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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037030 ID=TCONS_00037030|Name=TCONS_00037030|organism=Clytia hemisphaerica|type=transcript|length=848bp
taccaaCGTCAGTAtgatcaagacaagatttgacgtcaaatcacagtaga
ACTGACAGTTAGTTGGCCTTAAAGCGTCACAATTTtggtcacaaaaagtt
ttcccgggccttaTCAGCGTCCTCCCTCTCCAAAATATCTTATAATATAC
TGTTCTTCGGAATAGACTTAAAATGGTTAAGTAGGTCgtaaaaagatgtc
acggaactcCAGGCTTGGGGGCTTAATATGGAATGTTCTAAGAATGCTAA
AGAACATTCTTGAATGTTCTGAACGAACATCCCTGTCATTCCCTTTTATT
AACTAGTTTAAGGATGTCTTGGAATGTTCACAGCGTTTTAGGAACGCTAT
GGAACGTTCATAAATGTGACCATTCCTAAAAACAACTTGTTACAGTACTG
CAGCTATATGTACAAAATAATAAAGATTAGGTACATTCATTGACAATGTC
CCAAGTTTAATTATCTTTCAGCTTCCAAATTTTaggtttaataaaaaaaa
ttggaatcAAAATGTCTGACGACTTTACAAAATATTTGATGGCTGCAGGA
AATGATATAGGGAAAGAAAAATCACCAAATAAGCCAGATATTCTGACTTT
AATTCAAAAGTTAGAGGCAACCATAGCTGAATTACAAGCAACAATAAACA
AGAGGAATGTGCAATTGAAGCATGTGAAATCCTATTATAAATCAATTGAT
TTAACTATTTCTCAAATTAACGGAATCACCAAAGCCCTAGAGAATATATA
TAACAAGAAGAAAGTGCTAGCTGAAAGATCCCAACCAGAAAGCTCTTTAT
TATTTGCACGGTCAAAAAGCAAAAATGCTCCTGGAAAAGAATCTCCTT Run BLAST on NCBI transcript from alignment at sc0001558:48260..51801+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037030 ID=TCONS_00037030|Name=TCONS_00037030|organism=Clytia hemisphaerica|type=transcript|length=3542bp|location=Sequence derived from alignment at sc0001558:48260..51801+ (Clytia hemisphaerica)
taccaaCGTCAGTAtgatcaagacaagatttgacgtcaaatcacagtaga
ACTGACAGTTAGTTGGCCTTAAAGCGTCACAATTTtggtcacaaaaagtt
ttcccgggccttaTCAGCGTCCTCCCTCTCCAAAATATCTTATAATATAC
TGTTCTTCGGAATAGACTTAAAATGGTTAAGTAGGTCgtaaaaagatgtc
acggaactcCAGGCTTGGGGGCTTAATATGGAATGTTCTAAGAATGCTAA
AGAACATTCTTGAATGTTCTGAACGAACATCCCTGTCATTCCCTTTTATT
AACTAGTTTAAGGATGTCTTGGAATGTTCACAGCGTTTTAGGAACGCTAT
GGAACGTTCATAAATGTGACCATTCCTAAAAACAACTTGTTACAGTACTG
CAGCTATATGTACAAAATAATAAAGATTAGGTACATTCATTGACAATGTC
CCAAGTTTAATTATCTTTCAGCTTCCAAATTTTaggtttaataaaaaaaa
ttggaatcAAAATGTCTGACGACTTTACAAAATATTTGATGGCTGCAGGA
AATGATATAGGGAAAGAAAAATCACCAAATAAGCCAGATATTCTGACTTT
AATTCAAAAGTTAGGTGAGTCTTGTTGATAAATTCAATATTTTGCATAAC
AAATTGATGATTTAAGAATGATGTATAACTCTTTACCATAGCTTCAGCCC
GCCTTACTTTTTTTTgcggggggggggctaagaaatattttggcctttaa
agtacctgggggctaaaattaccNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcagctaatttcaaaa
gatctcttatcttactattaaatcaaatataaaaagcaaaagatttgtaa
acataaatattaatacaagtaaaatttagttttaattTATCAGTACTGAA
CTCGCATATATTTTTATTGACTCTCTACGGGGGCaggagaacaatgtttt
tgtttttgttttagtttatcttgggacctgaagtgttattaggggaccta
gcacaaggcaattttttggggggagctaaattgttggggggacctTACTT
TGTTGGGgggggggagctagaaacctggctgaagctatgttTACTTGATG
TCCAAATTTTCTAAATCAGATATACTTTATGATTCCTCATACTGTATTGC
TTTGAATGAACTGTGAATAATTGTTTCAATAAACACCAGCTTAAACCAGG
GATATGATAAAGCGTAGCTGGATGATGAACGAGAACTCCTGAGGGAACTG
ATTCTTTGTCTTATTTATTGttaactgttcataatagaaaccTATCTCTG
TACCCTTGAGTGTTctatctttataagaaaaaaagaccAGGAAAGTTTTT
CATACCGTACTTCTGCTCAGCCCTTGCTAAGATTGTAACCGTTTtcataa
atataaattttgtatTAGATAGTCAAGAGCTTTCTTGTAAATGAAGTTTA
TTTTTTATCAGCATGTGCCCTGATTTTGACTGGCTTTTCGTGATTTCTCT
TGAAAAACTTCacatgtaaatattttgacaaattcaTTTCCAATTGATAT
GAATTTTTTTCCACAATTAGGCACAGCAAGTCTCTATCTGAAAATATTAG
TGAGAAAATGAGGCACCCTGCGGTGCAGCGCagtatttcaaattaaaaag
tgCTACTTAGAGCCTTATAAAAGACATTTCTTATAATTTTAGTAATAATG
