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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037003 ID=TCONS_00037003|Name=TCONS_00037003|organism=Clytia hemisphaerica|type=transcript|length=1357bp
ttgcagtgaggattggtttaatTAATTactttcagcggggacaaaaattg
agtataatttcccaccgggacgatattttggccaatttttccagtgggat
gggttcccagtgggtctgtgagaagggggtgtttttgtAATAGTAAAGAC
TGATTTAACGTATGCTTACCTCTGTTTTGGATTGCATGTGATTTAGTTCT
TTCTTCGCTTTACAGCATGCAttcaaacaaagatggcagatgaTGATTTA
TAGAATCACAGGATTGTCTCAACCTAATTGCCCAGCTCTTCAGAAAAAGC
TCCCGACACTTCATCAAAGATGAAACTATTGGGAAACCCTTTTCACAATC
AATCCGAGCCTAATGAACAATATTCTACACATTCAAGGGCGAATTTATTC
CGACGGTCATATTCTGGGGAATGATGGGCTTGTGACACCAATGAACCATT
ATTAAAGAATGACCCTTTCTCGATCTCACACACACAGTGCTGAAGAATCA
ACCGATCGTCCAAGCATTTCTAATTTGCGAGACCAACAACCGAAAACATT
GGTAATAAGATATAATCGTGGGGGTTAGTGCACTAGGTGTTCTCCCATGC
GGTAGCTGTAATGAGACCTTTCGTGCTTATTATAAGAATTCAAGGCTAGG
CTAAAACGTAGGTCTTTGACAATGAGGTAAAAGAGTCGAATTTCCAAAGA
TATAAACCGTTAATTTACGCCACATAGTAGTCAATATGAACAGGACCTTT
TTGTTAGCCGGCATCTTGAATTTTTCATCCATCTCCTTTTAAGGGAACGC
TTACCATTTCGATACAATATTGCTGAACTACCAGAATTCGAAAATGTAAA
AggcaaaaaacaaacaaattgatagattcaatctgtcgtctgAATTATGG
CGCACATCCCTAAGCATCACTCCGGCTTCCCTTGGAAAGCGTGGAACCAG
AGAGATCCAGAGGACATGACCGTGTGTCCAATGTTCCTTGATTTTTTAAC
GTCTCCGTGTTCACACTGAATTAGAGACGACCTTGAATGGAAAGCTCAAT
CCTTTTTCTCTCAGAAGAAAATTTACTTCAAAGGATATAAAAGCGATGCC
ATTTAGCGCCAAGCCATAGAAGACACATAGGCTCACACAAAATTTTCCTC
GTGATTGACGCATTCCATTTCTCAAAAAACAAGCCAATCAGTTGACGATT
TTCTCGCAGCACATTTTGATTGGCTGATATAGCCAAAGTAGAGATTTTTC
ACtcttcttgattttttgattaTGGATGGAGgctttgtcaaaaattttca
agttaagtGAATCAATCTacttttcaaacttcaaaaagcttttgagaaat
ttgactC Run BLAST on NCBI transcript from alignment at sc0001551:29310..31406+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037003 ID=TCONS_00037003|Name=TCONS_00037003|organism=Clytia hemisphaerica|type=transcript|length=2097bp|location=Sequence derived from alignment at sc0001551:29310..31406+ (Clytia hemisphaerica)
ttgcagtgaggattggtttaatTAATTactttcagcggggacaaaaattg
agtataatttcccaccgggacgatattttggccaatttttccagtgggat
gggttcccagtgggtctgtgagaagggggtgtttttgtAATAGTAAAGAC
TGATTTAACGTATGCTTACCTCTGTTTTGGATTGCATGTGATTTAGTTCT
TTCTTCGCTTTACAGCATGCAttcaaacaaagatggcagatgaTGATTTA
TAGAATCACAGGATTGTCTCAACCTAATTGCCCAGCTCTTCAGGTAAGGC
ATTAGCCACGCAACGACAGTTGAAGCACTACTTATTAAAGATTATGGATN
TATTGCCCAGCTTTTCAGGTAAGTCATTAGCCACGCAACGACAGTTGAAG
CACTACttgttaaagggataatcagatggtttaaGATATTTGGCTAGTGT
AATCTttctattgtcctgagcaaaatctcagaatatttttgcttcacttt
ttacCAAAGTcgaagtttttgacttttagtgagaaaacaatcgaatttca
acgTACAAGAACCGTGTGAGaacccattttcagaaatttcaaattttcat
atcTCGATAAATTGGGAAAAAGTTACCCAAACATACTTTTACTCAAGCCC
