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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036982 ID=TCONS_00036982|Name=TCONS_00036982|organism=Clytia hemisphaerica|type=transcript|length=2983bp
ccgggggtaaaaagttgaaattttcctatttctccgacccttagtgggac
tgaaattagattttctgatttctcCGACCTTAAGCGGTACTTTGGAAATC
CCAAAAagatacccttaagggcggcacataccgtaccctccatttggcTA
AGTACCCCCTCGCCCGGGTCTAAAACCATGCaacggttaaaaatatccag
tCTAGCTCAATAAGAATCGattctttctgtaattcgaacaaattagactt
CCCGCTCGATTTCAAGCGCGTCGAATAAGCTTGCAAGACTTAAATATCat
atattataatattattCTCTTGTTAATGGCGTAGTTATACAACATCTATC
CCGTCATTTTGCGAACGTTGTCGCCACCTGGGGTATGCCCCTGTCGACGA
AGGTTCATAATAATATTCATAACATTACagtcaaatttgaaaaagatttt
catttaataaatgTACATGAATTAAAGTTTCATGCGTTTGCACTTGTTCa
aatgtattttcaaattttactttgCTCTGGTATCTTGTTTATTTATCATC
GAGCACTATTCAGTATGATTTCATTGCAATGATTTAACATTAGAGTCTGA
CATTGTTAAAGCTTACAGATTGTGTCAATTGTCTTAACTTAACAGTAAcc
cagattgaaataaaaaatctaagtAACGTCAAAAAAGCATACTATCCATT
TATGATATCGAAGCTGCGTTGGAGGATCTTGTCGACGAAGTTccacaaaa
atattcacaataCTGTTGTTTATAATCACATTATTGTTCAGTCAGCTTTA
TTGAAAACCGAATAAAAGGCGCGAGCGTCTGACGTGACACCAAAAACACC
ACTAAAAAGAGCAAAACAGATGATCAGGCTATTTGCTACCACTTCAGTAT
TACTCATAACATTCCACCTGATTTTGATGCAGAATAAACAAGGATAGAGC
AAAACCAGGATCGTCCCTGTGGTATTTCCGACAAAAGACATCAGTAAGCT
GAAATGTGGTACAGCCGCCGCGATGGTTATAAACAGCATGACGATACATA
AGCGGAAAAGGAGATTCGATGTCAGGTATTTGGCATATTTGGTTTCGGTA
TCTAAAACTTTGTCGAACCCTCTCGGCAACAGAATCTGGTTTTCCAGAAT
ATCGAAGACAGCGAACATTGGTACAGTGTAGAATGATAGGGAAAGTATAA
TGGCGGATATGTTGATCAGATAACCAAATAAGTTATACGGTAAGTTCAAA
GTCATTATCTGTTCTGTATGGAAAGTGAAAGCCAGGAAAACAATAATTCC
AATCACGCATTTGAAGATGGTCACTACTGTATAGGAGAAATCCATTAGCA
GGTCGAACGATTCTGGTTCACNCGCATTTGAAGATGGTCACTACTGTATA
GGAGAAATCCATTAGCGGGTCGAACGATTCTGGTTCACGCATGCACCGTT
CGATAGATGGTAAATAGGCCTGGGACGAGTATGTTACCATGACAATACCG
AATGATATAGGAGTGATGTTAGGATTGAAGCTTGGCATTATTTCACTATC
CCAGCTCGGACGATTCATTAGACTGTATCCCAAAACGAACAGGCTAATCA
CAGTCGCGATGCAAACAGAAACAATACACGTCCAAGTAACTTGGTGCATT
TTACGGACCAGAATGGTCGGTATAATGATCAAGGATAAGAGGAAGATCCA
CGTTGATTCGCTCATTCCTGATTTAGGAAAGGTGTGAGCAATAACTGTTC
CTGGCATGATGAGCAACAAAACACAATGTGAAAACTGTTCAATACAATTT
ACTATGTGGACCAGCAGGCGTCCGAAACGCGGGCTGAACTCCTCACCAAT
GTCTGCGTAACTATCGCGGACGCGAACACGCTGCCCGTCGGCGGTTTCCT
CATACAGTAGATTGATCAACATTTTACCGGTGTAGTTACCCAGAATCCCC
ACAACGATGGTGATTAAGATTCCCCAATATCCTCCAAGCCGGATGACAAA
CGGCATTGCTAAAATACCGGTACCGAGATTAGCATTAATCAAGTTGAATA
TAGATTGGATGAGATTGGTTTTGCCATCATCCGTATCATCCACTATCCGG
CACTTCTTGGCAAGCGATTTAGCTCCGGTCTTCAACCAAATGGTCGCATT
GTTTAGTGATTTGCTATTGAAGAAGGTCGCAGACTCTGGTGATGATGGTG
