TCONS_00036787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036787
Unique NameTCONS_00036787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036787 ID=TCONS_00036787|Name=TCONS_00036787|organism=Clytia hemisphaerica|type=transcript|length=648bp
TGGGTGGATTGTCCTGTTGATTCTGTTGGCCATTGGCGAAGTTGATAAGC
TCTTTCTGTTGGTAGATTTTGATTTCTCGTTCCAGGAAGGTGAGAAGTTT
AGTCCACAACTCTTTACCATCAGGTGTCTCGTCTTCTTCTGCACACGAGG
TCAGCCACTTCATGGTGATTTGATTGCCCATCACATTGTAAATTTGATTG
ATACCGTCACCATAGTAGAGATGTGGTTCGATTTGATGCTCACTTGCCAG
ACTCATCAATTCTTTCATTAGATTGATAATCTTTCCAAGAGCTTCGACGA
ATTTGGTTGGCTCTCTAATTTTCGACAATTTATCTAATTGGGTAAGCTCA
AAATGTTTGACGTCACCAAAGCTTTTCTTAAGAATGCTCCAGATTTCGTC
GATGTCTGACTCATGTTTCACAATAGATAATGCTGTACCCTCaaggaaat
tatttttcagaaaGTCTGGCATCATATGCTTTGGAACGGTAGTCGAATAG
AGTTTATCAAAGTCACTTTTAAACTTGTAGAAGTTGATGGATGAAGAGTA
GCCACTGAATTGAGGAAGTTTGATTGAAAACTGAGATTTGTTGAATGTCT
TGACTTTATTGAGGTCACGCCCTTTCATCTCAGAATCGATAAATTCTC
Run BLAST on NCBI

protein sequence of TCONS_00036787-protein

>TCONS_00036787-protein ID=TCONS_00036787-protein|Name=TCONS_00036787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
EFIDSEMKGRDLNKVKTFNKSQFSIKLPQFSGYSSSINFYKFKSDFDKLY
STTVPKHMMPDFLKNNFLEGTALSIVKHESDIDEIWSILKKSFGDVKHFE
LTQLDKLSKIREPTKFVEALGKIINLMKELMSLASEHQIEPHLYYGDGIN
QIYNVMGNQITMKWLTSCAEEDETPDGKELWTKLLTFLEREIKIYQQKEL
INFANGQQNQQDNPP
Run BLAST on NCBI

transcript from alignment at sc0001514:39293..39940

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036787 ID=TCONS_00036787|Name=TCONS_00036787|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at sc0001514:39293..39940 (Clytia hemisphaerica)
GAGAATTTATCGATTCTGAGATGAAAGGGCGTGACCTCAATAAAGTCAAG
ACATTCAACAAATCTCAGTTTTCAATCAAACTTCCTCAATTCAGTGGCTA
CTCTTCATCCATCAACTTCTACAAGTTTAAAAGTGACTTTGATAAACTCT
ATTCGACTACCGTTCCAAAGCATATGATGCCAGACtttctgaaaaataat
ttccttGAGGGTACAGCATTATCTATTGTGAAACATGAGTCAGACATCGA
CGAAATCTGGAGCATTCTTAAGAAAAGCTTTGGTGACGTCAAACATTTTG
AGCTTACCCAATTAGATAAATTGTCGAAAATTAGAGAGCCAACCAAATTC
GTCGAAGCTCTTGGAAAGATTATCAATCTAATGAAAGAATTGATGAGTCT
GGCAAGTGAGCATCAAATCGAACCACATCTCTACTATGGTGACGGTATCA
ATCAAATTTACAATGTGATGGGCAATCAAATCACCATGAAGTGGCTGACC
TCGTGTGCAGAAGAAGACGAGACACCTGATGGTAAAGAGTTGTGGACTAA
ACTTCTCACCTTCCTGGAACGAGAAATCAAAATCTACCAACAGAAAGAGC
TTATCAACTTCGCCAATGGCCAACAGAATCAACAGGACAATCCACCCA

Coding sequence (CDS) from alignment at sc0001514:39293..39940

>TCONS_00036787 ID=TCONS_00036787|Name=TCONS_00036787|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0001514:39293..39940 (Clytia hemisphaerica)
GAATTTATCGATTCTGAGATGAAAGGGCGTGACCTCAATAAAGTCAAGAC
ATTCAACAAATCTCAGTTTTCAATCAAACTTCCTCAATTCAGTGGCTACT
CTTCATCCATCAACTTCTACAAGTTTAAAAGTGACTTTGATAAACTCTAT
TCGACTACCGTTCCAAAGCATATGATGCCAGACtttctgaaaaataattt
ccttGAGGGTACAGCATTATCTATTGTGAAACATGAGTCAGACATCGACG
AAATCTGGAGCATTCTTAAGAAAAGCTTTGGTGACGTCAAACATTTTGAG
CTTACCCAATTAGATAAATTGTCGAAAATTAGAGAGCCAACCAAATTCGT
CGAAGCTCTTGGAAAGATTATCAATCTAATGAAAGAATTGATGAGTCTGG
CAAGTGAGCATCAAATCGAACCACATCTCTACTATGGTGACGGTATCAAT
CAAATTTACAATGTGATGGGCAATCAAATCACCATGAAGTGGCTGACCTC
GTGTGCAGAAGAAGACGAGACACCTGATGGTAAAGAGTTGTGGACTAAAC
TTCTCACCTTCCTGGAACGAGAAATCAAAATCTACCAACAGAAAGAGCTT
ATCAACTTCGCCAATGGCCAACAGAATCAACAGGACAATCCACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021731XLOC_021731Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036787-proteinTCONS_00036787-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036787-exon-sc0001514-1491911889:39293..39940TCONS_00036787-exon-sc0001514-1491911889:39293..39940Clytia hemisphaericaexon
TCONS_00036787-exon-sc0001514-1510915933:39293..39940TCONS_00036787-exon-sc0001514-1510915933:39293..39940Clytia hemisphaericaexon
TCONS_00036787-exon-sc0001514-1575043694:39293..39940TCONS_00036787-exon-sc0001514-1575043694:39293..39940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001514supercontigsc0001514:39293..39940 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.498121	0.771794	0.411072	0.537127	0.653901	0.143814	0.519502	0.591914	0.190461	0.352681	0	0	0	0	0.0917787	0.120781	0	0	0	0	0	0	0	0.168484	0.0867674	0	0	0	0.0896982	0.133627
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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