TCONS_00036971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036971
Unique NameTCONS_00036971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036971 ID=TCONS_00036971|Name=TCONS_00036971|organism=Clytia hemisphaerica|type=transcript|length=1507bp
aaaaaaacaaagaaacatttCACAAATGATGGTGGACAATAGTGGAAAAG
GGTTCACAGTCATTGCAACTGACAGGTTAAAGACATCGCCGAACGGTAAA
AAGAATGACAATAAAGGAGCTTTCAAATGCACCATAAAAACCATGATGCA
ATTATTTAACCATAGAAAACAAGTCAAGAAACGAATACAACGTGTCACGC
TCTCTGTCatcgtgttaggcacacgtaaCGTCGGCAAGACGTCCCTAATA
CGTGCTCTGTGTGGTGAAGAATTTACAAGCGATGCTTCACCAACAGTCCT
TGACGTTTATACCAAAGAAAACATGATCAATAATATGTTGGTCAAATTCG
AATTTATAGACTTGTCAGCTTCTCATAGTTTTCCTGCTATGAGGAAATTA
TACATACAGAAAGCCAACATCTTTTTCTTACTTTATGATAATACGAGAGA
TAGTTTTAAAGAGATGGTACGCCTGAAAGATGAGATTGAAGAAATACATA
ACGTACATTTATCAGAACTTCCTATAGCTGTTATTAAAACCAAATGTGAT
TCAACGCGATCCAGGACGTTACCAGAGATGGAAGTAGATGATATTTCGCA
TTGGTGTGgaactttgtttgcttgttctGCCAAGAAAGGGGTGAATATAG
CAGAGATTGAAGAATATTTATTATGCGAGGGTTGTTTTGCTGAtaccaaa
aaaacaacaacgacTTTCGAAAGGAATTCTGGACATCGTGTTAGTGGGCG
GTATATCTATGGCGGACGAAGGCGGTCTAAAAGTGTTATATTAAATCGGA
CTCCTGAACGACCTCGAAGTTCTTGCAGTAACTCGTCTGTACAAAGTTGA
taccattttattttgtttgtcttAACTTATTAGAGGGATTTTATTTGGAT
TGCGTAATTTTCAAGCTTTCAAAGTGGTTTTAAATTTTACGTGGTTGCTG
TTTAAGACGTGGCATAAAACAATacaaaatacagttgacgctctctaatt
cgattttcaaggggaatttcattttcatcgaataaagaAGCATATCGAAA
AGATGAGCAtcttttatgagagttttttgtCGATGGcgattttcaatatt
atcgaataatagagcgtatCGACTATTAGaaggtcgaattagagaacgtT
AACTTTGTAGTGCATGTATATTTTGAACTGTTTAACATAGCTTTGCAATT
AAAAATCTGGATGGAGATAGATAATTGCAACAATGTTCACGGCATGCCAC
TAATGAGATGACGTCATTAACATCATCGTTTATTAGTTATCCATAATGAC
GTAATACGTCTCAAATTATCAATTAAACGCAACGGGATCTTTAAGGTACA
cggttttataagaacaaacatagggcttccatggccaaaatatcaagaac
aagttaagaacaatttaaggcctTGTGGACTCTTAAACACCCGTTtactt
aggaaaatggacaatgatgttcacaaaatggtgtataagaacatgttagg
aaCATTG
Run BLAST on NCBI

protein sequence of TCONS_00036971-protein

>TCONS_00036971-protein ID=TCONS_00036971-protein|Name=TCONS_00036971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
KKQRNISQMMVDNSGKGFTVIATDRLKTSPNGKKNDNKGAFKCTIKTMMQ
LFNHRKQVKKRIQRVTLSVIVLGTRNVGKTSLIRALCGEEFTSDASPTVL
DVYTKENMINNMLVKFEFIDLSASHSFPAMRKLYIQKANIFFLLYDNTRD
SFKEMVRLKDEIEEIHNVHLSELPIAVIKTKCDSTRSRTLPEMEVDDISH
WCGTLFACSAKKGVNIAEIEEYLLCEGCFADTKKTTTTFERNSGHRVSGR
YIYGGRRRSKSVILNRTPERPRSSCSNSSVQS
Run BLAST on NCBI

