|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036758 ID=TCONS_00036758|Name=TCONS_00036758|organism=Clytia hemisphaerica|type=transcript|length=1986bp
ATACAATAAAGACTGTACTTTcagaaatgttttaaaaatatcataaaagt
TAAACTTTATGTGAAGCATGTGAAAATGATTAATCTGACTCTAAAATGTT
AGGAAAATTTGTAACATAAGAATATCCACCATCAATATCCAAACATAAAC
ATTGCTCTGAGATTTCGGTAATACTGATTATACTTAATTTATTTTGAAGT
TGGACTCGCTTTACCAATGGTTTGCTTTCTCCAGgcttaaaacattttaa
gaagCTACTTGATGgctgaaatatttgaaaaggcTGAGCATCGAAATAAT
TACCAAAAGCAACATAAAAATCGTTTCCATCATCTGTCTTGAAACAAGCG
AAGCAATTAGTTGAGAAATAATGACCTGTGGTTTGGGAGACAGATATGCT
ATTTCTACGCGTCTCCTTGGTGCGACAGCTTGATCTAATGATGAAGCCAC
CAAGCTTAATAGATGGAAATGTAAAAGTAGAAGAATAAATTGTCATAAAG
CGATCGGTAAACAGGGAACTTTCTTCTTTTGAAACAGCATATGGTAAAAA
GGCGTCAAAACCGGTCAGATTTAGATTGATTTTAAAAGTATGTTTATGAT
AAGTTCTCTTCAGCTGCTTGATATACTTATCCTCCTTTGTGCCAGGTTCA
ATACAGGTTTCTTCTAGATATGGAAGATGATTAGATGCTGAAACTGCACA
TGCTAGTTGAAATAGAATATTATGTGTGCCATGAATCAGTTTTAAAATAT
AACCATTCTTATCCTCAAAACTAAACAAACTGTATACATAAAGAGGGCCA
AGTTCCAAGACTGTTTGAGGTAGGTGATTCAAGGAATGAATATTGATGGT
CATGTAGCGACGTGGATATAGCTTGTCAAAAGTggagcaaaacaaaaaaa
taaatcttctCGCAGTAACAATATCATCTGGGGTAATTTTTGATTTCAGT
AATAAATGCACTGCATGGACAAGCAAATAAAAGTGTTCAAAATAGATGGA
GGGTAAAAGGTTTGACATGACGGGAACAAAGTAGTATAATAAAAATGAAC
GAAACTCTGAGGCTTTCCAGTAGCCAAGATTACTTTTTATTGTTCGGGGT
GCACGTGATATATAATTTGGTGGTTTCAGTGATACCAAACGGTTTTCAAT
AGAAGGTAGACTTTGATATACAGAATAAGATTCACTTTTATGAGAGCCAT
CAAACCATAAAGACATTATTAGTTTGGTAACTCCTAAAAGAACAGCATGC
ATATAGTCAATTCCCATTCCACGGATAATATCATGTTCTGGTAAAAGTAT
TAACGGAGAAGGTCCTTTAACCCCTTTAACATGAACTAAACTGTCAGAGT
TGGCTGATTCAATAGCATGCTTTATAGTACCTGCATGTGTTCTATGTGGA
CCAGTTGGATTCGATTCATCAAAAGGAAAAGCTCTAACATTCCCATTCTT
ATTTGTCTTCACTGTTTCTCCAGACTGCAGGCATTTTGGACAACCATAAA
ACGAATTGAATTGTTGAAAGTTCAGTGCACTAGCTTTGGCAGGCATATCA
AGGGTACCACAAAGCAAAATGGATTTTAGAGTAACTTCATCATTAATTTT
GGTTCCAAAATATGCCAATTCTTTAATTGTCTCAAATTGTGGTGGCAAAA
ACAGTAACATGTTTGGATGTGTCTCCCCATACCACAGGCCACTGAttaaa
atgttttcctttttcctTCGATCTTGAAAGGGCAACTCATTAATGGTATA
AAACACGGGCCAAATGGAAGATTTAATAGACTTGAACAGCGGTACACCAT
CCGTATTCCACataaatgaaatattgaaagGATTGTTCAAAAATGATGAA
TAAGATTTATACAAAGAAAAGTCATAAATGTCTGATGGAAATGAAGAGGT
ACGAGTAAACCTGTGCTTTAATTTCTGAAGCATGCCAGTACgagaaaaaa
