XLOC_021882 (gene) - C. hemisphaerica

Overview
NameXLOC_021882
Unique NameXLOC_021882
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001558:48260..51801+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_021882 ID=XLOC_021882|Name=XLOC_021882|organism=Clytia hemisphaerica|type=gene|length=3542bp|location=Sequence derived from alignment at sc0001558:48260..51801+ (Clytia hemisphaerica)
taccaaCGTCAGTAtgatcaagacaagatttgacgtcaaatcacagtaga
ACTGACAGTTAGTTGGCCTTAAAGCGTCACAATTTtggtcacaaaaagtt
ttcccgggccttaTCAGCGTCCTCCCTCTCCAAAATATCTTATAATATAC
TGTTCTTCGGAATAGACTTAAAATGGTTAAGTAGGTCgtaaaaagatgtc
acggaactcCAGGCTTGGGGGCTTAATATGGAATGTTCTAAGAATGCTAA
AGAACATTCTTGAATGTTCTGAACGAACATCCCTGTCATTCCCTTTTATT
AACTAGTTTAAGGATGTCTTGGAATGTTCACAGCGTTTTAGGAACGCTAT
GGAACGTTCATAAATGTGACCATTCCTAAAAACAACTTGTTACAGTACTG
CAGCTATATGTACAAAATAATAAAGATTAGGTACATTCATTGACAATGTC
CCAAGTTTAATTATCTTTCAGCTTCCAAATTTTaggtttaataaaaaaaa
ttggaatcAAAATGTCTGACGACTTTACAAAATATTTGATGGCTGCAGGA
AATGATATAGGGAAAGAAAAATCACCAAATAAGCCAGATATTCTGACTTT
AATTCAAAAGTTAGGTGAGTCTTGTTGATAAATTCAATATTTTGCATAAC
AAATTGATGATTTAAGAATGATGTATAACTCTTTACCATAGCTTCAGCCC
GCCTTACTTTTTTTTgcggggggggggctaagaaatattttggcctttaa
agtacctgggggctaaaattaccNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcagctaatttcaaaa
gatctcttatcttactattaaatcaaatataaaaagcaaaagatttgtaa
acataaatattaatacaagtaaaatttagttttaattTATCAGTACTGAA
CTCGCATATATTTTTATTGACTCTCTACGGGGGCaggagaacaatgtttt
tgtttttgttttagtttatcttgggacctgaagtgttattaggggaccta
gcacaaggcaattttttggggggagctaaattgttggggggacctTACTT
TGTTGGGgggggggagctagaaacctggctgaagctatgttTACTTGATG
TCCAAATTTTCTAAATCAGATATACTTTATGATTCCTCATACTGTATTGC
TTTGAATGAACTGTGAATAATTGTTTCAATAAACACCAGCTTAAACCAGG
GATATGATAAAGCGTAGCTGGATGATGAACGAGAACTCCTGAGGGAACTG
ATTCTTTGTCTTATTTATTGttaactgttcataatagaaaccTATCTCTG
TACCCTTGAGTGTTctatctttataagaaaaaaagaccAGGAAAGTTTTT
CATACCGTACTTCTGCTCAGCCCTTGCTAAGATTGTAACCGTTTtcataa
atataaattttgtatTAGATAGTCAAGAGCTTTCTTGTAAATGAAGTTTA
TTTTTTATCAGCATGTGCCCTGATTTTGACTGGCTTTTCGTGATTTCTCT
TGAAAAACTTCacatgtaaatattttgacaaattcaTTTCCAATTGATAT
GAATTTTTTTCCACAATTAGGCACAGCAAGTCTCTATCTGAAAATATTAG
TGAGAAAATGAGGCACCCTGCGGTGCAGCGCagtatttcaaattaaaaag
tgCTACTTAGAGCCTTATAAAAGACATTTCTTATAATTTTAGTAATAATG
