TCONS_00037009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037009
Unique NameTCONS_00037009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037009 ID=TCONS_00037009|Name=TCONS_00037009|organism=Clytia hemisphaerica|type=transcript|length=463bp
GGCGTGAGGAGCTCTTCTTATTTTTTAGAAGTGAGCTTTTTATTTACATG
AAAATTTGTGgcttaaaattgaattttacatTGATTTATGGCTTTATAAT
TTGTTCTGCTGATTATTGCTATGAATTTTTGCTGATGGTTTTAAAGAATT
ATATCCTTACAaaagaaagagaattttttaACCAGAAGTAATGGCTACAA
CACAAACCACTGTAAGTTACCGAAGAAATAGAGACTACTCGAGACAGTTT
AATTGGACATATGAATTAAATGAAGACCTCTATAAATGTTACAACGATGC
TAAAAGTCAACCGGGACGAGGGTATATGAaacgaatgaaaaataaatggG
ATTTATTACATCCTGAACTTTCTCATTTTAACGAAAAATATCTTCGTCAA
CAAGCCTTATACATCACACAAAGAGGTTATATTCGTGAAACTCAAACCGT
TGCTAATAACAAC
Run BLAST on NCBI

transcript from alignment at sc0001551:23..485

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037009 ID=TCONS_00037009|Name=TCONS_00037009|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at sc0001551:23..485 (Clytia hemisphaerica)
GTTGTTATTAGCAACGGTTTGAGTTTCACGAATATAACCTCTTTGTGTGA
TGTATAAGGCTTGTTGACGAAGATATTTTTCGTTAAAATGAGAAAGTTCA
GGATGTAATAAATCccatttatttttcattcgttTCATATACCCTCGTCC
CGGTTGACTTTTAGCATCGTTGTAACATTTATAGAGGTCTTCATTTAATT
CATATGTCCAATTAAACTGTCTCGAGTAGTCTCTATTTCTTCGGTAACTT
ACAGTGGTTTGTGTTGTAGCCATTACTTCTGGTtaaaaaattctctttct
ttTGTAAGGATATAATTCTTTAAAACCATCAGCAAAAATTCATAGCAATA
ATCAGCAGAACAAATTATAAAGCCATAAATCAatgtaaaattcaatttta
agcCACAAATTTTCATGTAAATAAAAAGCTCACTTCTAAAAAATAAGAAG
AGCTCCTCACGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021865XLOC_021865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037009-exon-sc0001551-1491911889:23..485TCONS_00037009-exon-sc0001551-1491911889:23..485Clytia hemisphaericaexon
TCONS_00037009-exon-sc0001551-1510915933:23..485TCONS_00037009-exon-sc0001551-1510915933:23..485Clytia hemisphaericaexon
TCONS_00037009-exon-sc0001551-1575043694:23..485TCONS_00037009-exon-sc0001551-1575043694:23..485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001551supercontigsc0001551:23..485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.419028	0.272413	0.158148	1.08307	0.376722	0	0.359151	0.168117	0.117702	0.583174	0.707553	0.279071	0	0.192943	0.317251	0.425574	0.314563	0	0	0	0	0.790453	0.16015	0.1456	0.449892	0	0.574571	0.408799	0.465089	1.10565
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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