GTTTGTGATCACTGGAGGTTGAGATTGTATCAGATTGACCAGGGATATTT
GGACCTTCATAATCATCCTCTTGATCATTGATGAGAATCTTATGCGGTTG
CATTTTGCCAATATCTTTTTTGGTGGTCTTTAGGATCGTTCTTAAGAATT
GAAAACTATTAAAGCAAATTCGTATACCGTATTGTAGATTCTGGCGAATA
TCTTTTCTTATACCACTCCTCGTTAGAAATCAATGTTTCTCTCTTGGTCA
AACTGAACGTAGAAATACGCCTCCACTCAAACTAAGGGAAGTTTTCATCC
AAAAGAAATCCACAGCCAGTTTTCAAGTTAAAACAATTAGCAATTGTAAT
ATGATCTTGAACATAAAAAATAGGTATGAAACAATATTAATCTTTGCAAA
AGTCAAAGTCTATCAAATTTCCCAAGTCAGTGTAGCTCCTCCACTTCCAG
TGCTGTTTGTCAATAAAGTTCTGATATGGTGAAATTTGCATGAATGATAA
ATTAAAATATCTAAATCTCTGGTGACTCCAGTTGTGGAAAATAAGCTCCT
TTCTGTGATAGCATTGACATATAGTTCGTCAGCCGAAGCCAGTTCTTGGA
ATCTTTTCTTTCGATAACCTCTCTGCTCTTTGGTGACCTCCTGGTCAAAA
TGTCTAGTCCTTGAATTATTATAGTAAAGAGTTATACTGAATCAATGTCT
CcagttttattcttttttctttgactATTTAACGCCCTGAAGAATTTAAA
TACATCTATATAAAAgaatagaaatgaaatttt Run BLAST on NCBI protein sequence of TCONS_00036982-protein >TCONS_00036982-protein ID=TCONS_00036982-protein|Name=TCONS_00036982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MQPHKILINDQEDDYEGPNIPGQSDTISTSSDHKPPSSPESATFFNSKSL
NNATIWLKTGAKSLAKKCRIVDDTDDGKTNLIQSIFNLINANLGTGILAM
PFVIRLGGYWGILITIVVGILGNYTGKMLINLLYEETADGQRVRVRDSYA
DIGEEFSPRFGRLLVHIVNCIEQFSHCVLLLIMPGTVIAHTFPKSGMSES
TWIFLLSLIIIPTILVRKMHQVTWTCIVSVCIATVISLFVLGYSLMNRPS
WDSEIMPSFNPNITPISFGIVMVTYSSQAYLPSIERCMREPESFDPLMDF
SYTVVTIFKCX Run BLAST on NCBI transcript from alignment at sc0001546:41945..44927 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036982 ID=TCONS_00036982|Name=TCONS_00036982|organism=Clytia hemisphaerica|type=transcript|length=2983bp|location=Sequence derived from alignment at sc0001546:41945..44927 (Clytia hemisphaerica)
aaaatttcatttctattcTTTTATATAGATGTATTTAAATTCTTCAGGGC
GTTAAATagtcaaagaaaaaagaataaaactgGAGACATTGATTCAGTAT
AACTCTTTACTATAATAATTCAAGGACTAGACATTTTGACCAGGAGGTCA
CCAAAGAGCAGAGAGGTTATCGAAAGAAAAGATTCCAAGAACTGGCTTCG
GCTGACGAACTATATGTCAATGCTATCACAGAAAGGAGCTTATTTTCCAC
AACTGGAGTCACCAGAGATTTAGATATTTTAATTTATCATTCATGCAAAT
TTCACCATATCAGAACTTTATTGACAAACAGCACTGGAAGTGGAGGAGCT
ACACTGACTTGGGAAATTTGATAGACTTTGACTTTTGCAAAGATTAATAT
TGTTTCATACCTATTTTTTATGTTCAAGATCATATTACAATTGCTAATTG
TTTTAACTTGAAAACTGGCTGTGGATTTCTTTTGGATGAAAACTTCCCTT
AGTTTGAGTGGAGGCGTATTTCTACGTTCAGTTTGACCAAGAGAGAAACA
TTGATTTCTAACGAGGAGTGGTATAAGAAAAGATATTCGCCAGAATCTAC
AATACGGTATACGAATTTGCTTTAATAGTTTTCAATTCTTAAGAACGATC
CTAAAGACCACCAAAAAAGATATTGGCAAAATGCAACCGCATAAGATTCT
CATCAATGATCAAGAGGATGATTATGAAGGTCCAAATATCCCTGGTCAAT
CTGATACAATCTCAACCTCCAGTGATCACAAACCACCATCATCACCAGAG
