TCONS_00036923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036923
Unique NameTCONS_00036923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036923 ID=TCONS_00036923|Name=TCONS_00036923|organism=Clytia hemisphaerica|type=transcript|length=680bp
ggggtacctaaaccctGGAGGATCCTATGTGATCTAGAAACACTCCTAAA
AGTAATAAAGAAgagatttgataaaagtgatctttgaaacacttttaaaa
tttacgaaaaaagcgatttgacAAGAGAAAACTTAGACACACTCTCGAAA
GTTacgaaaaaagcgatttgataaaagagAGCTTAGAAACACTTTTAAAa
tttacgaagaaagcgatttgataaaagtgaaccTAGAAAAACTCTTAAAG
TTATGAAGAGGCAATCAAAAAAGAATAGAGAATAGCGTTTAAAAGGCAGG
GATGTACAGAAGATTTGCCCTCAAATCAAGATAATTCATCTTTTCATTCT
GGCACTATGACTGacataaaagattttcagtcggtcaaatggccttttca
gtcggacattgacTGGTGATcgacgcttatttgcagccctgtatGTATAT
GGATTATGGAAAGAATTCAGTTGATTTAAAAggttttaattgtttctttt
tcttttgccaTATATGTACTAAAAGATTCTACAATGTTTGGGGAACTCAA
ATATCCAaaagtttttccaattttcattgGCAATTATGGGCGATTTCAAT
AGGCAATGTCTTTGcaaggttttatttttcttcgtgAATTTTCATATTCA
ATCTTTATTGAAAGATTGGATAATTTACCA
Run BLAST on NCBI

transcript from alignment at sc0001535:14001..14680

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036923 ID=TCONS_00036923|Name=TCONS_00036923|organism=Clytia hemisphaerica|type=transcript|length=680bp|location=Sequence derived from alignment at sc0001535:14001..14680 (Clytia hemisphaerica)
TGGTAAATTATCCAATCTTTCAATAAAGATTGAATATGAAAATTcacgaa
gaaaaataaaaccttgCAAAGACATTGCCTATTGAAATCGCCCATAATTG
CcaatgaaaattggaaaaactttTGGATATTTGAGTTCCCCAAACATTGT
AGAATCTTTTAGTACATATAtggcaaaagaaaaagaaacaattaaaaccT
TTTAAATCAACTGAATTCTTTCCATAATCCATATACatacagggctgcaa
ataagcgtcgATCACCAgtcaatgtccgactgaaaaggccatttgaccga
ctgaaaatcttttatgtCAGTCATAGTGCCAGAATGAAAAGATGAATTAT
CTTGATTTGAGGGCAAATCTTCTGTACATCCCTGCCTTTTAAACGCTATT
CTCTATTCTTTTTTGATTGCCTCTTCATAACTTTAAGAGTTTTTCTAggt
tcacttttatcaaatcgctttcttcgtaaatTTTAAAAGTGTTTCTAAGC
TctcttttatcaaatcgcttttttcgtAACTTTCGAGAGTGTGTCTAAGT
TTTCTCTTgtcaaatcgcttttttcgtaaattttaaaagtgtttcaaaga
tcacttttatcaaatctcTTCTTTATTACTTTTAGGAGTGTTTCTAGATC
ACATAGGATCCTCCagggtttaggtacccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021810XLOC_021810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036923-exon-sc0001535-1491911889:14001..14680TCONS_00036923-exon-sc0001535-1491911889:14001..14680Clytia hemisphaericaexon
TCONS_00036923-exon-sc0001535-1510915933:14001..14680TCONS_00036923-exon-sc0001535-1510915933:14001..14680Clytia hemisphaericaexon
TCONS_00036923-exon-sc0001535-1575043694:14001..14680TCONS_00036923-exon-sc0001535-1575043694:14001..14680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001535supercontigsc0001535:14001..14680 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301297	0.220359	0.511716	0.667512	1.52369	0.401346	0.77473	0.815955	0.380846	0.314493	0.763136	0.100331	0.200383	0	0	0.229503	0	0.173872	0.160143	0	0.364139	0.319706	0.172731	0.0785186	0.242617	0.360883	0.206569	0.661368	0.167208	0.170359
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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