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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036992 ID=TCONS_00036992|Name=TCONS_00036992|organism=Clytia hemisphaerica|type=transcript|length=1460bp
GAAAGTTCGGTGTCACCTGAATTGGTTAATAATAATGAAGTTTACGATGA
TGCAGCAAATGGAGAGCAAGTGGTTGATTTGATTGACCTTGTTGAAGACA
TTGAtGTGACAATTCGTCTGAGGAGATCCACATTGCCAGAAGATATGTTA
CAAGGATTTGCCAACGTAAACATAAGATCGAAAATCCAATTCAAACTTAT
CGATTGTACAGGCAAAGAAGAAACTGGAGAAGGTATTGGCGTTGTTCGTG
ATGCTTACACTTCATTCTGGAGAGAAATTTTGGACATAAGATTTTTAGGC
AACATGCAAAGAGTTCGTTGTTCATGACTACTTCGTCGAAGAATGGACAA
CTATTGGATTAATCTTAGTAAAAGGGTTTCTAGATTGTGGCTATTTTCCA
CTCACTCTATGCAAGGCTTTTGTGATCAATTGTTTGTTTGGTGACGAGAG
TTTGCCAGACAAAATGCTTTTAGATGCATTTTTGGAGTATATCAGCAAAA
CTGAAGAAAGGTTGGTATCGAGTGCTTTGACAGCGGGCCAAACATGAAAT
GTATTCGACGACGAATTTTTTCAGAACATTCTGGATGGTCCTGGATAGAT
ATCGATGCAGAACGAAGGTATCGTGCATGAATGTTTACGGGGTGTTTTTG
GAGCTAGCTAGGCAAGAGTTAGTGCAAAAACCCTATCTTATGGTATGTAC
ATGGAAAAACACTCTCACgccacttaaaaaaaaattgccagATGCCAAAG
CTGTAGAGGATCTTTATTCATCCATGGAGCCAACCAACATGAAGGTAGTG
AGACTGTTACAAAATGAACCTAAAAGTTTGGCTGAACGAGATGTGTTTTC
TTACTTGAAAGAATATGTAATGAATCTGGAAATGAACGccttgaaaaact
ttctttactTTACAACGGGAGCTGACGTAGTACTTgtctcaaaaattgaa
atttctttcaTCGCATTTGCAACCAGATCACAACGTAGACCCATTGCTCA
TACATGTGCTCCGTTATTGGAAATATCTGCCGCATATACTTCCTTCCCGG
ATTTGCGTGACGAATTTAATAGAGTTCTTGCTAGAACTGACTGGGGAATG
GATATGGCCTGAATAACTGAACTTTAAAACGATAGAgatcatttttaaaa
cttttttaatacTCTTGATGTTATTTGTCTTAGTTTTTACAGCACATCCG
TTTGAAAGTGtaactatttgaaaaaaagacatCTACCTTCGTGGTTTTGA
CATTTTGTTGATAGTAAATTTTAACCAATACTGGCCGTTTCAATTTGACT
TCTTATGTTTGTATTGGATGGTTTGTATCTTAACGATAGGTTATTTTTCC
TGTTGagatacattttttttattttgtgggaGTGCCTATTCAGTTAATCT
TAGGTTTAAGCTTAAAAGATTGTTTAATCCTTTGGTAATGTGAGATATCT
CAGAATATAg Run BLAST on NCBI protein sequence of TCONS_00036992-protein >TCONS_00036992-protein ID=TCONS_00036992-protein|Name=TCONS_00036992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MYSTTNFFRTFWMVLDRYRCRTKVSCMNVYGVFLELARQELVQKPYLMVC
TWKNTLTPLKKKLPDAKAVEDLYSSMEPTNMKVVRLLQNEPKSLAERDVF
SYLKEYVMNLEMNALKNFLYFTTGADVVLVSKIEISFIAFATRSQRRPIA