GCACAAGCTTTCTGCAGGCcgaatatctcaaaccatctgattatcccttt
aaagatgatggattattttgcttcagctaGTGACGGAGAAGCTCTGTTTA
GTGTTCTAagtaagatatctgtggtttgTACAATCGTGTTTGAAGTCCTT
GCGGGGGAATTGTGTATGAGAATGGAAAAAATTATGTCGATGGAATTTGC
TGCAGTACAGTGTTTTGCTGCCACTAAAAAAAGAAGCCTAATCGTAATGG
ACTCTTTTAGCGTTTACGTTTACCAAAAAGACTCGGATAAAATAGGGGTG
TATGATTTGCtaaatttagatttaaatttgatttgttttagCGTTAGTGA
TTTGTTAattaaaaattcttttattcGTTTCAGAAAAAGCTCCCGACACT
TCATCAAAGATGAAACTATTGGGAAACCCTTTTCACAATCAATCCGAGCC
TAATGAACAATATTCTACACATTCAAGGGCGAATTTATTCCGACGGTCAT
ATTCTGGGGAATGATGGGCTTGTGACACCAATGAACCATTATTAAAGAAT
GACCCTTTCTCGATCTCACACACACAGTGCTGAAGAATCAACCGATCGTC
CAAGCATTTCTAATTTGCGAGACCAACAACCGAAAACATTGGTAATAAGA
TATAATCGTGGGGGTTAGTGCACTAGGTGTTCTCCCATGCGGTAGCTGTA
ATGAGACCTTTCGTGCTTATTATAAGAATTCAAGGCTAGGCTAAAACGTA
GGTCTTTGACAATGAGGTAAAAGAGTCGAATTTCCAAAGATATAAACCGT
TAATTTACGCCACATAGTAGTCAATATGAACAGGACCTTTTTGTTAGCCG
GCATCTTGAATTTTTCATCCATCTCCTTTTAAGGGAACGCTTACCATTTC
GATACAATATTGCTGAACTACCAGAATTCGAAAATGTAAAAggcaaaaaa
caaacaaattgatagattcaatctgtcgtctgAATTATGGCGCACATCCC
TAAGCATCACTCCGGCTTCCCTTGGAAAGCGTGGAACCAGAGAGATCCAG
AGGACATGACCGTGTGTCCAATGTTCCTTGATTTTTTAACGTCTCCGTGT
TCACACTGAATTAGAGACGACCTTGAATGGAAAGCTCAATCCTTTTTCTC
TCAGAAGAAAATTTACTTCAAAGGATATAAAAGCGATGCCATTTAGCGCC
AAGCCATAGAAGACACATAGGCTCACACAAAATTTTCCTCGTGATTGACG
CATTCCATTTCTCAAAAAACAAGCCAATCAGTTGACGATTTTCTCGCAGC
ACATTTTGATTGGCTGATATAGCCAAAGTAGAGATTTTTCACtcttcttg
attttttgattaTGGATGGAGgctttgtcaaaaattttcaagttaagtGA
ATCAATCTacttttcaaacttcaaaaagcttttgagaaatttgactC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037003-exon-sc0001551-1491911889:29310..29602 | TCONS_00037003-exon-sc0001551-1491911889:29310..29602 | Clytia hemisphaerica | exon |
| TCONS_00037003-exon-sc0001551-1510915933:29310..29602 | TCONS_00037003-exon-sc0001551-1510915933:29310..29602 | Clytia hemisphaerica | exon |
| TCONS_00037003-exon-sc0001551-1575043694:29310..29602 | TCONS_00037003-exon-sc0001551-1575043694:29310..29602 | Clytia hemisphaerica | exon |
| TCONS_00037003-exon-sc0001551-1491911889:30343..31406 | TCONS_00037003-exon-sc0001551-1491911889:30343..31406 | Clytia hemisphaerica | exon |
| TCONS_00037003-exon-sc0001551-1510915933:30343..31406 | TCONS_00037003-exon-sc0001551-1510915933:30343..31406 | Clytia hemisphaerica | exon |
| TCONS_00037003-exon-sc0001551-1575043694:30343..31406 | TCONS_00037003-exon-sc0001551-1575043694:30343..31406 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001551 | supercontig | sc0001551:29310..31406 + |
Blast
The following BLAST results are available for this feature:
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