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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036822 ID=TCONS_00036822|Name=TCONS_00036822|organism=Clytia hemisphaerica|type=transcript|length=1872bp
GTTCAAACGAACTCAGAGGTTGCAGCAAACGGACGTATCTATCTACTCTC
TAACTTTAAACTTATAAACTTACAAAATGGCTGAAGATGATGTTGCCGCT
CTTGTCGTAGACAATGGATCTGGTATGTGCAAAGCTGGATTTGCTGGAGA
TGATGCTCCAAGAGCTGTCTTCCCCTCCATTGTTGGACGTCCTCGTCACC
AAGGTGTCATGGTTGGTATGGGACAAAAAGACTCCTATGTCGGTGATGAA
GCTCAATCCAAAAGAGGTATCCTCACCTTGAAATACCCCATCGAACACGG
AATCGTCACCAACTGGGATGATATGGAAAAgATCTGGCATCACACTTTCT
ACAACGAACTCCGTGTTGCACCAGAAGAACACCCCGTCCTTCTTACTGAA
GCTCCTTTGAACCCCAAAGCCAACAGAGAAAAGATGACCCAAATCATGTT
CGAAACCTTCAACTCCCCAGCTATGTATGTCGCCATCCAAGCTGTCTTAT
CTTTGTACGCTTCTGGACGTACCACCGGTATTGTCTTGGATTCTGGAGAT
GGTGTTTCCCACACTGTCCCAATCTACGAAGGTTATGCTCTTCCCCACGC
CATCATCCGTCTTGATTTGGCTGGACGTGATTTGACCGACTACTTGATGA
AAATCTTGACCGAACGTGGATACTCCTTCACCACCACTGCTGAACGTGAA
ATTGTCCGTGAcatcaaagaaaaattgtgCTATGTTGCCTTGGACTTCGA
ACAAGAAATGCAAACTGCTGCCTCAAGCTCCAGCTTGGAGAAATCCTATG
AATTACCTGATGGACAAGTCATCACCATTGGAAATGAACGATTCCGATGC
CCAGAAACCCTCTTCCAACCTGCCTTCATTGGTATGGAATCTGCTGGTAT
CCACGAAACCACCTACAACTCCATCATGAAATGCGATGTTGACATCCGTA
AAGATTTGTATGCCAACACTGTCTTGTCTGGAGGTACGACTATGTTCCCA
GGTATTGCTGACCGTATGCAAAAGGAAATCTCTGCCCTCGCTCCACCAAC
CATGAAAATCAAGATCATCGCTCCACCAGAAAGAAAATACTCCGTCTGGA
TTGGAGGATCCATCTTGGCCTCACTCTCCACCTTCCAACAGATGTGGATC
TCCAAACAAGAATATGATGAATCTGGTCCATCCATCGTCCACAGAAAATG
CTTCTAAGTGCATTGCCATACTGGTAGCTCTTGGCTTGCGTTTGCTAATT
AACATCAAGGCAAAGGACAATCGTTATGTGAAGCAGTGTTTACCACCAGA
ACTGTTCTGTTCACTTTGATTTGAACGattatttttgtaaaacatTTGTA
CAGATTTTGTGCACTTGACTTTCTTGGAAGTCTTGGTTAACCCCAATCAA
AATTTTGTAGTAAAATCTCaatcaaaaaatgtaaataataaCTTTAGGGA
ATATTGcaataaaagaaaattaaaatgctTCTTCCCGAAACATTCAATAT
TCACTCGTTTAAATTTCCTTCCATGTCTGACTTTGCTCAATAAACTTTCA
CTTTCGGTTTTGAATTTTAATCCTGGATTAATCCCAACTTTGCTTTCTGG
TGATTTTGATGGAACTCAGGCTTCCAGTCTACCAATAACTGTCAATTTGC
AATTTATCTGATTACCATTTTAGgactttttagcattcaaaactTGCATG
CCCAGCTGATTTCATTAACacaatttaaggctcaaaagtcTGTACAGTTC
AAGCAAATCCCTCAttagaaagataattttgagtggaTTTATGAATGCTT
TTAAAAATGTGTAGGTGTTACAAAAATGACTATGTGGCTATGATTTCTCG
