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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036957 ID=TCONS_00036957|Name=TCONS_00036957|organism=Clytia hemisphaerica|type=transcript|length=635bp
AATAACTAATAATCTTCTCTTAGCttctaagaaaaaaaagatttgaaaaa
cacGTACGATAGCCATTGATACAAAAGTAATATGAGTGGTGTAGTTGATG
ATTGGTTAAGTAATGAACAATTTGATTTCGATGTCACTACTTCACCTGTA
GGAGACAATGTGCTTTGCATTGTCAATCAATCGAAACAAACTACCGATGC
CGACGCGTGTTTGAATGACGGCGACGTNCAAAGACAGCAATATAACTATT
GCAATCACCCagaaataaaaacgaaaacttCCTCAATTCCTATCTCCTTA
GCAATGTGCTTTGCATTGTCAATCAATCGAAACAAACTACTGATGCCGAC
GCGTGTTTGAATGACGGCGACGTCGATATTGCGGACGAGGATGACGAAGA
AGTGTTTTTCGGTCCACAGACACACAAAGAACGATGTGCTGCTGTTGTGG
TCAAAGAAGAAGAAGCTAAAAAAGTTACACCACAAGCTCTCAGTGCTGAA
CAACAAGCTCTCTTGCTTAAAGAATCAGCTCTCCTGAGTGTTCGTATTAA
ACATGGTAGCACACCGAACACGCAATGCAACATCAAGAACAGCCCCATCG
CGGTGGTTCACCCTATGCCTCGCCAGCAACCTCNN Run BLAST on NCBI transcript from alignment at sc0001544:3941..6339+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036957 ID=TCONS_00036957|Name=TCONS_00036957|organism=Clytia hemisphaerica|type=transcript|length=2399bp|location=Sequence derived from alignment at sc0001544:3941..6339+ (Clytia hemisphaerica)
AATAACTAATAATCTTCTCTTAGCttctaagaaaaaaaagatttgaaaaa
cacGTACGATAGCCATTGATACAAAAGTAATATGAGTGGTAAGTCTTGtc
ttttcatcattttcttttcaaagcaaaattttgaacaatttgaaGGGAAT
TAATTCACAATGTGCCTGTGTCACATATTACGGCCTGTTGAACTTTGAAG
TTCCAAGTTTTTATATTCGGTGTacacatcaatttttttcatatatatcG
GCAACCAAGTTGCTTATAAGGCCCAGCcctgaaaatggccaaaaaagaaa
aaaattaaggtgGAAGTTCTGGAAAACTGGAAAACCGAAAAACTTTTTAA
CAGTTCATCCTTCAACCTTGAAGGGGAAAACTTAGCggggtaaaaaaatt
tcctttaatTTAACTAGAAACGTTTTTCGCCAGGAAAAACTTTGTCACTT
GCCCTGCTTGCCCTCTAATATATTGTTATTGTCCTTGACTTATTTTATCT
TCCTTTCCATTTTTGATTCAGTGtcataaaaaagatttcacCTGAAGTTC
AACTATCTTGAGATTGCAAAACAatctttttctcatctttttcGTGTGTC
TCCATAAAAAGATTACATCACGAATATTGAGAATTAAcacaaaataataa
ttttttacaGTATCTCATTATTTTATTCGCTTATTTatgaattgtttttt
attttggtttagGTGTAGTTGATGATTGGTTAAGTAATGAACAATTTGAT
TTCGATGTCACTACTTCACCTGTAGGAGAGTAAGTAATTTCTTATAAGCA
TGGACTCTAGAGGGCTCAACTCTCTCACTCTTTGGTAGGAGAACCCCCTT
CAAGTTAGCCCAAATCTTAGGAACTTACAAATCAACCAACACATTCCTCC
CTTACTTGATTTTGCTCTTGATGCATTGTTTATTGAGAAAGATGAAAGTT
AATTTTGAATAAAGACATTTAACAAGAAACTGATTTAAGTTACATTGAGA
AATGTAACGCACTCAGTGAAAAAATCTTGGCCTCTATTCTTCTTGAAAGG
TCATACCCCCCTTAGAGAAGAAGGGCTTCACATTATGCTTTTAGAGGAAG
AAACTCAGAAGGGGTGCAtttcactagtccgacactttctagtgcgacag
taaaatagtcagaatctataaaataaatccacaatttagaagtctttttt
ccgacgtcacttttgtccgtaaacaaaagattttagaGTATCGAATGTTT
AAcaagggtttttcactgagataatattaacaaaagttcattttggcggc
attagaaataaaggaccaatcaaatttgcATGTTCAGAATTATGCTATGA
