TCONS_00036786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036786
Unique NameTCONS_00036786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036786 ID=TCONS_00036786|Name=TCONS_00036786|organism=Clytia hemisphaerica|type=transcript|length=702bp
TCATACCCTTCTTTGAGCttagtgacgtcatcaagttTTCCGGTAGGGCA
TTTCGAGATGAGAGTGCAGTGTGAGTagaaagtctctcaaagtcCTTCGA
CATTGACGTGATGCAATTTTTCATCTCTTCGAGTTCCTCATTAGTTGATT
CAGTGATGTTTGTTTTAACTTCCTCAAGATTCGTACCGTTGGGTTCCTGG
ATGTTTGGTTGGATTTTTGATTTCAACTCTTTGAGTTTTCCTTGTACGTC
TGTGAGCTCGAAGCTGAACCATTGTTGATCTGCGACAATGTGGCGGGAAG
ATGCGACACTCTGACGTGCGGACATGACGGTTTGAGCATTGAGAAGATAC
GTACTGATAGATGTCATGACTGCTTTGTATCTGGGGGCTTCTCTGCCAAA
TTTTGTTCGGTAGAATGATCGAAGATATTCTGCATGCTTGCAGTTATTCT
CGATGACATTGTTGGGTGTGCTTGCGATGATCGGATGCTCTGCGATGAAA
TCGTCAATCTCATCAATCATGCAATCTGCATTGATTTCGTCAATTAATTG
AGGTTTGGTATCCATGACGTTGTGAATTTCTTGTTGTTTGAATGTAGTCG
GACAGAAAATGATTGGACACAAGTGTTAGTAACTTTTGTGATAGAGTTCa
aactgaatgaataaaaaaaagacaaGATTTAATCTATGTGACAAAGTGAG
AA
Run BLAST on NCBI

protein sequence of TCONS_00036786-protein

>TCONS_00036786-protein ID=TCONS_00036786-protein|Name=TCONS_00036786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MDTKPQLIDEINADCMIDEIDDFIAEHPIIASTPNNVIENNCKHAEYLRS
FYRTKFGREAPRYKAVMTSISTYLLNAQTVMSARQSVASSRHIVADQQWF
SFELTDVQGKLKELKSKIQPNIQEPNGTNLEEVKTNITESTNEELEEMKN
CITSMSKDFERLSTHTALSSRNALPENLMTSLSSKKGM
Run BLAST on NCBI

transcript from alignment at sc0001514:38436..39137

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036786 ID=TCONS_00036786|Name=TCONS_00036786|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at sc0001514:38436..39137 (Clytia hemisphaerica)
TTCTCACTTTGTCACATAGATTAAATCttgtcttttttttattcattcag
tttGAACTCTATCACAAAAGTTACTAACACTTGTGTCCAATCATTTTCTG
TCCGACTACATTCAAACAACAAGAAATTCACAACGTCATGGATACCAAAC
CTCAATTAATTGACGAAATCAATGCAGATTGCATGATTGATGAGATTGAC
GATTTCATCGCAGAGCATCCGATCATCGCAAGCACACCCAACAATGTCAT
CGAGAATAACTGCAAGCATGCAGAATATCTTCGATCATTCTACCGAACAA
AATTTGGCAGAGAAGCCCCCAGATACAAAGCAGTCATGACATCTATCAGT
ACGTATCTTCTCAATGCTCAAACCGTCATGTCCGCACGTCAGAGTGTCGC
ATCTTCCCGCCACATTGTCGCAGATCAACAATGGTTCAGCTTCGAGCTCA
CAGACGTACAAGGAAAACTCAAAGAGTTGAAATCAAAAATCCAACCAAAC
ATCCAGGAACCCAACGGTACGAATCTTGAGGAAGTTAAAACAAACATCAC
TGAATCAACTAATGAGGAACTCGAAGAGATGAAAAATTGCATCACGTCAA
TGTCGAAGgactttgagagactttctACTCACACTGCACTCTCATCTCGA
AATGCCCTACCGGAAaacttgatgacgtcactaaGCTCAAAGAAGGGTAT
GA

Coding sequence (CDS) from alignment at sc0001514:38436..39137

>TCONS_00036786 ID=TCONS_00036786|Name=TCONS_00036786|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0001514:38436..39137 (Clytia hemisphaerica)
ATGGATACCAAACCTCAATTAATTGACGAAATCAATGCAGATTGCATGAT
TGATGAGATTGACGATTTCATCGCAGAGCATCCGATCATCGCAAGCACAC
CCAACAATGTCATCGAGAATAACTGCAAGCATGCAGAATATCTTCGATCA
TTCTACCGAACAAAATTTGGCAGAGAAGCCCCCAGATACAAAGCAGTCAT
GACATCTATCAGTACGTATCTTCTCAATGCTCAAACCGTCATGTCCGCAC
GTCAGAGTGTCGCATCTTCCCGCCACATTGTCGCAGATCAACAATGGTTC
AGCTTCGAGCTCACAGACGTACAAGGAAAACTCAAAGAGTTGAAATCAAA
AATCCAACCAAACATCCAGGAACCCAACGGTACGAATCTTGAGGAAGTTA
AAACAAACATCACTGAATCAACTAATGAGGAACTCGAAGAGATGAAAAAT
TGCATCACGTCAATGTCGAAGgactttgagagactttctACTCACACTGC
ACTCTCATCTCGAAATGCCCTACCGGAAaacttgatgacgtcactaaGCT
CAAAGAAGGGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021730XLOC_021730Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036786-proteinTCONS_00036786-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036786-exon-sc0001514-1491911889:38436..39137TCONS_00036786-exon-sc0001514-1491911889:38436..39137Clytia hemisphaericaexon
TCONS_00036786-exon-sc0001514-1510915933:38436..39137TCONS_00036786-exon-sc0001514-1510915933:38436..39137Clytia hemisphaericaexon
TCONS_00036786-exon-sc0001514-1575043694:38436..39137TCONS_00036786-exon-sc0001514-1575043694:38436..39137Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001514supercontigsc0001514:38436..39137 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47307	1.84045	1.46689	0.473956	0.679323	1.33191	0.825989	1.30595	0.66706	1.04989	1.06358	0.549958	0.205916	0.807939	0.0408629	0.175409	0.0549412	0.143398	0.0764982	0	0	0.101813	0.660091	0.375074	0.927161	2.48241	0.0986755	0	0.452606	0.0813782
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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