TCTCAtttaaagttgaaaatga Run BLAST on NCBI protein sequence of TCONS_00036822-protein >TCONS_00036822-protein ID=TCONS_00036822-protein|Name=TCONS_00036822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MAEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
GIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVIT
IGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVL
SGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASL
STFQQMWISKQEYDESGPSIVHRKCF Run BLAST on NCBI transcript from alignment at sc0001520:34563..36855+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036822 ID=TCONS_00036822|Name=TCONS_00036822|organism=Clytia hemisphaerica|type=transcript|length=2293bp|location=Sequence derived from alignment at sc0001520:34563..36855+ (Clytia hemisphaerica)
GTTCAAACGAACTCAGAGGTTGCAGCAAACGGACGTATCTATCTACTCTC
TAACTTTAAACTTATAAACTTACAAAATGGCTGAAGATGATGTTGCCGCT
CTTGTCGTAGACAATGGATCTGGTATGTGCAAAGCTGGATTTGCTGGAGA
TGATGCTCCAAGAGCTGTCTTCCCCTCCATTGTTGGACGTCCTCGTCACC
AAGGTGTCATGGTTGGTATGGGACAAAAAGACTCCTATGTCGGTGATGAA
GCTCAATCCAAAAGAGGTATCCTCACCTTGAAATACCCCATCGAACACGG
AATCGTCACCAACTGGGATGATATGGAAAAggtaaatttattttcaagct
tttttcAATGTCAATCTTTGAAtctaaattttcattgaaagtgGGTGTGT
CCTGAGCTTCACATTTCCAGTTATTTATAGTctatttattttctatttcc
ttTGGGAATCAGTCCAAGGTAATTAGATATCTTACTGTTGTAGGACCTAT
GTGTGATAACGACTGTGAACAACAAAATCATTTCTTTCTATTTAGATCTG
GCATCACACTTTCTACAACGAACTCCGTGTTGCACCAGAAGAACACCCCG
TCCTTCTTACTGAAGCTCCTTTGAACCCCAAAGCCAACAGAGAAAAGATG
ACCCAAGTAAGTACTAATTAAAAATGCTATTAGATTAGTCCTTCTCTTAA
CCCAGAAAAGGACCTTTTCTGACAATTTACATAGTTTGTTGTTTAAATCG
AAATTAATGGCAGAAGATCAGTTTCAGCTTGAAACATCCTTCCTATCTAC
TCACATCTATCCTTTGGACTTGAAAGTAGAACATATTTTAAAACTGACTT
ATCCCTTTTCCAGATCATGTTCGAAACCTTCAACTCCCCAGCTATGTATG
TCGCCATCCAAGCTGTCTTATCTTTGTACGCTTCTGGACGTACCACCGGT
ATTGTCTTGGATTCTGGAGATGGTGTTTCCCACACTGTCCCAATCTACGA
AGGTTATGCTCTTCCCCACGCCATCATCCGTCTTGATTTGGCTGGACGTG
ATTTGACCGACTACTTGATGAAAATCTTGACCGAACGTGGATACTCCTTC
ACCACCACTGCTGAACGTGAAATTGTCCGTGAcatcaaagaaaaattgtg
CTATGTTGCCTTGGACTTCGAACAAGAAATGCAAACTGCTGCCTCAAGCT
CCAGCTTGGAGAAATCCTATGAATTACCTGATGGACAAGTCATCACCATT
GGAAATGAACGATTCCGATGCCCAGAAACCCTCTTCCAACCTGCCTTCAT
TGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCATGA
AATGCGATGTTGACATCCGTAAAGATTTGTATGCCAACACTGTCTTGTCT
GGAGGTACGACTATGTTCCCAGGTATTGCTGACCGTATGCAAAAGGAAAT