TGAGGGTTGTAAACCACAAGCTTAATTTCAGCCCCCCCCAAAAGAAAGGT
TGTAAAAGCAgctacaaaatttaaaaaaagtctggTTTCGGGGCCCAATT
TCAAAGGCGGAACTTAGGGTTTTTATAAGCgcgtggttgcttataaaaaa
tgtgcctCCTTCGGCATTTCATATTTCGtttaacaaatttttatttttat
tatttttttgaatatattttttcattgtcggacaaaattgttgtaatact
gacgcattcgtcaaatccaaggtcggacatttttactgtcggactagaaa
gtgtcggactactgacgacctcccctCAGAAGTATTGGGcaaaaattctt
gattttttctggATTTGTTCAACATGACACTCTAATATAATTACTATAAT
agtaaagaattaaaatattaaaaaatactgCACAAAGTTtgcaaaaacaa
taaaacatttaaaattcgattttttaaggACTTTTTTTACTATTGCCAAA
GACAGCAATATAACTATTTCAATCACCCagaaataaaaacgaaaacttCC
TCAATTCCTATCTCCTTAGCAATGTGCTTTGCATTGTCAATCAATCGAAA
CAAACTACCGATGCCGACGCGTGTTTGAATGACGGCGACGTNCAAAGACA
GCAATATAACTATTGCAATCACCCagaaataaaaacgaaaacttCCTCAA
TTCCTATCTCCTTAGCAATGTGCTTTGCATTGTCAATCAATCGAAACAAA
CTACTGATGCCGACGCGTGTTTGAATGACGGCGACGTCGATATTGCGGAC
GAGGATGACGAAGAAGTGTTTTTCGGTCCACAGACACACAAAGAACGATG
TGCTGCTGTTGTGGTCAAAGAAGAAGAAGCTAAAAAAGTTACACCACAAG
CTCTCAGTGCTGAACAACAAGCTCTCTTGCTTAAAGAATCAGCTCTCCTG
AGTGTTCGTATTAAACATGGTAGCACACCGAACACGCAATGCAACATCAA
GAACAGCCCCATCGCGGTGGTTCACCCTATGCCTCGCCAGCAACCTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036957-exon-sc0001544-1491911889:3941..4028 | TCONS_00036957-exon-sc0001544-1491911889:3941..4028 | Clytia hemisphaerica | exon |
| TCONS_00036957-exon-sc0001544-1510915933:3941..4028 | TCONS_00036957-exon-sc0001544-1510915933:3941..4028 | Clytia hemisphaerica | exon |
| TCONS_00036957-exon-sc0001544-1575043694:3941..4028 | TCONS_00036957-exon-sc0001544-1575043694:3941..4028 | Clytia hemisphaerica | exon |
| TCONS_00036957-exon-sc0001544-1491911889:4653..4719 | TCONS_00036957-exon-sc0001544-1491911889:4653..4719 | Clytia hemisphaerica | exon |
| TCONS_00036957-exon-sc0001544-1510915933:4653..4719 | TCONS_00036957-exon-sc0001544-1510915933:4653..4719 | Clytia hemisphaerica | exon |
| TCONS_00036957-exon-sc0001544-1575043694:4653..4719 | TCONS_00036957-exon-sc0001544-1575043694:4653..4719 | Clytia hemisphaerica | exon |
| TCONS_00036957-exon-sc0001544-1491911889:5860..6339 | TCONS_00036957-exon-sc0001544-1491911889:5860..6339 | Clytia hemisphaerica | exon |
| TCONS_00036957-exon-sc0001544-1510915933:5860..6339 | TCONS_00036957-exon-sc0001544-1510915933:5860..6339 | Clytia hemisphaerica | exon |
| TCONS_00036957-exon-sc0001544-1575043694:5860..6339 | TCONS_00036957-exon-sc0001544-1575043694:5860..6339 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001544 | supercontig | sc0001544:3941..6339 + |
Blast
The following BLAST results are available for this feature:
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