ACAatggttttcaactttttaaattgtCTTTCACGAATGTTTTACAGAGT
CTCTTGATAATTGACAATCTTTAATCGTGAAGGATATTTGCAGCAGAAAA
ATCATTGGATAAGGCcataaaaaaaagtagttttgtttccggaaatgcgg
gtgacgaaaaaaaatctcacccgggcggccggaaaatatttttttttttc
aattttcctNNNNNNNNNTATTTGCGGCCgggtgagatatatttttttcc
aaaaaaaagttcacccggccgatttccggaaacaagactacttttttttt
tggcctaaGAAGAAATCCAAATTCATGGGTTTGCAATTAAAGAAGTTAAA
CTTcacatcaaattttaatgtcagggtacagagatagaacaagggtTTTT
TCAATGTGCTTTATCCAGCTACGCTTTATCATATCCCTGCTTAAACAAAC
CCCCTTTTGTAATAAACATCTCCTCTAGGATGGGTGTTTAATTTGAAACA
AGAAGgatgaaaaaaaacttagaaatatatcttttttatgCAAACTGATT
TTTACCCATTCCTACGTCCCTGAATGGAAATATCTATactcaaataataa
taataataacgaaAAGGCAAATAGGCTCACATTCGGAGAAGTGTTAAGCT
ATCTAAGAAATCTTGGACCTTTTACTTTAGGCAAACCAattaaaatcttc
cttttttttccCTCAGAGGCAACCATAGCTGAATTACAAGCAACAATAAA
CAAGAGGAATGTGCAATTGAAGCATGTGAAATCCTATTATAAATCAATTG
ATTTAACTATTTCTCAAATTAACGGAATCACCAAAGCCCTAGAGAATATA
TATAACAAGAAGAAAGTGCTAGCTGAAAGGTACATTATTAGAACAATAAA
GAATGTTAGTAGTGTGATCTGAAGATAGTCAAAAATGGGCTAATTAAAAG
ACAATATGAATCAGAGGTCAATATTAAAATTTCACATTTCATTGATGTTT
AGTGACATGTTGGTAAAGGAAAGAAACTATAAACTTCTTTTATCAAAGAT
ACATATTGACTAAAATGGCACAGATAAGAAGAATTTCATCTTGTAATAAA
TTTTCcttgtttccaaatcttttctGCACTTAGGAATGTGTTATGAAGCT
GGAAGTAAATTTGAACAAGGGCTTTATCTTATCTTTGTATAAGTGCTTGA
TAATAGAAAACAGGTAGAActgattttatttgaaaagtaaaattctcaaa
atcctTTTTACCAGAgtcaaaattattcaaaatgggATGAGATTGTTTCA
GCTCTTTTCCAAACACACTGTATTTTTATAGTCTCGTATGAAACAGGAAT
ACTTTAGTAATAACAAAGCCTTTGAATTATGGATCAATTAAGAATAGGGA
AATAGTTCATCTTGAATGATAAAATACCTTGTCCATCAAATTTTAGATCC
CAACCAGAAAGCTCTTTATTATTTGCACGGTCAAAAAGCAAAAATGTTCC
TGGAAAAGAATCTCCTTGCATGGTGAGTTGTTGTTACTAGTATCANAAAT
ACCTTGTCCATCAAATTTTAGATCCCAACCAGAAAGCTCTTTATTATTTG
CACGGTCAAAAAGCAAAAATGCTCCTGGAAAAGAATCTCCTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00037029TCONS_00037029Clytia hemisphaericatranscript
TCONS_00037030TCONS_00037030Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00037029-proteinTCONS_00037029-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001558supercontigsc0001558:48260..51801 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61	1.35	0.8	0.46	1.31	0.48	0.59	0.68	0.24	0.23	0	0.3	0.53	0.12	0.09	0.37	0.21	0.3	0	0	0.29	0.08	1.62	1.11	0.72	0.65	0.41	0.17	0.9	0.81