CTCTGCCCTCGCTCCACCAACCATGAAAATCAAGATCATCGCTCCACCAG
AAAGAAAATACTCCGTCTGGATTGGAGGATCCATCTTGGCCTCACTCTCC
ACCTTCCAACAGATGTGGATCTCCAAACAAGAATATGATGAATCTGGTCC
ATCCATCGTCCACAGAAAATGCTTCTAAGTGCATTGCCATACTGGTAGCT
CTTGGCTTGCGTTTGCTAATTAACATCAAGGCAAAGGACAATCGTTATGT
GAAGCAGTGTTTACCACCAGAACTGTTCTGTTCACTTTGATTTGAACGat
tatttttgtaaaacatTTGTACAGATTTTGTGCACTTGACTTTCTTGGAA
GTCTTGGTTAACCCCAATCAAAATTTTGTAGTAAAATCTCaatcaaaaaa
tgtaaataataaCTTTAGGGAATATTGcaataaaagaaaattaaaatgct
TCTTCCCGAAACATTCAATATTCACTCGTTTAAATTTCCTTCCATGTCTG
ACTTTGCTCAATAAACTTTCACTTTCGGTTTTGAATTTTAATCCTGGATT
AATCCCAACTTTGCTTTCTGGTGATTTTGATGGAACTCAGGCTTCCAGTC
TACCAATAACTGTCAATTTGCAATTTATCTGATTACCATTTTAGgacttt
ttagcattcaaaactTGCATGCCCAGCTGATTTCATTAACacaatttaag
gctcaaaagtcTGTACAGTTCAAGCAAATCCCTCAttagaaagataattt
tgagtggaTTTATGAATGCTTTTAAAAATGTGTAGGTGTTACAAAAATGA
CTATGTGGCTATGATTTCTCGTCTCAtttaaagttgaaaatga Coding sequence (CDS) from alignment at sc0001520:34563..36855+ >TCONS_00036822 ID=TCONS_00036822|Name=TCONS_00036822|organism=Clytia hemisphaerica|type=CDS|length=3393bp|location=Sequence derived from alignment at sc0001520:34563..36855+ (Clytia hemisphaerica)
ATGGCTGAAGATGATGTTGCCGCTCTTGTCGTAGACAATGGATCTGGTAT
GTGCAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTCTTCCCCT
CCATTGTTGGACGTCCTCGTCACCAAGGTGTCATGGTTGGTATGGGACAA
AAAGACTCCTATGTCGGTGATGAAGCTCAATCCAAAAGAGGTATCCTCAC
CTTGAAATACCCCATCGAACACGGAATCGTCACCAACTGGGATGATATGG
AAAAgATCTGGCATCACACTTTCTACAACGAACTCCGTGTTGCACCAGAA
GAACACCCCGTCCTTCTTACTGAAGCTCCTTTGAACCCCAAAGCCAACAG
AGAAAAGATGACCCAAATCATGTTCGAAACCTTCAACTCCCCAGCTATGT
ATGTCGCCATCCAAGCTGTCTTATCTTTGTACGCTTCTGGACGTACCACC
GGTATTGTCTTGGATTCTGGAGATGGTGTTTCCCACACTGTCCCAATCTA
CGAAGGTTATGCTCTTCCCCACGCCATCATCCGTCTTGATTTGGCTGGAC
GTGATTTGACCGACTACTTGATGAAAATCTTGACCGAACGTGGATACTCC
TTCACCACCACTGCTGAACGTGAAATTGTCCGTGAcatcaaagaaaaatt
gtgCTATGTTGCCTTGGACTTCGAACAAGAAATGCAAACTGCTGCCTCAA
GCTCCAGCTTGGAGAAATCCTATGAATTACCTGATGGACAAGTCATCACC
ATTGGAAATGAACGATTCCGATGCCCAGAAACCCTCTTCCAACCTGCCTT
CATTGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCA
TGAAATGCGATGTTGACATCCGTAAAGATTTGTATGCCAACACTGTCTTG
TCTGGAGGTACGACTATGTTCCCAGGTATTGCTGACCGTATGCAAAAGGA
AATCTCTGCCCTCGCTCCACCAACCATGAAAATCAAGATCATCGCTCCAC
CAGAAAGAAAATACTCCGTCTGGATTGGAGGATCCATCTTGGCCTCACTC