ttgatttaatttgacttttgaGGTCGAACTCCATAA Run BLAST on NCBI transcript from alignment at sc0001510:15555..20662+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036758 ID=TCONS_00036758|Name=TCONS_00036758|organism=Clytia hemisphaerica|type=transcript|length=5108bp|location=Sequence derived from alignment at sc0001510:15555..20662+ (Clytia hemisphaerica)
ATACAATAAAGACTGTACTTTcagaaatgttttaaaaatatcataaaagt
TAAACTTTATGTGAAGCATGTGAAAATGATTAATCTGACTCTAAAATGTT
AGGAAAATTTGTAACATAAGAATATCCACCATCAATATCCAAACATAAAC
ATTGCTCTGAGATTTCGGTAATACTGATTATACTTAATTTATTTTGAAGT
TGGACTCGCTTTACCAATGGTTTGCTTTCTCCAGgcttaaaacattttaa
gaagCTACTTGATGgctgaaatatttgaaaaggcTGAGCATCGAAATAAT
TACCAAAAGCAACATAAAAATCGTTTCCATCATCTGTCTTGAAACAAGCG
AAGCAATTAGTTGAGAAATAATGACCTGTGGTTTGGGAGACAGATATGCT
ATTTCTACGCGTCTCCTTGGTGCGACAGCTTGATCTAATGATGAAGCCAC
CAAGCTTAATAGATGGAAATGTAAAAGTAGAAGAATAAATTGTCATAAAG
CGATCGGTAAACAGGGAACTTTCTTCTTTTGAAACAGCATATGGTAAAAA
GGCGTCAAAACCGGTCAGATTTAGATTGATTTTAAAAGTATGTTTATGAT
AAGTTCTCTTCAGCTGCTTGATATACTTATCCTCCTTTGTGCCAGGTTCA
ATACAGGTTTCTTCTAGATATGGAAGATGATTAGATGCTGAAACTGCACA
TGCTAGTTGAAATAGAATATTATGTGTGCCATGAATCAGTTTTAAAATAT
AACCATTCTTATCCTCAAAACTAAACAAACTGTATACATAAAGAGGGCCA
AGTTCCAAGACTGTTTGAGGTAGGTGATTCAAGGAATGAATATTGATGGT
CATGTAGCGACGTGGATATAGCTTGTCAAAAGTggagcaaaacaaaaaaa
taaatcttctCGCAGTAACAATATCATCTGGGGTAATTTTTGATTTCAGT
AATAAATGCACTGCATGGACAAGCAAATAAAAGTGTTCAAAATAGATGGA
GGGTAAAAGGTTTGACATGACGGGAACAAAGTAGTATAATAAAAATGAAC
GAAACTCTTAGGCTTTCCAGTAGCCAAGATTACTTTTTATTGTTCGGGGT
GCACATGATATATAATTTGGTGGTTTCAGTGATACCAAACGGTTTTCAAT
AGAAGGTAGACTTTGATATACAGAATAAGATTCACTTTTATGAGAGCCAT
CAAACCATAAAGACATTATTAGTTTGGTAACTCCTAAAAGAACAGCATGC
ATATAGTCAATTCCCATTCCACGGATAATATCATGTTCTGGTAAAAGTAT
TAACGGAGAAGGTCCTTTAACCCCTTTAACATGAACTAAACTGTCAGAGT
TGGCTGATTCAATAGCATGCTTTATAGTACCTGCATGTGTTCTATGTGGA
CCAGTTGGATTCGATTCATCAAAAGGAAAAGCTCTAACATTCCCATTCTT
ATTTGTCTTCACTGTTTCTCCAGACTGCAGGCATTTTGGACAACCATAAA
ACGAATTGAATTGTTGAAAGTTCAGTGCACTAGCTTTGGCAGGCATATCA
AGGGTACCACAAAGCAAAATGGATTTTAGAGTAACTTCATCATTAATTTT
GGTTCCAAAATATGCCAATTCTTTAATTGTCTCAAATTGTGGTGGCAAAA
ACAGTAACATGTTTGGATGTGTCTCCCCATACCACAGGCCACTGAttaaa
atgttttcctttttcctTCGATCTTGAAAGGGCAACTCATTAATGGTATA
AAACACAGGCCAAATGGAAGATTTAATAGACTTGAACAGCGGTACACCAT
CCGTATTCCACATAAACGAAATATTNTAAACAAAAGtgaatgaagacaaa