HTCAPLLEISAAYTSFPDLRDEFNRVLARTDWGMDMA Run BLAST on NCBI transcript from alignment at sc0001550:17912..21981- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036992 ID=TCONS_00036992|Name=TCONS_00036992|organism=Clytia hemisphaerica|type=transcript|length=4070bp|location=Sequence derived from alignment at sc0001550:17912..21981- (Clytia hemisphaerica)
GAAAGTTCGGTGTCACCTGAATTGGTTAATAATAATGAAGTTTACGGTAA
CTTGATATACATGGTTTTAATTATTATTAAAGTCTTCTTTTTTACCTTAC
TTAGCAGGGTGGCGCTAGAAAAGTTGAATTCTGAAGGAAAGTTTTTCAAA
ATATTTTGTAACATCAAAATTATGGATACGTTTCAAAAATGATATCAATT
CTAATGAAGCTGTTATTGTTATACCGCCGTTTTTTTTTATTCTAGGCCCA
ATCTTTGACGAAAGTTTGGTGTCACCTGAATTGGTTAATAATAATGAAGT
TTACGGTAACTTGATATACATGGTTTTGCCCTTACCTTTAAAATAAGCAC
TGATAAATGTCTTTTGAAAATAAGTAGGCANCCCCCCCTAAACCCTCGAA
AAAAATTTGGAACCCCCCCCCTAGAATCCTCTCCCCCCCTCTAGTAGATA
CTTTATGACCACTCCCTAATTTGATAAACTTCTTTTTACCTTCACTTAGT
TACTTAGGGTTAGCTTGAAAGAAGTCCACTTCTTGAGAAAGGTTTTTTCA
ATCGAATTTTTGGAAAATTTCAATATGTAAATACATAAAGTCAACAGGTC
TGGTCAGATAATTTTTCTTTTGTTAGCAGAGAGTGTAATTTAAATTGAGC
CTTCATTGTGCATGATGTCAGTTTTGTTTTATGTTATGGGTATGGTATGA
GTTAAGCCTTCGTGCATCTTTGGGGGAGGGGGCAAATAGGCCTCCCTAAA
CAAAAATTTGTGATAATTTTTGTAAGACTTGTCAAATTGACAATTCATAT
TATTTTGTTTTGCTCAAATTTTGTGTGGTAGCTCCATATAACATATAATT
TTGGGGCTGGGGGTCAATTTTTTGTCACTTAATGTATAGGTGTATTTTAC
AGACCGGCCTTTTTAGGCTAATTTTGGCCTAAATTTTCATATCTTAGGAT
TGAGAAATGGTAATGACTTGAAAATTAGAACATTGTGAGAATTCACTTAG
GTTAAAAGTATTTTACAATTGGGCCTACAAGTAACTTTAAAAATACTGAA
GTTGTGGTTAGCACATTCGACAGTTTAGCAATCAAGGTAAAATACTGACT
GGTCTGTAAAATACCAACCACGCAGGTGGCCGAACTAAAATTCTGCACAT
TGTCTTAGATCACTAAGACCTACAACTGGTGAAAATTTCGAGTCAAAAGC
TTCAGTAGTTTCTGAGTTCCGAAGGAGGTGTCTTTTACGGACCGGTCAGT
AAAGTACTAAATTATGATGGGACCAACTTTTTTCGTCACCTTTCACTTTT
TTTGAAAAAGTAGCCCTCAGGAGCAAATTTTAGCCCAAAATTACCATTTT
TACCTTACTTAGAGCAGGGTTGGCGCCTATTTTTCAAAACAGTTTTTCCA
AATATTTTGTAACATCAAAATTATGGATACGTTTCAAAAATGATATCAAT
TCTAGTGAAGCTGTTATTGTTATACCGCCGTTTTTTTTATTCTAGGCCCA
ATCGTTGACGAAAGTTCGATGTCACCTGAATTGGTTAATAATAATGAAGT
TTACGGTAACTTGATATACATGGTTTTGCCCTTACCTTTAAAATAAGCAC
TGATAAATGTCTTTTGAAAATAAGTAGGCAAAAATAGGGGGTGTTGTAAT
ATACTTCTTAAAAAGCCATATTCGTCCAGGAGCTTAAGTTCCAAGTCAGT
TTTCAATGGTTTCGATTCTTATCTTGCTATATACTATCGCCAGAGCTTTT
CTGTGTTCACTAACAGCTATAACGGCGCATGACGCTAGGCACCAGCTAGT
TTTCTATATACCTTACGTTTCAGGGGCAAGAATAAAGTTAATCATATCTT
CATTTAAAATTTGCATTTTAACAGATAATTTTCCTTTACAGATGATGCAG
CAAATGGAGAGCAAGTGGTTGATTTGATTGACCTTGTTGAAGACATTGAG
TAAGTTTGTTTTATGATTTTTTCAACTTAAGTTTAGTGGAGCTAGAATCT