transcript from alignment at sc0001544:18958..20464

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036971 ID=TCONS_00036971|Name=TCONS_00036971|organism=Clytia hemisphaerica|type=transcript|length=1507bp|location=Sequence derived from alignment at sc0001544:18958..20464 (Clytia hemisphaerica)
CAATGttcctaacatgttcttatacaccattttgtgaacatcattgtcca
ttttcctaagtaAACGGGTGTTTAAGAGTCCACAaggccttaaattgttc
ttaacttgttcttgatattttggccatggaagccctatgtttgttcttat
aaaaccgTGTACCTTAAAGATCCCGTTGCGTTTAATTGATAATTTGAGAC
GTATTACGTCATTATGGATAACTAATAAACGATGATGTTAATGACGTCAT
CTCATTAGTGGCATGCCGTGAACATTGTTGCAATTATCTATCTCCATCCA
GATTTTTAATTGCAAAGCTATGTTAAACAGTTCAAAATATACATGCACTA
CAAAGTTAacgttctctaattcgaccttCTAATAGTCGatacgctctatt
attcgataatattgaaaatcgCCATCGacaaaaaactctcataaaagaTG
CTCATCTTTTCGATATGCTtctttattcgatgaaaatgaaattccccttg
aaaatcgaattagagagcgtcaactgtattttgtATTGTTTTATGCCACG
TCTTAAACAGCAACCACGTAAAATTTAAAACCACTTTGAAAGCTTGAAAA
TTACGCAATCCAAATAAAATCCCTCTAATAAGTTaagacaaacaaaataa
aatggtaTCAACTTTGTACAGACGAGTTACTGCAAGAACTTCGAGGTCGT
TCAGGAGTCCGATTTAATATAACACTTTTAGACCGCCTTCGTCCGCCATA
GATATACCGCCCACTAACACGATGTCCAGAATTCCTTTCGAAAgtcgttg
ttgtttttttggtaTCAGCAAAACAACCCTCGCATAATAAATATTCTTCA
ATCTCTGCTATATTCACCCCTTTCTTGGCagaacaagcaaacaaagttcC
ACACCAATGCGAAATATCATCTACTTCCATCTCTGGTAACGTCCTGGATC
GCGTTGAATCACATTTGGTTTTAATAACAGCTATAGGAAGTTCTGATAAA
TGTACGTTATGTATTTCTTCAATCTCATCTTTCAGGCGTACCATCTCTTT
AAAACTATCTCTCGTATTATCATAAAGTAAGAAAAAGATGTTGGCTTTCT
GTATGTATAATTTCCTCATAGCAGGAAAACTATGAGAAGCTGACAAGTCT
ATAAATTCGAATTTGACCAACATATTATTGATCATGTTTTCTTTGGTATA
AACGTCAAGGACTGTTGGTGAAGCATCGCTTGTAAATTCTTCACCACACA
GAGCACGTATTAGGGACGTCTTGCCGACGttacgtgtgcctaacacgatG
ACAGAGAGCGTGACACGTTGTATTCGTTTCTTGACTTGTTTTCTATGGTT
AAATAATTGCATCATGGTTTTTATGGTGCATTTGAAAGCTCCTTTATTGT
CATTCTTTTTACCGTTCGGCGATGTCTTTAACCTGTCAGTTGCAATGACT
GTGAACCCTTTTCCACTATTGTCCACCATCATTTGTGaaatgtttctttg
ttttttt

Coding sequence (CDS) from alignment at sc0001544:18958..20464

>TCONS_00036971 ID=TCONS_00036971|Name=TCONS_00036971|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at sc0001544:18958..20464 (Clytia hemisphaerica)
TCAACTTTGTACAGACGAGTTACTGCAAGAACTTCGAGGTCGTTCAGGAG
TCCGATTTAATATAACACTTTTAGACCGCCTTCGTCCGCCATAGATATAC
CGCCCACTAACACGATGTCCAGAATTCCTTTCGAAAgtcgttgttgtttt
tttggtaTCAGCAAAACAACCCTCGCATAATAAATATTCTTCAATCTCTG
CTATATTCACCCCTTTCTTGGCagaacaagcaaacaaagttcCACACCAA
TGCGAAATATCATCTACTTCCATCTCTGGTAACGTCCTGGATCGCGTTGA
ATCACATTTGGTTTTAATAACAGCTATAGGAAGTTCTGATAAATGTACGT
TATGTATTTCTTCAATCTCATCTTTCAGGCGTACCATCTCTTTAAAACTA
TCTCTCGTATTATCATAAAGTAAGAAAAAGATGTTGGCTTTCTGTATGTA
TAATTTCCTCATAGCAGGAAAACTATGAGAAGCTGACAAGTCTATAAATT
CGAATTTGACCAACATATTATTGATCATGTTTTCTTTGGTATAAACGTCA
AGGACTGTTGGTGAAGCATCGCTTGTAAATTCTTCACCACACAGAGCACG
TATTAGGGACGTCTTGCCGACGttacgtgtgcctaacacgatGACAGAGA
GCGTGACACGTTGTATTCGTTTCTTGACTTGTTTTCTATGGTTAAATAAT
TGCATCATGGTTTTTATGGTGCATTTGAAAGCTCCTTTATTGTCATTCTT
TTTACCGTTCGGCGATGTCTTTAACCTGTCAGTTGCAATGACTGTGAACC
CTTTTCCACTATTGTCCACCATCATTTGTGaaatgtttctttgtttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021840XLOC_021840Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036971-proteinTCONS_00036971-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036971-exon-sc0001544-1491911889:18958..20464TCONS_00036971-exon-sc0001544-1491911889:18958..20464Clytia hemisphaericaexon
TCONS_00036971-exon-sc0001544-1510915933:18958..20464TCONS_00036971-exon-sc0001544-1510915933:18958..20464Clytia hemisphaericaexon
TCONS_00036971-exon-sc0001544-1575043694:18958..20464TCONS_00036971-exon-sc0001544-1575043694:18958..20464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001544supercontigsc0001544:18958..20464 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.27479	0.243451	0.319877	0.353013	1.65868	1.36941	4.66194	5.60864	2.05693	2.51766	3.25353	3.08933	1.56622	0.68221	0.819778	1.2709	3.09939	5.08236	0.654803	0.70134	1.27271	1.3587	1.19088	1.6403	2.06053	1.20476	15.8	10.6114	3.73801	3.43045
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00036971 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.909e-17
Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 2 
Query:  206 VIVLGTRNVGKTSLIRALCGEEFTSDASPTVLDVYTKENMINNMLVKFEFIDLSASHSFPAMRKLYIQKANIFFLLYDNT-RDSFKEMVRLKDEIEEIHNVHLSELPIAVIKTKCDSTRSRTLPEMEVDDISH-WCGTLFACSAKKGVNIAEIEEYLL 673
            V V G   VGK+SL+       F     PTV D Y +    +  +   +  D + SH FPAM++L I K + F L+Y  T R S +E+  + ++I EI    +  +PI ++  KCD + SR +   E + ++  W       SAK   N+ E+ + LL
Sbjct:   10 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 166
The following BLAST results are available for this feature:
BLAST of TCONS_00036971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIRA25.909e-1731.65GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIR... [more]
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