TCTGCGACCTTCTTCAATAGCAAATCACTAAACAATGCGACCATTTGGTT
GAAGACCGGAGCTAAATCGCTTGCCAAGAAGTGCCGGATAGTGGATGATA
CGGATGATGGCAAAACCAATCTCATCCAATCTATATTCAACTTGATTAAT
GCTAATCTCGGTACCGGTATTTTAGCAATGCCGTTTGTCATCCGGCTTGG
AGGATATTGGGGAATCTTAATCACCATCGTTGTGGGGATTCTGGGTAACT
ACACCGGTAAAATGTTGATCAATCTACTGTATGAGGAAACCGCCGACGGG
CAGCGTGTTCGCGTCCGCGATAGTTACGCAGACATTGGTGAGGAGTTCAG
CCCGCGTTTCGGACGCCTGCTGGTCCACATAGTAAATTGTATTGAACAGT
TTTCACATTGTGTTTTGTTGCTCATCATGCCAGGAACAGTTATTGCTCAC
ACCTTTCCTAAATCAGGAATGAGCGAATCAACGTGGATCTTCCTCTTATC
CTTGATCATTATACCGACCATTCTGGTCCGTAAAATGCACCAAGTTACTT
GGACGTGTATTGTTTCTGTTTGCATCGCGACTGTGATTAGCCTGTTCGTT
TTGGGATACAGTCTAATGAATCGTCCGAGCTGGGATAGTGAAATAATGCC
AAGCTTCAATCCTAACATCACTCCTATATCATTCGGTATTGTCATGGTAA
CATACTCGTCCCAGGCCTATTTACCATCTATCGAACGGTGCATGCGTGAA
CCAGAATCGTTCGACCCGCTAATGGATTTCTCCTATACAGTAGTGACCAT
CTTCAAATGCGNGTGAACCAGAATCGTTCGACCTGCTAATGGATTTCTCC
TATACAGTAGTGACCATCTTCAAATGCGTGATTGGAATTATTGTTTTCCT
GGCTTTCACTTTCCATACAGAACAGATAATGACTTTGAACTTACCGTATA
ACTTATTTGGTTATCTGATCAACATATCCGCCATTATACTTTCCCTATCA
TTCTACACTGTACCAATGTTCGCTGTCTTCGATATTCTGGAAAACCAGAT
TCTGTTGCCGAGAGGGTTCGACAAAGTTTTAGATACCGAAACCAAATATG
CCAAATACCTGACATCGAATCTCCTTTTCCGCTTATGTATCGTCATGCTG
TTTATAACCATCGCGGCGGCTGTACCACATTTCAGCTTACTGATGTCTTT
TGTCGGAAATACCACAGGGACGATCCTGGTTTTGCTCTATCCTTGTTTAT
TCTGCATCAAAATCAGGTGGAATGTTATGAGTAATACTGAAGTGGTAGCA
AATAGCCTGATCATCTGTTTTGCTCTTTTTAGTGGTGTTTTTGGTGTCAC
GTCAGACGCTCGCGCCTTTTATTCGGTTTTCAATAAAGCTGACTGAACAA
TAATGTGATTATAAACAACAGtattgtgaatatttttgtggAACTTCGTC
GACAAGATCCTCCAACGCAGCTTCGATATCATAAATGGATAGTATGCTTT
TTTGACGTTacttagattttttatttcaatctgggTTACTGTTAAGTTAA
GACAATTGACACAATCTGTAAGCTTTAACAATGTCAGACTCTAATGTTAA
ATCATTGCAATGAAATCATACTGAATAGTGCTCGATGATAAATAAACAAG
ATACCAGAGcaaagtaaaatttgaaaatacatttGAACAAGTGCAAACGC
ATGAAACTTTAATTCATGTAcatttattaaatgaaaatctttttcaaatt
tgactGTAATGTTATGAATATTATTATGAACCTTCGTCGACAGGGGCATA
CCCCAGGTGGCGACAACGTTCGCAAAATGACGGGATAGATGTTGTATAAC
TACGCCATTAACAAGAGaataatattataatatatGATATTTAAGTCTTG
CAAGCTTATTCGACGCGCTTGAAATCGAGCGGGaagtctaatttgttcga
attacagaaagaatCGATTCTTATTGAGCTAGactggatatttttaaccg
ttGCATGGTTTTAGACCCGGGCGAGGGGGTACTTAgccaaatggagggta
cggtatgtgccgcccttaagggtatctTTTTGGGATTTCCAAAGTACCGC
TTAAGGTCGgagaaatcagaaaatctaatttcagtcccactaagggtcgg
agaaataggaaaatttcaactttttacccccgg Coding sequence (CDS) from alignment at sc0001546:41945..44927 >TCONS_00036982 ID=TCONS_00036982|Name=TCONS_00036982|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0001546:41945..44927 (Clytia hemisphaerica)