TCCACCTTCCAACAGATGTGGATCTCCAAACAAGAATATGATGAATCTGG
TCCATCCATCGTCCACAGAAAATGCTTCTAAATGGCTGAAGATGATGTTG
CCGCTCTTGTCGTAGACAATGGATCTGGTATGTGCAAAGCTGGATTTGCT
GGAGATGATGCTCCAAGAGCTGTCTTCCCCTCCATTGTTGGACGTCCTCG
TCACCAAGGTGTCATGGTTGGTATGGGACAAAAAGACTCCTATGTCGGTG
ATGAAGCTCAATCCAAAAGAGGTATCCTCACCTTGAAATACCCCATCGAA
CACGGAATCGTCACCAACTGGGATGATATGGAAAAgATCTGGCATCACAC
TTTCTACAACGAACTCCGTGTTGCACCAGAAGAACACCCCGTCCTTCTTA
CTGAAGCTCCTTTGAACCCCAAAGCCAACAGAGAAAAGATGACCCAAATC
ATGTTCGAAACCTTCAACTCCCCAGCTATGTATGTCGCCATCCAAGCTGT
CTTATCTTTGTACGCTTCTGGACGTACCACCGGTATTGTCTTGGATTCTG
GAGATGGTGTTTCCCACACTGTCCCAATCTACGAAGGTTATGCTCTTCCC
CACGCCATCATCCGTCTTGATTTGGCTGGACGTGATTTGACCGACTACTT
GATGAAAATCTTGACCGAACGTGGATACTCCTTCACCACCACTGCTGAAC
GTGAAATTGTCCGTGAcatcaaagaaaaattgtgCTATGTTGCCTTGGAC
TTCGAACAAGAAATGCAAACTGCTGCCTCAAGCTCCAGCTTGGAGAAATC
CTATGAATTACCTGATGGACAAGTCATCACCATTGGAAATGAACGATTCC
GATGCCCAGAAACCCTCTTCCAACCTGCCTTCATTGGTATGGAATCTGCT
GGTATCCACGAAACCACCTACAACTCCATCATGAAATGCGATGTTGACAT
CCGTAAAGATTTGTATGCCAACACTGTCTTGTCTGGAGGTACGACTATGT
TCCCAGGTATTGCTGACCGTATGCAAAAGGAAATCTCTGCCCTCGCTCCA
CCAACCATGAAAATCAAGATCATCGCTCCACCAGAAAGAAAATACTCCGT
CTGGATTGGAGGATCCATCTTGGCCTCACTCTCCACCTTCCAACAGATGT
GGATCTCCAAACAAGAATATGATGAATCTGGTCCATCCATCGTCCACAGA
AAATGCTTCTAAATGGCTGAAGATGATGTTGCCGCTCTTGTCGTAGACAA
TGGATCTGGTATGTGCAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAG
CTGTCTTCCCCTCCATTGTTGGACGTCCTCGTCACCAAGGTGTCATGGTT
GGTATGGGACAAAAAGACTCCTATGTCGGTGATGAAGCTCAATCCAAAAG
AGGTATCCTCACCTTGAAATACCCCATCGAACACGGAATCGTCACCAACT
GGGATGATATGGAAAAgATCTGGCATCACACTTTCTACAACGAACTCCGT
GTTGCACCAGAAGAACACCCCGTCCTTCTTACTGAAGCTCCTTTGAACCC
CAAAGCCAACAGAGAAAAGATGACCCAAATCATGTTCGAAACCTTCAACT
CCCCAGCTATGTATGTCGCCATCCAAGCTGTCTTATCTTTGTACGCTTCT
GGACGTACCACCGGTATTGTCTTGGATTCTGGAGATGGTGTTTCCCACAC
TGTCCCAATCTACGAAGGTTATGCTCTTCCCCACGCCATCATCCGTCTTG
ATTTGGCTGGACGTGATTTGACCGACTACTTGATGAAAATCTTGACCGAA
CGTGGATACTCCTTCACCACCACTGCTGAACGTGAAATTGTCCGTGAcat
caaagaaaaattgtgCTATGTTGCCTTGGACTTCGAACAAGAAATGCAAA
CTGCTGCCTCAAGCTCCAGCTTGGAGAAATCCTATGAATTACCTGATGGA
CAAGTCATCACCATTGGAAATGAACGATTCCGATGCCCAGAAACCCTCTT
CCAACCTGCCTTCATTGGTATGGAATCTGCTGGTATCCACGAAACCACCT
ACAACTCCATCATGAAATGCGATGTTGACATCCGTAAAGATTTGTATGCC