GAACTTTTCTGACTGTCTATCGATCTGGCAAGAAAACTATTTTCCTCCCC
CTTTGCTTGCCGAAGGAGCTGTTTTATAAAAATTTTCCGAAATAGTAAAA
AGAAAAGGCATCTTTCTCACCAAATTTATTTGCAACTAATAAGCTAATAG
TATACAGTTAGTGCAGGCTCGTGTATCAAAAAAGCTTCTCGTGTGCACAG
ATTTGTTACAAGCAAACTAACTTTTGATCTGATGCCCTGACCCCTCAAGG
ATCAAGAAAATCTTGGGTTACAAAATTCTAACAACCCTGTTGCCATGGAA
AATGACGTCATTGGTTACCATAGCAACAAAAAATTAAAGTTGAGCGAAAA
TTTTTTGAATTTTGACAATTTTTCATTTTTCGATGACGTCATCATTTATG
ACGTCATAATGCTTTATTTCCTTAATATATGAGAGATATATGCATTTTCA
GAGATATAAGTTGTGACCTTTTTCTTTACCAGTTTTTCATGCTCTTTCGA
ATGGACCAAAAATTTTTTGAATTTGACGACTTTAATTTTTTTTTGTCTTT
TTATCCCCTCGTTTATTTTGACCCATCCGTTTATCAGGTNAATTTGACGA
CTTTAATTTTTTTTTGTCTTTTTATCCCCTCGTTTATTTTGACCCCTCCG
TTTATCAGGTACTCACGTTTTGTTTTATTTAACAATCTTAAAGAAAATAT
TTCATTGCTTTTAGTGTGACAATTCGTCTGAGGAGATCCACATTGCCAGA
AGATATGTTACAAGGATTTGCCAACGTAAACATAAGATCGAAAATCCAAT
TCAAACTTATCGATTGTACAGGCAAAGAAGAAACTGGAGAAGGTATTGGC
GTTGTTCGTGATGCTTACACTTCATTCTGGAGAGAAATTTTGGACATAAG
ATTTTTAGGCAACATGCAAAGAGTTCGTTGTTCATGACTACTTCGTCGAA
GAATGGACAACTATTGGATTAATCTTAGTAAAAGGGTTTCTAGATTGTGG
CTATTTTCCACTCACTCTATGCAAGGCTTTTGTGATCAATTGTTTGTTTG
GTGACGAGAGTTTGCCAGACAAAATGCTTTTAGATGCATTTTTGGAGTAT
ATCAGCAAAACTGAAGAAAGGTTGGTATCGAGTGCTTTGACAGCGGGCCA
AACATGAAATGTATTCGACGACGAATTTTTTCAGAACATTCTGGATGGTC
CTGGATAGATATCGATGCAGAACGAAGGTATCGTGCATGAATGTTTACGG
GGTGTTTTTGGAGCTAGCTAGGCAAGAGTTAGTGCAAAAACCCTATCTTA
TGGTATGTACATGGAAAAACACTCTCACGCCACTTAAAAAAAAATTGCCA
GATGCCAAAGCTGTAGAGGATCTTTATTCATCCATGGAGCCAACCAACAT
GAAGGTAGTGAGACTGTTACAAAATGAACCTAAAAGTTTGGCTGAACGAG
ATGTGTTTTCTTACTTGAAAGAATATGTAATGAATCTGGAAATGAACGCC
TTGAAAAACTTTCTTTACTTTACAACGGGAGCTGACGTAGTACTTGTCTC
AAAAATTGAAATTTCTTTCATCGCATTTGCAACCAGATCACAACGTAGAC
CCATTGCTCATACATGTGCTCCGTTATTGGAAATATCTGCCGCATATACT
TCCTTCCCGGATTTGCGTGACGAATTTAATAGAGTTCTTGCTAGAACTGA
CTGGGGAATGGATATGGCCTGAATAACTGAACTTTAAAACGATAGAGATC
ATTTTTAAAACTTTTTTAATACTCTTGATGTTATTTGTCTTAGTTTTTAC
AGCACATCCGTTTGAAAGTGTAACTATTTGAAAAAAAGACATCTACCTTC
GTGGTTTTGACATTTTGTTGATAGTAAATTTTAACCAATACTGGCCGTTT
CAATTTGACTTCTTATGTTTGTATTGGATGGTTTGTATCTTAACGATAGG
TTATTTTTCCTGTTGAGATACATTTTTTTTATTTTGTGGGAGTGCCTATT
CAGTTAATCTTAGGTTTAAGCTTAAAAGATTGTTTAATCCTTTGGTAATG