atgtaaacaaaaatattgcaaagaagttttcgaatgaattcacaatagaa
tgtcttcatttaaaaatagaaacactcgatttcattaaaaaaaaaaaaca
ttctttttttctttcagtaagtctttttgtgttgttgttagtaaattata
ttcacttttttgaatatattttttcgaataaagtcacttttggATTTTGT
TATGATCCAGCACTACTAAATACTCATCATTATGGatgtttgtgccaatg
ctagatcagcatttcataaatatacaTTGCGTCGTTCCCTTTAACAAGTT
ATGTATTCTTATATTTTGTACACATCAAGACTTACCATAGATTGCCCTGA
AACTGTCACTCCTTTTATGAATGtgataaaaaattttgttatttaagTAC
ATTATTACAGGTGATCTACTTTAGAAAATGACTTTAAACACATAATTTGT
GGAAGTAGAGAGTAACGATTTTGAGTAATATTAAAACCCTTTCTTATCCA
AgacaacaaaaaaatgaaattggagGGATATTTCATGCTAAGTTACTCAA
TTCTATGTGAAACTTTACCTGaaagttgaattttcaaaaattcataccCA
TACCCCCAAAAAATTAATATGGGACCTCTGAGTCCCTACGGATTAGAAAT
ACTGAAAAAAAGGTAGATTTCAAGAATATCCATGTTTTtcgtaaaataat
aaaataaatggAACCTAtttcataataaaaaaatagCAACAccacaaaat
caattttaactGATATTTTTAGTACTAATAGCACTATTAGAAAAGTTTCA
ACagtcaaaaagtgtttttcagtTCAGATTGCTTCATGAAATATAAGGTT
GCAGTTTTTGCTAGGATTGCAACAAAGGTAGACCTGGCATGTCGAACATT
TGCTGAAAGGTCTAGACTCAATGTTCTGTTTGCTGCAGACTTCACATCTT
CCCCTCTTTTCCTCGAAGACTATCCAGTGGCAACCTTTATTCTCCAATCT
AATGCTTTTTGAAACGGAATAGTCTGCTTTCCGCCGCTTTTTGGATGCCG
GTAAGGGAGAATTGCCAAGTGGTCGACCAACTTTCGGCGGTTTTGACAAA
GTAACAAGTGACTGAACAACAAGTCTCCGGTAACTCAACATGGGCATGTT
GTTGTTTTCCAGCTTTCTGAAGACAATAAATGCATTTGACAGAGTTCGGT
CAagcaatccaaaaaaaatccgatGCCACCATTTTGTCGATTTCCGACTA
CGGCCATTGACCGCACACTTGAAATCTGCCTGATCAACACCGCCCATGTA
CATATTGTATTCTTTTATTGCCAACGGGCAGTTAAATTCCTTACGGCTAC
CATCTCTCAATCGACGTAAGATCTTTGTTGAGGAGGTTCCATGGAAATTA
GAAACAACAGTTACTGGCTTTGAGTCCATCCACTTATAATAAGATATTTC
ACCCGCAAGCCTGTAATCGAAGTCTCCGCGTTGCAGATTAGTGGGAATAT
GCTTGTGGTTCCCCTTTATAGTCCCGCAAGCCCGGACACCAACAGTTTGC
AACTGAGACAATAATGAAATTGATGTGAAATAGTTGTCAATATAAACCTC
ATGGTCTTTGTGATGAAGGTGGTCGACAAGTTTCAATACTACGCGCTCAC
CAAGACCAAAAGACTTAAGATTTTCAGGGACAGATTCAAACTTTCCTTGG
TATACATCAAATTTATTGATGTACCCATCAGTGTCAGCAATCATCCACAG
TTTGTACCCTCTTTTTATTGGTTTTTTAGGATTATACTGCTTGATAGAGT
GTCTCCCTTTGAATAAAATCATACTTTCATCAATACTGAGATAGCGCGAT
GCATCGTACAACTTCAAAAAGTTCCCATTAAGGCTATCTATAAGAGGGCG
TAATTTGTACAGTTTATCAGTATTGTTTTTTGGAATTTGAGCATTGTCAT
TCACATGTAAGTTCCAGAGAATCTGTCCAAATCTATTGCGACTCATGACA
TTTGAAACATACGGCGTAGCCAAATCAGGGTCAGTTTTCCAATAATCCAA
CCACGACGGAAGCTTATTGTATCCCATGAGTAGATTTATTCCTAAGAAAC
CATACAGTTCCTGTCGGCTGATAGGTGTTATTGCTTTACCATTTTGTTTC
TGGGTAGCATACAAGTTTGTTTGGTAAAGaatgttttcttgaatttcgtt
