ATCNGTGGTAACACTTGAAAAATATGGTCAAGATTTCATTGACAAGAAAC
AGAAAATGAACAATAAATTCATTAAACAACTGGGTTATctaagtgaaaaa
tattccttgCAACAGATTAGATCAAGAGTGCAACATCAAagaaacaagca
agcaaaggaGAAGGATGGAGAAAAGTGAAAAGAAGATGGCAATCCTAGCC
CAATGAGGACCCCAAGGAAATCATGGTCGACCGAAGAAGATGCCATAATA
CAATCTGCTTTGTCTAATGGGACTCCATTCAAAGACATTAACGTTGACGC
AAGTCCTCGACAGATTCGTGACCACGTGAGGCATATTAAACGTAAAGGCC
GAAACAGCTCGGACAAAGAGAGAGTAACAATACCTGTATCTGCAACCCTT
AATGAAGAAGATGAACATGATCACAGCACGATACGGATGGCCCCTAGGTC
TCCTCCAAGGATGGAAATATTTCACACTGAGGGAGATAGACACTCTTTAT
GGCCGCCAGTTGATGTGCTAACACTTGAAAAATATGGTCAAGATTTCATT
GACAAGAAACAGAAAATGAACGATAAATCNGTGGTAACACTTGAAAAATA
TGGTCAAGATTTCATTGACAAGAAACAGAAAATGAACAATAAATTCATTA
AACAACTGGGTTATctaagtgaaaaatattccttgCAACAGATTAGATCA
AGAGTGCAACATCAAagaaacaagcaagcaaaggaGAAGGATGGAGAAAA
GTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037046-exon-sc0001562-1491911889:24317..24540 | TCONS_00037046-exon-sc0001562-1491911889:24317..24540 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1510915933:24317..24540 | TCONS_00037046-exon-sc0001562-1510915933:24317..24540 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1575043694:24317..24540 | TCONS_00037046-exon-sc0001562-1575043694:24317..24540 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1491911889:25043..25117 | TCONS_00037046-exon-sc0001562-1491911889:25043..25117 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1510915933:25043..25117 | TCONS_00037046-exon-sc0001562-1510915933:25043..25117 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1575043694:25043..25117 | TCONS_00037046-exon-sc0001562-1575043694:25043..25117 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1491911889:26211..26474 | TCONS_00037046-exon-sc0001562-1491911889:26211..26474 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1510915933:26211..26474 | TCONS_00037046-exon-sc0001562-1510915933:26211..26474 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1575043694:26211..26474 | TCONS_00037046-exon-sc0001562-1575043694:26211..26474 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1491911889:27540..27879 | TCONS_00037046-exon-sc0001562-1491911889:27540..27879 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1510915933:27540..27879 | TCONS_00037046-exon-sc0001562-1510915933:27540..27879 | Clytia hemisphaerica | exon |
| TCONS_00037046-exon-sc0001562-1575043694:27540..27879 | TCONS_00037046-exon-sc0001562-1575043694:27540..27879 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001562 | supercontig | sc0001562:24317..27879 + |
Blast
The following BLAST results are available for this feature:
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