TGAGATATCTCAGAATATAG Coding sequence (CDS) from alignment at sc0001550:17912..21981- >TCONS_00036992 ID=TCONS_00036992|Name=TCONS_00036992|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0001550:17912..21981- (Clytia hemisphaerica)
ATGTATTCGACGACGAATTTTTTCAGAACATTCTGGATGGTCCTGGATAG
ATATCGATGCAGAACGAAGGTATCGTGCATGAATGTTTACGGGGTGTTTT
TGGAGCTAGCTAGGCAAGAGTTAGTGCAAAAACCCTATCTTATGGTATGT
ACATGGAAAAACACTCTCACGCCACTTAAAAAAAAATTGCCAGATGCCAA
AGCTGTAGAGGATCTTTATTCATCCATGGAGCCAACCAACATGAAGGTAG
TGAGACTGTTACAAAATGAACCTAAAAGTTTGGCTGAACGAGATGTGTTT
TCTTACTTGAAAGAATATGTAATGAATCTGGAAATGAACGCCTTGAAAAA
CTTTCTTTACTTTACAACGGGAGCTGACGTAGTACTTGTCTCAAAAATTG
AAATTTCTTTCATCGCATTTGCAACCAGATCACAACGTAGACCCATTGCT
CATACATGTGCTCCGTTATTGGAAATATCTGCCGCATATACTTCCTTCCC
GGATTTGCGTGACGAATTTAATAGAGTTCTTGCTAGAACTGACTGGGGAA
TGGATATGGCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036992-exon-sc0001550-1575043694:21936..21981 | TCONS_00036992-exon-sc0001550-1575043694:21936..21981 | Clytia hemisphaerica | exon |
| TCONS_00036992-exon-sc0001550-1575043694:20033..20090 | TCONS_00036992-exon-sc0001550-1575043694:20033..20090 | Clytia hemisphaerica | exon |
| TCONS_00036992-exon-sc0001550-1575043694:17912..19267 | TCONS_00036992-exon-sc0001550-1575043694:17912..19267 | Clytia hemisphaerica | exon |
| TCONS_00036992-exon-sc0001550-1510915933:21936..21981 | TCONS_00036992-exon-sc0001550-1510915933:21936..21981 | Clytia hemisphaerica | exon |
| TCONS_00036992-exon-sc0001550-1510915933:20033..20090 | TCONS_00036992-exon-sc0001550-1510915933:20033..20090 | Clytia hemisphaerica | exon |
| TCONS_00036992-exon-sc0001550-1510915933:17912..19267 | TCONS_00036992-exon-sc0001550-1510915933:17912..19267 | Clytia hemisphaerica | exon |
| TCONS_00036992-exon-sc0001550-1491911889:21936..21981 | TCONS_00036992-exon-sc0001550-1491911889:21936..21981 | Clytia hemisphaerica | exon |
| TCONS_00036992-exon-sc0001550-1491911889:20033..20090 | TCONS_00036992-exon-sc0001550-1491911889:20033..20090 | Clytia hemisphaerica | exon |
| TCONS_00036992-exon-sc0001550-1491911889:17912..19267 | TCONS_00036992-exon-sc0001550-1491911889:17912..19267 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001550 | supercontig | sc0001550:17912..21981 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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