AACACTGTCTTGTCTGGAGGTACGACTATGTTCCCAGGTATTGCTGACCG
TATGCAAAAGGAAATCTCTGCCCTCGCTCCACCAACCATGAAAATCAAGA
TCATCGCTCCACCAGAAAGAAAATACTCCGTCTGGATTGGAGGATCCATC
TTGGCCTCACTCTCCACCTTCCAACAGATGTGGATCTCCAAACAAGAATA
TGATGAATCTGGTCCATCCATCGTCCACAGAAAATGCTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00036822-exon-sc0001520-1491911889:34563..34893 | TCONS_00036822-exon-sc0001520-1491911889:34563..34893 | Clytia hemisphaerica | exon |
| TCONS_00036822-exon-sc0001520-1510915933:34563..34893 | TCONS_00036822-exon-sc0001520-1510915933:34563..34893 | Clytia hemisphaerica | exon |
| TCONS_00036822-exon-sc0001520-1575043694:34563..34893 | TCONS_00036822-exon-sc0001520-1575043694:34563..34893 | Clytia hemisphaerica | exon |
| TCONS_00036822-exon-sc0001520-1491911889:35108..35218 | TCONS_00036822-exon-sc0001520-1491911889:35108..35218 | Clytia hemisphaerica | exon |
| TCONS_00036822-exon-sc0001520-1510915933:35108..35218 | TCONS_00036822-exon-sc0001520-1510915933:35108..35218 | Clytia hemisphaerica | exon |
| TCONS_00036822-exon-sc0001520-1575043694:35108..35218 | TCONS_00036822-exon-sc0001520-1575043694:35108..35218 | Clytia hemisphaerica | exon |
| TCONS_00036822-exon-sc0001520-1491911889:35426..36855 | TCONS_00036822-exon-sc0001520-1491911889:35426..36855 | Clytia hemisphaerica | exon |
| TCONS_00036822-exon-sc0001520-1510915933:35426..36855 | TCONS_00036822-exon-sc0001520-1510915933:35426..36855 | Clytia hemisphaerica | exon |
| TCONS_00036822-exon-sc0001520-1575043694:35426..36855 | TCONS_00036822-exon-sc0001520-1575043694:35426..36855 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001520 | supercontig | sc0001520:34563..36855 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00036822 vs. Swiss-Prot (Human)
Match: ACTB (Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1) HSP 1 Score: 761.14 bits (1964), Expect = 0.000e+0 Identity = 359/374 (95.99%), Postives = 370/374 (98.93%), Query Frame = 2
Query: 83 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 1204
+DD+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPE LFQP+F+GMES GIHETT+NSIMKCDVDIRKDLYANTVLSGGTTM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
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