ACAatggttttcaactttttaaattgtCTTTCACGAATGTTTTACAGAGT
CTCTTGATAATTGACAATCTTTAATCGTGAAGGATATTTGCAGCAGAAAA
ATCATTGGATAAGGCcataaaaaaaagtagttttgtttccggaaatgcgg
gtgacgaaaaaaaatctcacccgggcggccggaaaatatttttttttttc
aattttcctNNNNNNNNNTATTTGCGGCCgggtgagatatatttttttcc
aaaaaaaagttcacccggccgatttccggaaacaagactacttttttttt
tggcctaaGAAGAAATCCAAATTCATGGGTTTGCAATTAAAGAAGTTAAA
CTTcacatcaaattttaatgtcagggtacagagatagaacaagggtTTTT
TCAATGTGCTTTATCCAGCTACGCTTTATCATATCCCTGCTTAAACAAAC
CCCCTTTTGTAATAAACATCTCCTCTAGGATGGGTGTTTAATTTGAAACA
AGAAGgatgaaaaaaaacttagaaatatatcttttttatgCAAACTGATT
TTTACCCATTCCTACGTCCCTGAATGGAAATATCTATactcaaataataa
taataataacgaaAAGGCAAATAGGCTCACATTCGGAGAAGTGTTAAGCT
ATCTAAGAAATCTTGGACCTTTTACTTTAGGCAAACCAattaaaatcttc
cttttttttccCTCAGAGGCAACCATAGCTGAATTACAAGCAACAATAAA
CAAGAGGAATGTGCAATTGAAGCATGTGAAATCCTATTATAAATCAATTG
ATTTAACTATTTCTCAAATTAACGGAATCACCAAAGCCCTAGAGAATATA
TATAACAAGAAGAAAGTGCTAGCTGAAAGGTACATTATTAGAACAATAAA
GAATGTTAGTAGTGTGATCTGAAGATAGTCAAAAATGGGCTAATTAAAAG
ACAATATGAATCAGAGGTCAATATTAAAATTTCACATTTCATTGATGTTT
AGTGACATGTTGGTAAAGGAAAGAAACTATAAACTTCTTTTATCAAAGAT
ACATATTGACTAAAATGGCACAGATAAGAAGAATTTCATCTTGTAATAAA
TTTTCcttgtttccaaatcttttctGCACTTAGGAATGTGTTATGAAGCT
GGAAGTAAATTTGAACAAGGGCTTTATCTTATCTTTGTATAAGTGCTTGA
TAATAGAAAACAGGTAGAActgattttatttgaaaagtaaaattctcaaa
atcctTTTTACCAGAgtcaaaattattcaaaatgggATGAGATTGTTTCA
GCTCTTTTCCAAACACACTGTATTTTTATAGTCTCGTATGAAACAGGAAT
ACTTTAGTAATAACAAAGCCTTTGAATTATGGATCAATTAAGAATAGGGA
AATAGTTCATCTTGAATGATAAAATACCTTGTCCATCAAATTTTAGATCC
CAACCAGAAAGCTCTTTATTATTTGCACGGTCAAAAAGCAAAAATGTTCC
TGGAAAAGAATCTCCTTGCATGGTGAGTTGTTGTTACTAGTATCANAAAT
ACCTTGTCCATCAAATTTTAGATCCCAACCAGAAAGCTCTTTATTATTTG
CACGGTCAAAAAGCAAAAATGCTCCTGGAAAAGAATCTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037030-exon-sc0001558-1491911889:48260..48873 | TCONS_00037030-exon-sc0001558-1491911889:48260..48873 | Clytia hemisphaerica | exon |
| TCONS_00037030-exon-sc0001558-1510915933:48260..48873 | TCONS_00037030-exon-sc0001558-1510915933:48260..48873 | Clytia hemisphaerica | exon |
| TCONS_00037030-exon-sc0001558-1575043694:48260..48873 | TCONS_00037030-exon-sc0001558-1575043694:48260..48873 | Clytia hemisphaerica | exon |
| TCONS_00037030-exon-sc0001558-1491911889:50876..51038 | TCONS_00037030-exon-sc0001558-1491911889:50876..51038 | Clytia hemisphaerica | exon |
| TCONS_00037030-exon-sc0001558-1510915933:50876..51038 | TCONS_00037030-exon-sc0001558-1510915933:50876..51038 | Clytia hemisphaerica | exon |
| TCONS_00037030-exon-sc0001558-1575043694:50876..51038 | TCONS_00037030-exon-sc0001558-1575043694:50876..51038 | Clytia hemisphaerica | exon |
| TCONS_00037030-exon-sc0001558-1491911889:51731..51801 | TCONS_00037030-exon-sc0001558-1491911889:51731..51801 | Clytia hemisphaerica | exon |
| TCONS_00037030-exon-sc0001558-1510915933:51731..51801 | TCONS_00037030-exon-sc0001558-1510915933:51731..51801 | Clytia hemisphaerica | exon |
| TCONS_00037030-exon-sc0001558-1575043694:51731..51801 | TCONS_00037030-exon-sc0001558-1575043694:51731..51801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001558 | supercontig | sc0001558:48260..51801 + |
Blast
The following BLAST results are available for this feature:
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