gtcaaaaaatttaagaaaatagtCATTGGGGGTGTTACAATCGCCAAAAT
AAGCAAGCACAGGGCCCTCGTGTGAAGAAAATNTCGACATGACGGGAACA
AAGTAGTATAATAAAAATGAACGAAACTCTGAGGCTTTCCAGTAGCCAAG
ATTACTTTTTATTGTTCGGGGTGCACGTGATATATAATTTGGTGGTTTCA
GTGATACCAAACGGTTTTCAATAGAAGGTAGACTTTGATATACAGAATAA
GATTCACTTTTATGAGAGCCATCAAACCATAAAGACATTATTAGTTTGGT
AACTCCTAAAAGAACAGCATGCATATAGTCAATTCCCATTCCACGGATAA
TATCATGTTCTGGTAAAAGTATTAACGGAGAAGGTCCTTTAACCCCTTTA
ACATGAACTAAACTGTCAGAGTTGGCTGATTCAATAGCATGCTTTATAGT
ACCTGCATGTGTTCTATGTGGACCAGTTGGATTCGATTCATCAAAAGGAA
AAGCTCTAACATTCCCATTCTTATTTGTCTTCACTGTTTCTCCAGACTGC
AGGCATTTTGGACAACCATAAAACGAATTGAATTGTTGAAAGTTCAGTGC
ACTAGCTTTGGCAGGCATATCAAGGGTACCACAAAGCAAAATGGATTTTA
GAGTAACTTCATCATTAATTTTGGTTCCAAAATATGCCAATTCTTTAATT
GTCTCAAATTGTGGTGGCAAAAACAGTAACATGTTTGGATGTGTCTCCCC
ATACCACAGGCCACTGAttaaaatgttttcctttttcctTCGATCTTGAA
AGGGCAACTCATTAATGGTATAAAACACGGGCCAAATGGAAGATTTAATA
GACTTGAACAGCGGTACACCATCCGTATTCCACataaatgaaatattgaa
agGATTGTTCAAAAATGATGAATAAGATTTATACAAAGAAAAGTCATAAA
TGTCTGATGGAAATGAAGAGGTACGAGTAAACCTGTGCTTTAATTTCTGA
AGCATGCCAGTACgagaaaaaattgatttaatttgacttttgaGGTCGAA
CTCCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036758-exon-sc0001510-1491911889:15555..16570 | TCONS_00036758-exon-sc0001510-1491911889:15555..16570 | Clytia hemisphaerica | exon |
| TCONS_00036758-exon-sc0001510-1510915933:15555..16570 | TCONS_00036758-exon-sc0001510-1510915933:15555..16570 | Clytia hemisphaerica | exon |
| TCONS_00036758-exon-sc0001510-1575043694:15555..16570 | TCONS_00036758-exon-sc0001510-1575043694:15555..16570 | Clytia hemisphaerica | exon |
| TCONS_00036758-exon-sc0001510-1491911889:19693..20662 | TCONS_00036758-exon-sc0001510-1491911889:19693..20662 | Clytia hemisphaerica | exon |
| TCONS_00036758-exon-sc0001510-1510915933:19693..20662 | TCONS_00036758-exon-sc0001510-1510915933:19693..20662 | Clytia hemisphaerica | exon |
| TCONS_00036758-exon-sc0001510-1575043694:19693..20662 | TCONS_00036758-exon-sc0001510-1575043694:19693..20662 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001510 | supercontig | sc0001510:15555..20662 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004242 | Transposase_21 |
Blast
The following BLAST results are available for this feature:
|