ATGCAACCGCATAAGATTCTCATCAATGATCAAGAGGATGATTATGAAGG
TCCAAATATCCCTGGTCAATCTGATACAATCTCAACCTCCAGTGATCACA
AACCACCATCATCACCAGAGTCTGCGACCTTCTTCAATAGCAAATCACTA
AACAATGCGACCATTTGGTTGAAGACCGGAGCTAAATCGCTTGCCAAGAA
GTGCCGGATAGTGGATGATACGGATGATGGCAAAACCAATCTCATCCAAT
CTATATTCAACTTGATTAATGCTAATCTCGGTACCGGTATTTTAGCAATG
CCGTTTGTCATCCGGCTTGGAGGATATTGGGGAATCTTAATCACCATCGT
TGTGGGGATTCTGGGTAACTACACCGGTAAAATGTTGATCAATCTACTGT
ATGAGGAAACCGCCGACGGGCAGCGTGTTCGCGTCCGCGATAGTTACGCA
GACATTGGTGAGGAGTTCAGCCCGCGTTTCGGACGCCTGCTGGTCCACAT
AGTAAATTGTATTGAACAGTTTTCACATTGTGTTTTGTTGCTCATCATGC
CAGGAACAGTTATTGCTCACACCTTTCCTAAATCAGGAATGAGCGAATCA
ACGTGGATCTTCCTCTTATCCTTGATCATTATACCGACCATTCTGGTCCG
TAAAATGCACCAAGTTACTTGGACGTGTATTGTTTCTGTTTGCATCGCGA
CTGTGATTAGCCTGTTCGTTTTGGGATACAGTCTAATGAATCGTCCGAGC
TGGGATAGTGAAATAATGCCAAGCTTCAATCCTAACATCACTCCTATATC
ATTCGGTATTGTCATGGTAACATACTCGTCCCAGGCCTATTTACCATCTA
TCGAACGGTGCATGCGTGAACCAGAATCGTTCGACCCGCTAATGGATTTC
TCCTATACAGTAGTGACCATCTTCAAATGCGNGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036982-exon-sc0001546-1491911889:41945..44927 | TCONS_00036982-exon-sc0001546-1491911889:41945..44927 | Clytia hemisphaerica | exon |
| TCONS_00036982-exon-sc0001546-1510915933:41945..44927 | TCONS_00036982-exon-sc0001546-1510915933:41945..44927 | Clytia hemisphaerica | exon |
| TCONS_00036982-exon-sc0001546-1575043694:41945..44927 | TCONS_00036982-exon-sc0001546-1575043694:41945..44927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001546 | supercontig | sc0001546:41945..44927 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013057 | AA_transpt_TM |
Blast
BLAST of TCONS_00036982 vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 2.057e-30 Identity = 74/240 (30.83%), Postives = 133/240 (55.42%), Query Frame = -3
Query: 1377 DDGKTNLIQSIFNLINANLGTGILAMPFVIRLGGYWXXXXXXXXXXXGNYTGKMLINLLYEETADGQRVRVRDSYADIGEEF-SPRF---GRLLVHIVNCIEQFSHCVLLLIMPGTVIAHTFPKSGMSESTWIFLLSLIIIPTILVRKMHQVTWTCIVSVCIATVISLFVLGYSLMNRPSWDSEIMPSF-NPNITPISFGIVMVTYSSQAYLPSIERCMREPESFDPLMDFSYTVVTIFK 2081
D K ++ +N+ NA G +L +P+ I GGY G+ + I ++ YTGK+LI LYEE DG+ VRVRDSY I +PRF G +V++ IE C+L +++ G ++ ++FP +S+ +W + + +++P ++ + V+ ++ VI++ V+ Y L W E + + + PIS GI++ +Y+SQ +LPS+E M++P F +M++++ + K
Sbjct: 112 DKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGEVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLK 351
The following BLAST results are available for this feature:
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